BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3107376.2.2
         (1851 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL491217.1|CL491217  SAIL_553_F10.v1 SAIL Collection Arab...    42   0.34 

>gb|CL491217.1|CL491217 SAIL_553_F10.v1 SAIL Collection Arabidopsis thaliana genomic clone
            SAIL_553_F10.v1, DNA sequence
          Length = 966

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1242 cctcctcctcccgctcccgcc 1262
            |||||||||||||||||||||
Sbjct: 609  cctcctcctcccgctcccgcc 629



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 611,107
Number of Sequences: 1013581
Number of extensions: 611107
Number of successful extensions: 53473
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53471
Number of HSP's gapped (non-prelim): 2
length of query: 1851
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1830
effective length of database: 887,655,671
effective search space: 1624409877930
effective search space used: 1624409877930
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)