BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3199064.2.1
(589 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE521064.1|BE521064 M16F6STM Arabidopsis developing seed... 94 3e-017
emb|X60987.1|ATSUCSYN A.thaliana sucrose synthase gene 94 3e-017
dbj|AB016872.1| Arabidopsis thaliana genomic DNA, chromosom... 94 3e-017
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 94 3e-017
ref|NM_124296.2| Arabidopsis thaliana SUS2 (SUCROSE SYNTHAS... 94 3e-017
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 94 3e-017
gb|B27305.1|B27305 T4F15TR TAMU Arabidopsis thaliana genomi... 52 1e-004
emb|AL088797.1|CNS00SSF Arabidopsis thaliana genome survey ... 52 1e-004
gb|AV813826.1|AV813826 AV813826 RAFL9 Arabidopsis thaliana ... 52 1e-004
emb|X70990.1|ATSUS1 A.thaliana gene for sucrose synthase 52 1e-004
gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15 52 1e-004
gb|AY099712.1| Arabidopsis thaliana sucrose-UDP glucosyltra... 52 1e-004
emb|AX506925.1| Sequence 1620 from Patent WO0216655 52 1e-004
emb|AX651931.1| Sequence 808 from Patent WO03000898 52 1e-004
ref|NM_122090.2| Arabidopsis thaliana SUS1 (SUCROSE SYNTHAS... 52 1e-004
ref|NM_001036838.1| Arabidopsis thaliana SUS1 (SUCROSE SYNT... 52 1e-004
gb|CB254324.1|CB254324 72-E018427-019-008-O17-T7R MPIZ-ADIS... 50 4e-004
gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III ... 50 4e-004
gb|AY034958.1| Arabidopsis thaliana putative sucrose syntha... 50 4e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 50 4e-004
emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome ... 50 4e-004
ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransfera... 50 4e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 50 4e-004
gb|BZ378282.1|BZ378282 SALK_107491.44.40.x Arabidopsis thal... 48 0.002
gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BA... 48 0.002
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.002
ref|NM_105997.1| Arabidopsis thaliana UDP-glycosyltransfera... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|BH752829.1|BH752829 SALK_019405.54.35.x Arabidopsis thal... 44 0.027
gb|AY056784.1| Arabidopsis thaliana AT4g02280/T2H3_8 mRNA, ... 44 0.027
gb|AY051001.1| Arabidopsis thaliana putative sucrose synthe... 44 0.027
gb|AY142511.1| Arabidopsis thaliana putative sucrose synthe... 44 0.027
emb|AX507720.1| Sequence 2415 from Patent WO0216655 44 0.027
emb|BX828217.1|CNS0A2C8 Arabidopsis thaliana Full-length cD... 44 0.027
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 44 0.027
gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3 44 0.027
emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome... 44 0.027
ref|NM_116461.2| Arabidopsis thaliana UDP-glycosyltransfera... 44 0.027
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.027
>gb|BE521064.1|BE521064 M16F6STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M16F6 5', mRNA sequence
Length = 462
Score = 93.7 bits (47), Expect = 3e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 276 accgagttgttcatggaattgatgtctttgatcctaagtttaatatagtctctccaggag 335
Query: 61 ctgacatgtccatatactttcca 83
|||| ||| ||||||||||||||
Sbjct: 336 ctgatatgaccatatactttcca 358
>emb|X60987.1|ATSUCSYN A.thaliana sucrose synthase gene
Length = 4441
Score = 93.7 bits (47), Expect = 3e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 3136 accgagttgttcatggaattgatgtctttgatcctaagtttaatatagtctctccaggag 3195
Query: 61 ctgacatgtccatatactttcca 83
|||| ||| ||||||||||||||
Sbjct: 3196 ctgatatgaccatatactttcca 3218
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaa 232
||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct: 3435 aagccaatcatcttctctatggcaagacttgacagggtgaa 3475
>dbj|AB016872.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21P3
Length = 86001
Score = 93.7 bits (47), Expect = 3e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 22742 accgagttgttcatggaattgatgtctttgatcctaagtttaatatagtctctccaggag 22683
Query: 61 ctgacatgtccatatactttcca 83
|||| ||| ||||||||||||||
Sbjct: 22682 ctgatatgaccatatactttcca 22660
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaa 232
||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct: 22443 aagccaatcatcttctctatggcaagacttgacagggtgaa 22403
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 93.7 bits (47), Expect = 3e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 17984760 accgagttgttcatggaattgatgtctttgatcctaagtttaatatagtctctccaggag 17984701
Query: 61 ctgacatgtccatatactttcca 83
|||| ||| ||||||||||||||
Sbjct: 17984700 ctgatatgaccatatactttcca 17984678
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 6764283 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 6764224
Query: 63 ga 64
||
Sbjct: 6764223 ga 6764222
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaa 232
||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct: 17984461 aagccaatcatcttctctatggcaagacttgacagggtgaa 17984421
>ref|NM_124296.2| Arabidopsis thaliana SUS2 (SUCROSE SYNTHASE 2);
UDP-glycosyltransferase/ sucrose synthase/ transferase,
transferring glycosyl groups AT5G49190 (SUS2) mRNA,
complete cds
Length = 2511
Score = 93.7 bits (47), Expect = 3e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 1514 accgagttgttcatggaattgatgtctttgatcctaagtttaatatagtctctccaggag 1573
Query: 61 ctgacatgtccatatactttcca 83
|||| ||| ||||||||||||||
Sbjct: 1574 ctgatatgaccatatactttcca 1596
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaa 232
||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct: 1705 aagccaatcatcttctctatggcaagacttgacagggtgaa 1745
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 93.7 bits (47), Expect = 3e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 1 accgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggag 60
|||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 19961859 accgagttgttcatggaattgatgtctttgatcctaagtttaatatagtctctccaggag 19961800
Query: 61 ctgacatgtccatatactttcca 83
|||| ||| ||||||||||||||
Sbjct: 19961799 ctgatatgaccatatactttcca 19961777
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 7051753 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 7051694
Query: 63 ga 64
||
Sbjct: 7051693 ga 7051692
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 192 aagcccatcctcttctccatggcaagactcgacagggtgaa 232
||||| ||| ||||||| ||||||||||| |||||||||||
Sbjct: 19961560 aagccaatcatcttctctatggcaagacttgacagggtgaa 19961520
>gb|B27305.1|B27305 T4F15TR TAMU Arabidopsis thaliana genomic clone T4F15, DNA sequence
Length = 445
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 246 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 305
Query: 63 ga 64
||
Sbjct: 306 ga 307
>emb|AL088797.1|CNS00SSF Arabidopsis thaliana genome survey sequence T7 end of BAC T2K14 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 460
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 246 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 305
Query: 63 ga 64
||
Sbjct: 306 ga 307
>gb|AV813826.1|AV813826 AV813826 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-80-E22 3',
mRNA sequence
Length = 402
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 329 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 270
Query: 63 ga 64
||
Sbjct: 269 ga 268
>emb|X70990.1|ATSUS1 A.thaliana gene for sucrose synthase
Length = 5007
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 3768 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 3827
Query: 63 ga 64
||
Sbjct: 3828 ga 3829
>gb|AF296832.1|T1M15 Arabidopsis thaliana BAC T1M15
Length = 89490
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 84733 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 84674
Query: 63 ga 64
||
Sbjct: 84673 ga 84672
>gb|AY099712.1| Arabidopsis thaliana sucrose-UDP glucosyltransferase (At5g20830)
mRNA, complete cds
Length = 1942
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 1612 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 1671
Query: 63 ga 64
||
Sbjct: 1672 ga 1673
>emb|AX506925.1| Sequence 1620 from Patent WO0216655
Length = 2427
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 1525 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 1584
Query: 63 ga 64
||
Sbjct: 1585 ga 1586
>emb|AX651931.1| Sequence 808 from Patent WO03000898
Length = 2427
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 1525 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 1584
Query: 63 ga 64
||
Sbjct: 1585 ga 1586
>ref|NM_122090.2| Arabidopsis thaliana SUS1 (SUCROSE SYNTHASE 1);
UDP-glycosyltransferase/ sucrose synthase AT5G20830
(SUS1) transcript variant AT5G20830.1 mRNA, complete cds
Length = 2887
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 1612 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 1671
Query: 63 ga 64
||
Sbjct: 1672 ga 1673
>ref|NM_001036838.1| Arabidopsis thaliana SUS1 (SUCROSE SYNTHASE 1);
UDP-glycosyltransferase/ sucrose synthase AT5G20830
(SUS1) transcript variant AT5G20830.2 mRNA, complete cds
Length = 2879
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 3 cgagttgtccatgggatcgatgtcttcgatccaaagttcaatatagtctctcctggagct 62
|||||||| || ||||| ||||| || ||||| |||||||| || ||||||||||| |||
Sbjct: 1604 cgagttgttcacgggattgatgtgtttgatcccaagttcaacattgtctctcctggtgct 1663
Query: 63 ga 64
||
Sbjct: 1664 ga 1665
>gb|CB254324.1|CB254324 72-E018427-019-008-O17-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O178Q 5-PRIME, mRNA sequence
Length = 564
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 464 gatgtgtttgatccaaagttcaacattgtctctcctggagc 504
>gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III clone TAMU-T15O15, *** SEQUENCING
IN PROGRESS ***, 3 unordered pieces
Length = 80970
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 10261 gatgtgtttgatccaaagttcaacattgtctctcctggagc 10301
>gb|AY034958.1| Arabidopsis thaliana putative sucrose synthase (At3g43190) mRNA,
complete cds
Length = 1798
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 760 gatgtgtttgatccaaagttcaacattgtctctcctggagc 800
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 15144389 gatgtgtttgatccaaagttcaacattgtctctcctggagc 15144349
>emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F7K15
Length = 110800
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 15987 gatgtgtttgatccaaagttcaacattgtctctcctggagc 15947
>ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT3G43190 mRNA,
complete cds
Length = 2717
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 1696 gatgtgtttgatccaaagttcaacattgtctctcctggagc 1736
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 21 gatgtcttcgatccaaagttcaatatagtctctcctggagc 61
||||| || |||||||||||||| || ||||||||||||||
Sbjct: 15191336 gatgtgtttgatccaaagttcaacattgtctctcctggagc 15191296
>gb|BZ378282.1|BZ378282 SALK_107491.44.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_107491.44.40.x,
DNA sequence
Length = 376
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 202 tcttctccatggcaagactcgacagggtgaagaacataac 241
||||||| ||||| ||||| |||| |||||||||||||||
Sbjct: 229 tcttctcaatggcgagacttgacacggtgaagaacataac 268
>gb|AC012396.7|AC012396 Arabidopsis thaliana chromosome 1 BAC T9L24 genomic sequence, complete
sequence
Length = 90459
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 202 tcttctccatggcaagactcgacagggtgaagaacataac 241
||||||| ||||| ||||| |||| |||||||||||||||
Sbjct: 67186 tcttctcaatggcgagacttgacacggtgaagaacataac 67225
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 202 tcttctccatggcaagactcgacagggtgaagaacataac 241
||||||| ||||| ||||| |||| |||||||||||||||
Sbjct: 11827108 tcttctcaatggcgagacttgacacggtgaagaacataac 11827069
>ref|NM_105997.1| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase
AT1G73370 mRNA, complete cds
Length = 2883
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 202 tcttctccatggcaagactcgacagggtgaagaacataac 241
||||||| ||||| ||||| |||| |||||||||||||||
Sbjct: 1736 tcttctcaatggcgagacttgacacggtgaagaacataac 1775
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 202 tcttctccatggcaagactcgacagggtgaagaacataac 241
||||||| ||||| ||||| |||| |||||||||||||||
Sbjct: 27589447 tcttctcaatggcgagacttgacacggtgaagaacataac 27589408
>gb|BH752829.1|BH752829 SALK_019405.54.35.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_019405.54.35.x,
DNA sequence
Length = 441
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 185 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 136
>gb|AY056784.1| Arabidopsis thaliana AT4g02280/T2H3_8 mRNA, complete cds
Length = 2898
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 1950 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 1999
>gb|AY051001.1| Arabidopsis thaliana putative sucrose synthetase (At4g02280) mRNA,
complete cds
Length = 2904
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 1925 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 1974
>gb|AY142511.1| Arabidopsis thaliana putative sucrose synthetase (At4g02280) mRNA,
complete cds
Length = 2506
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 1711 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 1760
>emb|AX507720.1| Sequence 2415 from Patent WO0216655
Length = 2430
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 1711 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 1760
>emb|BX828217.1|CNS0A2C8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH64ZE09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2686
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 1772 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 1821
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 996403 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 996452
>gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3
Length = 48689
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 19035 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 18986
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
Length = 194892
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 33243 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 33292
>ref|NM_116461.2| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT4G02280 mRNA,
complete cds
Length = 2913
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 1950 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 1999
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.027
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 189 tcaaagcccatcctcttctccatggcaagactcgacagggtgaagaacat 238
|||||||| || |||||||| ||||| || ||||||| |||||||||||
Sbjct: 997593 tcaaagccaatactcttctctatggcgaggctcgacaaagtgaagaacat 997642
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 222,352
Number of Sequences: 1013581
Number of extensions: 222352
Number of successful extensions: 14176
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13415
Number of HSP's gapped (non-prelim): 761
length of query: 589
length of database: 908,940,872
effective HSP length: 20
effective length of query: 569
effective length of database: 888,669,252
effective search space: 505652804388
effective search space used: 505652804388
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)