BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.1
(1019 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH235775.1|BH235775 ATZKE62TF ATZK Arabidopsis thaliana ... 44 0.047
gb|BH235887.1|BH235887 ATZKD41TR ATZK Arabidopsis thaliana ... 44 0.047
gb|BH235968.1|BH235968 ATZKD69TR ATZK Arabidopsis thaliana ... 44 0.047
gb|BH236010.1|BH236010 ATZKD01TF ATZK Arabidopsis thaliana ... 44 0.047
emb|AL081360.1|CNS00N1U Arabidopsis thaliana genome survey ... 42 0.19
gb|AQ955399.1|AQ955399 LERAD72TR LERA Arabidopsis thaliana ... 42 0.19
gb|CC884467.1|CC884467 SALK_113196.56.00.x Arabidopsis thal... 42 0.19
gb|CW801216.1|CW801216 WiscDsLox345-348M5 Arabidopsis thali... 42 0.19
dbj|AB010694.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.19
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.19
emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome... 42 0.19
gb|DQ056699.1| Arabidopsis thaliana putative expansin (At5g... 42 0.19
ref|NM_123290.1| Arabidopsis thaliana ATEXPA23 (ARABIDOPSIS... 42 0.19
ref|NM_123292.1| Arabidopsis thaliana ATEXPA25 (ARABIDOPSIS... 42 0.19
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.19
>gb|BH235775.1|BH235775 ATZKE62TF ATZK Arabidopsis thaliana genomic clone ATZKE62, DNA
sequence
Length = 589
Score = 44.1 bits (22), Expect = 0.047
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggc 128
||||||||||||||||||||||
Sbjct: 409 cgaggaggaggaggacggcggc 430
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggc 128
|||||||||||||||||||||
Sbjct: 362 gaggaggaggaggacggcggc 382
>gb|BH235887.1|BH235887 ATZKD41TR ATZK Arabidopsis thaliana genomic clone ATZKD41, DNA
sequence
Length = 742
Score = 44.1 bits (22), Expect = 0.047
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggc 128
||||||||||||||||||||||
Sbjct: 7 cgaggaggaggaggacggcggc 28
>gb|BH235968.1|BH235968 ATZKD69TR ATZK Arabidopsis thaliana genomic clone ATZKD69, DNA
sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.047
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 cgaggaggaggaggacggcggc 128
||||||||||||||||||||||
Sbjct: 426 cgaggaggaggaggacggcggc 447
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 gaggaggaggaggacggcggc 128
|||||||||||||||||||||
Sbjct: 379 gaggaggaggaggacggcggc 399
>gb|BH236010.1|BH236010 ATZKD01TF ATZK Arabidopsis thaliana genomic clone ATZKD01, DNA
sequence
Length = 596
Score = 44.1 bits (22), Expect = 0.047
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 107 cgaggaggaggaggacggcggc 128
||||||||||||||||||||||
Sbjct: 311 cgaggaggaggaggacggcggc 290
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 108 gaggaggaggaggacggcggc 128
|||||||||||||||||||||
Sbjct: 358 gaggaggaggaggacggcggc 338
>emb|AL081360.1|CNS00N1U Arabidopsis thaliana genome survey sequence SP6 end of BAC F2N15 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 849 tttatatgtatatgcatgcag 869
|||||||||||||||||||||
Sbjct: 394 tttatatgtatatgcatgcag 374
>gb|AQ955399.1|AQ955399 LERAD72TR LERA Arabidopsis thaliana genomic clone LERAD72, DNA
sequence
Length = 592
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 849 tttatatgtatatgcatgcag 869
|||||||||||||||||||||
Sbjct: 90 tttatatgtatatgcatgcag 70
>gb|CC884467.1|CC884467 SALK_113196.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_113196.56.00.x,
DNA sequence
Length = 429
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 849 tttatatgtatatgcatgcag 869
|||||||||||||||||||||
Sbjct: 83 tttatatgtatatgcatgcag 63
>gb|CW801216.1|CW801216 WiscDsLox345-348M5 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 738
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 274 agcactttgacctctccctaccaatgttcctcaagatcgcc 234
>dbj|AB010694.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K3
Length = 68889
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 62326 agcactttgacctctccctaccaatgttcctcaagatcgcc 62286
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 55612 agcactttgacctctccctaccaatgttcctcaagatcgcc 55572
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 14474379 agcactttgacctctccctaccaatgttcctcaagatcgcc 14474339
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 14467665 agcactttgacctctccctaccaatgttcctcaagatcgcc 14467625
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 849 tttatatgtatatgcatgcag 869
|||||||||||||||||||||
Sbjct: 325606 tttatatgtatatgcatgcag 325626
>emb|AL162351.1|ATT20L15 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project)
Length = 96565
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 849 tttatatgtatatgcatgcag 869
|||||||||||||||||||||
Sbjct: 50676 tttatatgtatatgcatgcag 50696
>gb|DQ056699.1| Arabidopsis thaliana putative expansin (At5g39280) mRNA, complete
cds
Length = 780
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 395 agcactttgacctctccctaccaatgttcctcaagatcgcc 435
>ref|NM_123290.1| Arabidopsis thaliana ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)
AT5G39280 (ATEXPA23) mRNA, complete cds
Length = 780
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 395 agcactttgacctctccctaccaatgttcctcaagatcgcc 435
>ref|NM_123292.1| Arabidopsis thaliana ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25)
AT5G39300 (ATEXPA25) mRNA, complete cds
Length = 783
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 398 agcactttgacctctccctaccaatgttcctcaagatcgcc 438
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 15755040 agcactttgacctctccctaccaatgttcctcaagatcgcc 15755000
Score = 42.1 bits (21), Expect = 0.19
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 424 agcactttgacctcaccataccggcgttcctcaagatcgcc 464
|||||||||||||| || |||| ||||||||||||||||
Sbjct: 15748326 agcactttgacctctccctaccaatgttcctcaagatcgcc 15748286
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 849 tttatatgtatatgcatgcag 869
|||||||||||||||||||||
Sbjct: 326049 tttatatgtatatgcatgcag 326069
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 325,898
Number of Sequences: 1013581
Number of extensions: 325898
Number of successful extensions: 31609
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30998
Number of HSP's gapped (non-prelim): 611
length of query: 1019
length of database: 908,940,872
effective HSP length: 20
effective length of query: 999
effective length of database: 888,669,252
effective search space: 887780582748
effective search space used: 887780582748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)