BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115184.2.2
(682 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ354927.1|BZ354927 SALK_126030.45.80.x Arabidopsis thal... 40 0.49
gb|AV782748.1|AV782748 AV782748 RAFL5 Arabidopsis thaliana ... 40 0.49
gb|AV822102.1|AV822102 AV822102 RAFL5 Arabidopsis thaliana ... 40 0.49
gb|AV826059.1|AV826059 AV826059 RAFL8 Arabidopsis thaliana ... 40 0.49
gb|AV831682.1|AV831682 AV831682 RAFL9 Arabidopsis thaliana ... 40 0.49
gb|BP804354.1|BP804354 BP804354 RAFL16 Arabidopsis thaliana... 40 0.49
gb|BP806614.1|BP806614 BP806614 RAFL16 Arabidopsis thaliana... 40 0.49
gb|BP842704.1|BP842704 BP842704 RAFL21 Arabidopsis thaliana... 40 0.49
gb|BP849545.1|BP849545 BP849545 RAFL21 Arabidopsis thaliana... 40 0.49
gb|BP858269.1|BP858269 BP858269 RAFL21 Arabidopsis thaliana... 40 0.49
gb|BP868979.1|BP868979 BP868979 RAFL21 Arabidopsis thaliana... 40 0.49
gb|AY045661.1| Arabidopsis thaliana AT5g01350/T10O8_60 mRNA... 40 0.49
gb|AF375457.1| Arabidopsis thaliana AT5g01350/T10O8_60 mRNA... 40 0.49
gb|AC079604.5|AC079604 Arabidopsis thaliana chromosome 1 BA... 40 0.49
gb|AC079131.4|AC079131 Arabidopsis thaliana chromosome 1 BA... 40 0.49
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.49
emb|AL161746.2|ATT10O8 Arabidopsis thaliana DNA chromosome ... 40 0.49
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 40 0.49
ref|NM_120213.1| Arabidopsis thaliana unknown protein AT5G0... 40 0.49
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.49
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.49
>gb|BZ354927.1|BZ354927 SALK_126030.45.80.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_126030.45.80.x,
DNA sequence
Length = 276
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 24 cccaacaagatctgcgtcaagtcc 1
>gb|AV782748.1|AV782748 AV782748 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-01-A11 3',
mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 464 cccaacaagatctgcgtcaagtcc 487
>gb|AV822102.1|AV822102 AV822102 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-01-A11 5',
mRNA sequence
Length = 526
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 27 cccaacaagatctgcgtcaagtcc 4
>gb|AV826059.1|AV826059 AV826059 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-08-J06 5',
mRNA sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 27 cccaacaagatctgcgtcaagtcc 4
>gb|AV831682.1|AV831682 AV831682 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-94-D24 5',
mRNA sequence
Length = 434
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 27 cccaacaagatctgcgtcaagtcc 4
>gb|BP804354.1|BP804354 BP804354 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-01-I11 5',
mRNA sequence
Length = 377
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 25 cccaacaagatctgcgtcaagtcc 2
>gb|BP806614.1|BP806614 BP806614 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-10-H22 5',
mRNA sequence
Length = 409
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 25 cccaacaagatctgcgtcaagtcc 2
>gb|BP842704.1|BP842704 BP842704 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-55-L14 5',
mRNA sequence
Length = 380
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 25 cccaacaagatctgcgtcaagtcc 2
>gb|BP849545.1|BP849545 BP849545 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-09-J24 5',
mRNA sequence
Length = 385
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 25 cccaacaagatctgcgtcaagtcc 2
>gb|BP858269.1|BP858269 BP858269 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-36-K01 5',
mRNA sequence
Length = 266
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 25 cccaacaagatctgcgtcaagtcc 2
>gb|BP868979.1|BP868979 BP868979 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-86-E09 5',
mRNA sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 25 cccaacaagatctgcgtcaagtcc 2
>gb|AY045661.1| Arabidopsis thaliana AT5g01350/T10O8_60 mRNA, complete cds
Length = 532
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 26 cccaacaagatctgcgtcaagtcc 3
>gb|AF375457.1| Arabidopsis thaliana AT5g01350/T10O8_60 mRNA, complete cds
Length = 488
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 26 cccaacaagatctgcgtcaagtcc 3
>gb|AC079604.5|AC079604 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete
sequence
Length = 103637
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 636 cacacaaattattcgacaaaatat 659
|||||| |||||||||||||||||
Sbjct: 99169 cacacatattattcgacaaaatat 99146
>gb|AC079131.4|AC079131 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete
sequence
Length = 85961
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 636 cacacaaattattcgacaaaatat 659
|||||| |||||||||||||||||
Sbjct: 26791 cacacatattattcgacaaaatat 26768
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 146699 cccaacaagatctgcgtcaagtcc 146722
>emb|AL161746.2|ATT10O8 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project)
Length = 83499
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 35201 cccaacaagatctgcgtcaagtcc 35224
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 636 cacacaaattattcgacaaaatat 659
|||||| |||||||||||||||||
Sbjct: 5896753 cacacatattattcgacaaaatat 5896730
>ref|NM_120213.1| Arabidopsis thaliana unknown protein AT5G01350 mRNA, complete cds
Length = 547
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 58 cccaacaagatctgcgtcaagtcc 35
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 214 cccaacaacatctgcgtcaagtcc 237
|||||||| |||||||||||||||
Sbjct: 147142 cccaacaagatctgcgtcaagtcc 147165
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 636 cacacaaattattcgacaaaatat 659
|||||| |||||||||||||||||
Sbjct: 21540977 cacacatattattcgacaaaatat 21540954
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 276,065
Number of Sequences: 1013581
Number of extensions: 276065
Number of successful extensions: 19089
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18589
Number of HSP's gapped (non-prelim): 500
length of query: 682
length of database: 908,940,872
effective HSP length: 20
effective length of query: 662
effective length of database: 888,669,252
effective search space: 588299044824
effective search space used: 588299044824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)