BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115474.2.1
(798 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB046870.1| Arabidopsis thaliana AHK3 mRNA for histidin... 88 3e-015
emb|AX507714.1| Sequence 2409 from Patent WO0216655 88 3e-015
emb|AX537477.1| Sequence 3 from Patent EP1241182 88 3e-015
emb|CS063643.1| Sequence 5 from Patent EP1522586 88 3e-015
ref|NM_102494.2| Arabidopsis thaliana AHK3 (ARABIDOPSIS HIS... 88 3e-015
dbj|DD159608.1| Transformed Cell co-expressing both of cyto... 88 3e-015
gb|BP839719.1|BP839719 BP839719 RAFL19 Arabidopsis thaliana... 84 4e-014
dbj|AB046869.1| Arabidopsis thaliana AHK2 mRNA for histidin... 84 4e-014
emb|AX537475.1| Sequence 1 from Patent EP1241182 84 4e-014
gb|BT002530.1| Arabidopsis thaliana histidine kinase-like p... 84 4e-014
gb|BT008407.1| Arabidopsis thaliana At5g35750 gene, complet... 84 4e-014
dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosom... 84 4e-014
dbj|AK175733.1| Arabidopsis thaliana mRNA for histidine kin... 84 4e-014
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 84 4e-014
emb|CS063641.1| Sequence 3 from Patent EP1522586 84 4e-014
ref|NM_122966.2| Arabidopsis thaliana AHK2 (ARABIDOPSIS HIS... 84 4e-014
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 84 4e-014
dbj|DD159607.1| Transformed Cell co-expressing both of cyto... 84 4e-014
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 68 3e-009
gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis tha... 68 3e-009
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 68 3e-009
gb|AI997692.1|AI997692 701670083 A. thaliana, Columbia Col-... 56 1e-005
>dbj|AB046870.1| Arabidopsis thaliana AHK3 mRNA for histidine kinase, complete cds
Length = 3111
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 2860 ttgtagcttcaaatccatccatttctggcatctgaatgtccatgaagcaagcatcaaact 2801
Query: 259 tgtgaggaggtttcagcagtgtgattgc 286
|||||| || || |||| || ||||||
Sbjct: 2800 cgtgaggtggcttaagcaatgagattgc 2773
>emb|AX507714.1| Sequence 2409 from Patent WO0216655
Length = 3279
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 2956 ttgtagcttcaaatccatccatttctggcatctgaatgtccatgaagcaagcatcaaact 2897
Query: 259 tgtgaggaggtttcagcagtgtgattgc 286
|||||| || || |||| || ||||||
Sbjct: 2896 cgtgaggtggcttaagcaatgagattgc 2869
>emb|AX537477.1| Sequence 3 from Patent EP1241182
Length = 3111
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 2860 ttgtagcttcaaatccatccatttctggcatctgaatgtccatgaagcaagcatcaaact 2801
Query: 259 tgtgaggaggtttcagcagtgtgattgc 286
|||||| || || |||| || ||||||
Sbjct: 2800 cgtgaggtggcttaagcaatgagattgc 2773
>emb|CS063643.1| Sequence 5 from Patent EP1522586
Length = 3111
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 2860 ttgtagcttcaaatccatccatttctggcatctgaatgtccatgaagcaagcatcaaact 2801
Query: 259 tgtgaggaggtttcagcagtgtgattgc 286
|||||| || || |||| || ||||||
Sbjct: 2800 cgtgaggtggcttaagcaatgagattgc 2773
>ref|NM_102494.2| Arabidopsis thaliana AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) AT1G27320
(AHK3) mRNA, complete cds
Length = 3283
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 2860 ttgtagcttcaaatccatccatttctggcatctgaatgtccatgaagcaagcatcaaact 2801
Query: 259 tgtgaggaggtttcagcagtgtgattgc 286
|||||| || || |||| || ||||||
Sbjct: 2800 cgtgaggtggcttaagcaatgagattgc 2773
>dbj|DD159608.1| Transformed Cell co-expressing both of cytokinin receptor and
cytokinin biosynthesizing enzyme
Length = 3111
Score = 87.7 bits (44), Expect = 3e-015
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaat 258
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
Sbjct: 2860 ttgtagcttcaaatccatccatttctggcatctgaatgtccatgaagcaagcatcaaact 2801
Query: 259 tgtgaggaggtttcagcagtgtgattgc 286
|||||| || || |||| || ||||||
Sbjct: 2800 cgtgaggtggcttaagcaatgagattgc 2773
>gb|BP839719.1|BP839719 BP839719 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-27-P09 5',
mRNA sequence
Length = 391
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 204 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 145
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 144 gtcattgctaatat 131
>dbj|AB046869.1| Arabidopsis thaliana AHK2 mRNA for histidine kinase, complete cds
Length = 3531
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 3467 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 3408
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 3407 gtcattgctaatat 3394
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 3295 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 3241
>emb|AX537475.1| Sequence 1 from Patent EP1241182
Length = 3531
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 3467 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 3408
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 3407 gtcattgctaatat 3394
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 3295 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 3241
>gb|BT002530.1| Arabidopsis thaliana histidine kinase-like protein (At5g35750) mRNA,
complete cds
Length = 2347
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 1915 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 1856
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 1855 gtcattgctaatat 1842
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 1743 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 1689
>gb|BT008407.1| Arabidopsis thaliana At5g35750 gene, complete cds
Length = 1959
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 1895 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 1836
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 1835 gtcattgctaatat 1822
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 1723 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 1669
>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1
Length = 87210
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 57710 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 57769
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 57770 gtcattgctaatat 57783
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||||||||||||||||||| | |||||||| ||||||||
Sbjct: 57981 ccatccatttcaggcatctggagatccatgaagcaagcatc 58021
>dbj|AK175733.1| Arabidopsis thaliana mRNA for histidine kinase (AHK2), complete
cds, clone: RAFL22-27-P09
Length = 625
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 203 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 144
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 143 gtcattgctaatat 130
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 12935182 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 12935241
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 12935242 gtcattgctaatat 12935255
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||||||||||||||||||| | |||||||| ||||||||
Sbjct: 12935453 ccatccatttcaggcatctggagatccatgaagcaagcatc 12935493
>emb|CS063641.1| Sequence 3 from Patent EP1522586
Length = 3531
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 3467 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 3408
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 3407 gtcattgctaatat 3394
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 3295 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 3241
>ref|NM_122966.2| Arabidopsis thaliana AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) AT5G35750
(AHK2) mRNA, complete cds
Length = 3903
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 3467 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 3408
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 3407 gtcattgctaatat 3394
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 3295 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 3241
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 13929037 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 13929096
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 13929097 gtcattgctaatat 13929110
Score = 50.1 bits (25), Expect = 6e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||||||||||||||||||| | |||||||| ||||||||
Sbjct: 13929308 ccatccatttcaggcatctggagatccatgaagcaagcatc 13929348
>dbj|DD159607.1| Transformed Cell co-expressing both of cytokinin receptor and
cytokinin biosynthesizing enzyme
Length = 3531
Score = 83.8 bits (42), Expect = 4e-014
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 30 acataaccatccatttcagatttcaagcattgttcatgtgtcgcctggataacatctgct 89
||||||||||||||| || |||||| ||||| |||||| || ||||| ||||||||||||
Sbjct: 3467 acataaccatccattccacatttcatgcattcttcatgagtagcctgaataacatctgct 3408
Query: 90 gtcatggctaatat 103
||||| ||||||||
Sbjct: 3407 gtcattgctaatat 3394
Score = 69.9 bits (35), Expect = 6e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 199 ttgtggcttcaaatccatccatttcaggcatctgtatgtccatgaaacaagcatc 253
|||| ||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 3295 ttgtcgcttcaaatccatccatttcaggcatctggagatccatgaagcaagcatc 3241
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||| ||||||||||| ||||||||||| | |||||| || ||
Sbjct: 9500456 ccatccatttctggcatctgaatgtccatgaagcaagcatcaaactcgtgaggtggctta 9500397
Query: 273 agcagtgtgattgc 286
|||| || ||||||
Sbjct: 9500396 agcaatgagattgc 9500383
>gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana BAC F17L21 from chromosome I,
complete sequence
Length = 99690
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||| ||||||||||| ||||||||||| | |||||| || ||
Sbjct: 35558 ccatccatttctggcatctgaatgtccatgaagcaagcatcaaactcgtgaggtggctta 35499
Query: 273 agcagtgtgattgc 286
|||| || ||||||
Sbjct: 35498 agcaatgagattgc 35485
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 67.9 bits (34), Expect = 3e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 213 ccatccatttcaggcatctgtatgtccatgaaacaagcatcaaaattgtgaggaggtttc 272
||||||||||| |||||||| ||||||||||| ||||||||||| | |||||| || ||
Sbjct: 9491660 ccatccatttctggcatctgaatgtccatgaagcaagcatcaaactcgtgaggtggctta 9491601
Query: 273 agcagtgtgattgc 286
|||| || ||||||
Sbjct: 9491600 agcaatgagattgc 9491587
>gb|AI997692.1|AI997692 701670083 A. thaliana, Columbia Col-0, rosette-1 Arabidopsis
thaliana cDNA clone 701670083, mRNA sequence
Length = 594
Score = 56.0 bits (28), Expect = 1e-005
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 30 acataaccatccatttcagatttcaagcattgttc-atgtgtcgcctggataacatctgc 88
||||||||||||||| || |||||| ||||| | ||| || ||||| |||||||||||
Sbjct: 441 acataaccatccattccacatttcatgcattcncccatgagtagcctgaataacatctgc 500
Query: 89 tgtcatggctaatat 103
|||||| ||||||||
Sbjct: 501 tgtcattgctaatat 515
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 444,005
Number of Sequences: 1013581
Number of extensions: 444005
Number of successful extensions: 32807
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31876
Number of HSP's gapped (non-prelim): 930
length of query: 798
length of database: 908,940,872
effective HSP length: 20
effective length of query: 778
effective length of database: 888,669,252
effective search space: 691384678056
effective search space used: 691384678056
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)