BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3202900.2.1
(938 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH855350.1|BH855350 SALK_085938.53.80.x Arabidopsis thal... 44 0.043
gb|AU239884.1|AU239884 AU239884 RAFL21 Arabidopsis thaliana... 44 0.043
gb|BP862480.1|BP862480 BP862480 RAFL21 Arabidopsis thaliana... 44 0.043
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.043
gb|AY086367.1| Arabidopsis thaliana clone 24560 mRNA, compl... 44 0.043
gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 g... 44 0.043
dbj|AK119001.1| Arabidopsis thaliana At1g28250 mRNA for unk... 44 0.043
ref|NM_102590.3| Arabidopsis thaliana unknown protein AT1G2... 44 0.043
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.043
gb|BH239961.1|BH239961 AUINB10TF AUIN Arabidopsis thaliana ... 42 0.17
gb|BH240073.1|BH240073 AUINB67TF AUIN Arabidopsis thaliana ... 42 0.17
gb|BH240387.1|BH240387 AUINC75TF AUIN Arabidopsis thaliana ... 42 0.17
gb|BH911770.1|BH911770 SALK_072070.53.90.x Arabidopsis thal... 42 0.17
gb|AV829517.1|AV829517 AV829517 RAFL9 Arabidopsis thaliana ... 42 0.17
gb|CK117923.1|CK117923 209i13.p1 AtM1 Arabidopsis thaliana ... 42 0.17
gb|BP801378.1|BP801378 BP801378 RAFL14 Arabidopsis thaliana... 42 0.17
gb|BP829991.1|BP829991 BP829991 RAFL19 Arabidopsis thaliana... 42 0.17
gb|AF043527.1|AF043527 Arabidopsis thaliana 20S proteasome ... 42 0.17
gb|AC074226.3|AC074226 Arabidopsis thaliana chromosome 1 cl... 42 0.17
gb|AY057649.1| Arabidopsis thaliana At1g47250/F8G22_3 mRNA,... 42 0.17
gb|AC109922.1| Arabidopsis thaliana chromosome unknown clon... 42 0.17
gb|AC079677.4|AC079677 Arabidopsis thaliana chromosome 1 BA... 42 0.17
emb|BX816090.1|CNS0ABU8 Arabidopsis thaliana Full-length cD... 42 0.17
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.17
emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4... 42 0.17
emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosom... 42 0.17
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.17
ref|NM_118370.1| Arabidopsis thaliana unknown protein AT4G2... 42 0.17
ref|NM_103619.3| Arabidopsis thaliana PAF2; endopeptidase/ ... 42 0.17
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.17
>gb|BH855350.1|BH855350 SALK_085938.53.80.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_085938.53.80.x,
DNA sequence
Length = 341
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 308 cttctccatctttcttcttctt 287
>gb|AU239884.1|AU239884 AU239884 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-33-J02 5',
mRNA sequence
Length = 640
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 47 cttctccatctttcttcttctt 26
>gb|BP862480.1|BP862480 BP862480 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-63-F21 5',
mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 37 cttctccatctttcttcttctt 16
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 9883088 cttctccatctttcttcttctt 9883067
>gb|AY086367.1| Arabidopsis thaliana clone 24560 mRNA, complete sequence
Length = 704
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 58 cttctccatctttcttcttctt 37
>gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete
sequence
Length = 121720
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 70764 cttctccatctttcttcttctt 70785
>dbj|AK119001.1| Arabidopsis thaliana At1g28250 mRNA for unknown protein, complete
cds, clone: RAFL21-33-J02
Length = 698
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 47 cttctccatctttcttcttctt 26
>ref|NM_102590.3| Arabidopsis thaliana unknown protein AT1G28250 mRNA, complete cds
Length = 756
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 58 cttctccatctttcttcttctt 37
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.043
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 566 cttctccatctttcttcttctt 587
||||||||||||||||||||||
Sbjct: 9874291 cttctccatctttcttcttctt 9874270
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 17321662 catctttcttcttcttgttcc 17321642
>gb|BH239961.1|BH239961 AUINB10TF AUIN Arabidopsis thaliana genomic clone AUINB10, DNA
sequence
Length = 750
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 296 catctttcttcttcttgttcc 276
>gb|BH240073.1|BH240073 AUINB67TF AUIN Arabidopsis thaliana genomic clone AUINB67, DNA
sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 366 catctttcttcttcttgttcc 346
>gb|BH240387.1|BH240387 AUINC75TF AUIN Arabidopsis thaliana genomic clone AUINC75, DNA
sequence
Length = 780
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 346 catctttcttcttcttgttcc 326
>gb|BH911770.1|BH911770 SALK_072070.53.90.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_072070.53.90.x,
DNA sequence
Length = 348
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 71 catctttcttcttcttgttcc 51
>gb|AV829517.1|AV829517 AV829517 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-47-D13 5',
mRNA sequence
Length = 495
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 47 catctttcttcttcttgttcc 27
>gb|CK117923.1|CK117923 209i13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011I13209
5-PRIME, mRNA sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 24 catctttcttcttcttgttcc 4
>gb|BP801378.1|BP801378 BP801378 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-19-K04 5',
mRNA sequence
Length = 381
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 43 catctttcttcttcttgttcc 23
>gb|BP829991.1|BP829991 BP829991 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-83-N14 5',
mRNA sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 55 catctttcttcttcttgttcc 35
>gb|AF043527.1|AF043527 Arabidopsis thaliana 20S proteasome subunit PAF2 (PAF2) mRNA,
complete cds
Length = 880
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 24 catctttcttcttcttgttcc 4
>gb|AC074226.3|AC074226 Arabidopsis thaliana chromosome 1 clone IGF-F27B9, *** SEQUENCING IN
PROGRESS ***, 5 unordered pieces
Length = 341064
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 304596 catctttcttcttcttgttcc 304616
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 134068 catctttcttcttcttgttcc 134088
>gb|AY057649.1| Arabidopsis thaliana At1g47250/F8G22_3 mRNA, complete cds
Length = 1036
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 46 catctttcttcttcttgttcc 26
>gb|AC109922.1| Arabidopsis thaliana chromosome unknown clone TAMU-T17J15, ***
SEQUENCING IN PROGRESS ***, 12 unordered pieces
Length = 55281
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 42433 catctttcttcttcttgttcc 42413
>gb|AC079677.4|AC079677 Arabidopsis thaliana chromosome 1 BAC F8G22 genomic sequence, complete
sequence
Length = 42801
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 11101 catctttcttcttcttgttcc 11121
>emb|BX816090.1|CNS0ABU8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH27ZC10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 991
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 36 catctttcttcttcttgttcc 16
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 570 tccatctttcttcttcttgtt 590
|||||||||||||||||||||
Sbjct: 7744988 tccatctttcttcttcttgtt 7745008
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project)
Length = 106702
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 570 tccatctttcttcttcttgtt 590
|||||||||||||||||||||
Sbjct: 20119 tccatctttcttcttcttgtt 20139
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
Length = 199577
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 570 tccatctttcttcttcttgtt 590
|||||||||||||||||||||
Sbjct: 68927 tccatctttcttcttcttgtt 68947
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 1678593 catctttcttcttcttgttcc 1678573
>ref|NM_118370.1| Arabidopsis thaliana unknown protein AT4G22440 mRNA, complete cds
Length = 267
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 570 tccatctttcttcttcttgtt 590
|||||||||||||||||||||
Sbjct: 219 tccatctttcttcttcttgtt 239
>ref|NM_103619.3| Arabidopsis thaliana PAF2; endopeptidase/ peptidase/ threonine
endopeptidase AT1G47250 (PAF2) mRNA, complete cds
Length = 1637
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 572 catctttcttcttcttgttcc 592
|||||||||||||||||||||
Sbjct: 46 catctttcttcttcttgttcc 26
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 570 tccatctttcttcttcttgtt 590
|||||||||||||||||||||
Sbjct: 11832232 tccatctttcttcttcttgtt 11832252
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 651,677
Number of Sequences: 1013581
Number of extensions: 651677
Number of successful extensions: 54998
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53248
Number of HSP's gapped (non-prelim): 1750
length of query: 938
length of database: 908,940,872
effective HSP length: 20
effective length of query: 918
effective length of database: 888,669,252
effective search space: 815798373336
effective search space used: 815798373336
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)