BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 74 3e-011
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 74 3e-011
emb|AX505737.1| Sequence 432 from Patent WO0216655 74 3e-011
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 74 3e-011
gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed... 60 5e-007
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 60 5e-007
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 60 5e-007
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 60 5e-007
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 60 5e-007
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 60 5e-007
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 60 5e-007
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 60 5e-007
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 60 5e-007
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 60 5e-007
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 60 5e-007
gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf A... 58 2e-006
gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEA... 58 2e-006
dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosom... 58 2e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 58 2e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 58 2e-006
gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana ... 56 8e-006
gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis tha... 56 8e-006
gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC ... 56 8e-006
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 56 8e-006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 56 8e-006
emb|CR397125.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 52 1e-004
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 52 1e-004
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.029
gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis tha... 44 0.029
ref|NM_102867.1| Arabidopsis thaliana unknown protein AT1G3... 44 0.029
emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.11
gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana ... 42 0.11
gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveg... 42 0.11
gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower... 42 0.11
gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower... 42 0.11
gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots ... 42 0.11
gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots ... 42 0.11
gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green ... 42 0.11
gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana... 42 0.11
gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana... 42 0.11
gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana... 42 0.11
gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana... 42 0.11
gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana... 42 0.11
gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana... 42 0.11
gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana... 42 0.11
gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana ... 42 0.11
gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana ... 42 0.11
gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana ... 42 0.11
gb|AY600524.1| Arabidopsis thaliana hypothetical protein (A... 42 0.11
gb|BH906783.1|BH906783 SALK_035831.54.50.x Arabidopsis thal... 40 0.45
gb|BP782965.1|BP782965 BP782965 RAFL7 Arabidopsis thaliana ... 40 0.45
gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BA... 40 0.45
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 328 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 269
Query: 582 tggattccagcatgactacagaggtagaa 610
|| || || ||||| ||||| ||||||||
Sbjct: 268 tgaatacccgcatggctacaaaggtagaa 240
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 2842 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 2783
Query: 582 tggattccagcatgactacagaggtagaa 610
|| || || ||||| ||||| ||||||||
Sbjct: 2782 tgaatacccgcatggctacaaaggtagaa 2754
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 2714 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 2655
Query: 582 tggattccagcatgactacagaggtagaa 610
|| || || ||||| ||||| ||||||||
Sbjct: 2654 tgaatacccgcatggctacaaaggtagaa 2626
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 73.8 bits (37), Expect = 3e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 2842 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 2783
Query: 582 tggattccagcatgactacagaggtagaa 610
|| || || ||||| ||||| ||||||||
Sbjct: 2782 tgaatacccgcatggctacaaaggtagaa 2754
>gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M35A4 5', mRNA sequence
Length = 394
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 356 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 297
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 296 tgactacagaggtaaaagtcaaactctgtagggtggca 259
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 410 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 469
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 470 tgactacagaggtaaaagtcaaactctgtagggtggca 507
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 267 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 326
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 327 gaacaattgaaactgagcgtgtgca 351
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 421 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 480
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 481 tgactacagaggtaaaagtcaaactctgtagggtggca 518
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 278 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 337
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 338 gaacaattgaaactgagcgtgtgca 362
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 421 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 480
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 481 tgactacagaggtaaaagtcaaactctgtagggtggca 518
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 278 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 337
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 338 gaacaattgaaactgagcgtgtgca 362
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 337 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 278
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 277 tgactacagaggtaaaagtcaaactctgtagggtggca 240
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 480 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 421
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 420 gaacaattgaaactgagcgtgtgca 396
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 2981 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 2922
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 2921 tgactacagaggtaaaagtcaaactctgtagggtggca 2884
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 3124 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 3065
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 3064 gaacaattgaaactgagcgtgtgca 3040
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 2253 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 2194
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 2193 tgactacagaggtaaaagtcaaactctgtagggtggca 2156
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 2396 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 2337
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 2336 gaacaattgaaactgagcgtgtgca 2312
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 2855 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 2796
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 2795 tgactacagaggtaaaagtcaaactctgtagggtggca 2758
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 2998 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 2939
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 2938 gaacaattgaaactgagcgtgtgca 2914
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 2731 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 2672
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 2671 tgactacagaggtaaaagtcaaactctgtagggtggca 2634
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 3004 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 2945
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 2944 tgactacagaggtaaaagtcaaactctgtagggtggca 2907
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 3147 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 3088
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 3087 gaacaattgaaactgagcgtgtgca 3063
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 3010 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 2951
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 2950 tgactacagaggtaaaagtcaaactctgtagggtggca 2913
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 3153 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 3094
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 3093 gaacaattgaaactgagcgtgtgca 3069
>gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 569
Score = 58.0 bits (29), Expect = 2e-006
Identities = 71/85 (83%)
Strand = Plus / Minus
Query: 526 ctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccctgga 585
|||||||||||||||| ||||| || |||||| | || ||||||| || |||||||| |
Sbjct: 569 ctgtgaaattgttctcgtcccaaagaacatggtaatgtccaggcctgcttgttccctgaa 510
Query: 586 ttccagcatgactacagaggtagaa 610
| || ||||| ||||| ||||||||
Sbjct: 509 tacccgcatggctacaaaggtagaa 485
>gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEAD) gene, complete cds
Length = 5895
Score = 58.0 bits (29), Expect = 2e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 5316 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 5257
Query: 582 t 582
|
Sbjct: 5256 t 5256
>dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19
Length = 87286
Score = 58.0 bits (29), Expect = 2e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 71105 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 71046
Query: 582 t 582
|
Sbjct: 71045 t 71045
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 58.0 bits (29), Expect = 2e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 16028935 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 16028876
Query: 582 t 582
|
Sbjct: 16028875 t 16028875
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 58.0 bits (29), Expect = 2e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttccc 581
|||||||||||||||||||| ||||| || |||||| | || |||||||| || ||||||
Sbjct: 17633441 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccc 17633382
Query: 582 t 582
|
Sbjct: 17633381 t 17633381
>gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011J21204
5-PRIME, mRNA sequence
Length = 777
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 775 ccagcatgactacagaggtaaaagtcaaactctgtagggtggca 732
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome
I, complete sequence
Length = 95295
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 1806 ccagcatgactacagaggtaaaagtcaaactctgtagggtggca 1849
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
sequence
Length = 102078
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 17150 ccagcatgactacagaggtaaaagtcaaactctgtagggtggca 17107
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 2246176 ccagcatgactacagaggtaaaagtcaaactctgtagggtggca 2246219
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 cattgtttctgcaaaacatacatt 33
|||||||||| |||||||||||||
Sbjct: 3616801 cattgtttcttcaaaacatacatt 3616824
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 588 ccagcatgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||||||||| || |||||||| || ||||||||
Sbjct: 17890582 ccagcatgactacagaggtaaaagtcaaactctgtagggtggca 17890625
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 594 tgactacagaggtagaaatcaaactc 619
||||||||||||||||||||| ||||
Sbjct: 11191952 tgactacagaggtagaaatcatactc 11191927
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 cattgtttctgcaaaacatacatt 33
|||||||||| |||||||||||||
Sbjct: 19261206 cattgtttcttcaaaacatacatt 19261229
>emb|CR397125.1| Arabidopsis thaliana T-DNA flanking sequence GK-414C08-026070,
genomic survey sequence
Length = 74
Score = 54.0 bits (27), Expect = 3e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 522 tctgctgtgaaattgttctcatcccagaggacatgggagtgagcaggcctactcgttcc 580
|||||||||||||||||||| ||||| || |||||| | || |||||||| || |||||
Sbjct: 13 tctgctgtgaaattgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttcc 71
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 52.0 bits (26), Expect = 1e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || ||||||
Sbjct: 227 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagca 286
Query: 594 tgactacagaggtagaaatcaaactc 619
|||||||||||||| || ||||||||
Sbjct: 287 tgactacagaggtaaaagtcaaactc 312
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 84 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 143
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 144 gaacaattgaaactgagcgtgtgca 168
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 52.0 bits (26), Expect = 1e-004
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 534 ttgttctcatcccagaggacatgggagtgagcaggcctactcgttccctggattccagca 593
|||||||||||||| || || ||| | |||||||| | | || ||||| || |||||
Sbjct: 260 ttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtgccctgaataccagcg 201
Query: 594 tgactacagaggtagaaatcaaactccgttgggtggca 631
|||||||||||||| || |||||||| || ||||||||
Sbjct: 200 tgactacagaggtaaaagtcaaactctgtagggtggca 163
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 594 tgactacagaggtagaaatcaaactc 619
||||||||||||||||||||| ||||
Sbjct: 11200752 tgactacagaggtagaaatcatactc 11200727
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I,
complete sequence
Length = 87618
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 594 tgactacagaggtagaaatcaaactc 619
||||||||||||||||||||| ||||
Sbjct: 32463 tgactacagaggtagaaatcatactc 32438
>ref|NM_102867.1| Arabidopsis thaliana unknown protein AT1G31290 mRNA, complete cds
Length = 3585
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 594 tgactacagaggtagaaatcaaactc 619
||||||||||||||||||||| ||||
Sbjct: 3239 tgactacagaggtagaaatcatactc 3214
>emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequence GK-195F03-020163,
genomic survey sequence
Length = 493
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 588 ccagcatgactacagaggtagaaatcaaa 616
|||||||||||||||||||| || |||||
Sbjct: 41 ccagcatgactacagaggtaaaactcaaa 13
>gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-79-O07 3',
mRNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 309 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 368
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 369 gaacaattgaaactgagcgtgtgca 393
>gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL51c02R 5', mRNA
sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 330 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 389
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 390 gaacaattgaaactgagcgtgtgca 414
>gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB053a03F 3', mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 332 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 391
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 392 gaacaattgaaactgagcgtgtgca 416
>gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB072b01F 3', mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 337 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 396
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 397 gaacaattgaaactgagcgtgtgca 421
>gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL46g10F 3', mRNA sequence
Length = 511
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 325 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 384
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 385 gaacaattgaaactgagcgtgtgca 409
>gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL48g02F 3', mRNA sequence
Length = 540
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 328 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 387
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 388 gaacaattgaaactgagcgtgtgca 412
>gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ139e07F 3', mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 329 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 388
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 389 gaacaattgaaactgagcgtgtgca 413
>gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-F08 3',
mRNA sequence
Length = 436
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 326 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 385
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 386 gaacaattgaaactgagcgtgtgca 410
>gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-M05 3',
mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 326 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 385
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 386 gaacaattgaaactgagcgtgtgca 410
>gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-I10 3',
mRNA sequence
Length = 424
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 326 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 385
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 386 gaacaattgaaactgagcgtgtgca 410
>gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-F12 3',
mRNA sequence
Length = 435
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 326 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 385
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 386 gaacaattgaaactgagcgtgtgca 410
>gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-24-B20 3',
mRNA sequence
Length = 439
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 327 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 386
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 387 gaacaattgaaactgagcgtgtgca 411
>gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-35-C16 3',
mRNA sequence
Length = 431
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 280 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 339
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 340 gaacaattgaaactgagcgtgtgca 364
>gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-50-E21 3',
mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 279 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 338
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 339 gaacaattgaaactgagcgtgtgca 363
>gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-80-K18 3',
mRNA sequence
Length = 412
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 327 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 386
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 387 gaacaattgaaactgagcgtgtgca 411
>gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-B12 3',
mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 333 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 392
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 393 gaacaattgaaactgagcgtgtgca 417
>gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-64-A11 3',
mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 334 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 393
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 394 gaacaattgaaactgagcgtgtgca 418
>gb|AY600524.1| Arabidopsis thaliana hypothetical protein (At1g48405) mRNA,
complete cds
Length = 1462
Score = 42.1 bits (21), Expect = 0.11
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 391 tctctggttccatgtagaaccgagcccgcaatgctgccaagtgtgcgtagtatgcaggag 450
||||||| ||||||||||| ||||||| || ||||| | ||||| || |||||||| |
Sbjct: 183 tctctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcagggg 124
Query: 451 ggacaacacaaaccgagcgtgtgca 475
| |||| |||| |||||||||||
Sbjct: 123 gaacaattgaaactgagcgtgtgca 99
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 301,791
Number of Sequences: 1013581
Number of extensions: 301791
Number of successful extensions: 23318
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22451
Number of HSP's gapped (non-prelim): 853
length of query: 631
length of database: 908,940,872
effective HSP length: 20
effective length of query: 611
effective length of database: 888,669,252
effective search space: 542976912972
effective search space used: 542976912972
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)