BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106156.2.1
(1016 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF325108.1|AF325108 Arabidopsis thaliana unknown protein... 94 6e-017
gb|AY064973.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, ... 94 6e-017
emb|AX506245.1| Sequence 940 from Patent WO0216655 94 6e-017
gb|AF083751.1| Arabidopsis thaliana clone sps542 unknown mRNA 94 6e-017
gb|BT002614.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, ... 94 6e-017
gb|AY195742.1| Arabidopsis thaliana UDP-D-xylose 4-epimeras... 94 6e-017
emb|AX651855.1| Sequence 721 from Patent WO03000898 94 6e-017
emb|BX815256.1|CNS0AAN9 Arabidopsis thaliana Full-length cD... 94 6e-017
dbj|AK220800.1| Arabidopsis thaliana mRNA for UDP-galactose... 94 6e-017
ref|NM_102799.4| Arabidopsis thaliana MUR4 (MURUS 4); catal... 94 6e-017
ref|NM_001036041.1| Arabidopsis thaliana MUR4 (MURUS 4); ca... 94 6e-017
gb|AY070487.1| Arabidopsis thaliana At2g34850/F19I3.8 mRNA,... 90 9e-016
gb|AY091699.1| Arabidopsis thaliana At2g34850/F19I3.8 mRNA,... 90 9e-016
ref|NM_179907.1| Arabidopsis thaliana NAD binding / catalyt... 90 9e-016
gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I... 88 3e-015
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 88 3e-015
gb|B12819.1|B12819 T12E9-T7 TAMU Arabidopsis thaliana genom... 66 1e-008
gb|B28207.1|B28207 T5A21TRB TAMU Arabidopsis thaliana genom... 66 1e-008
gb|AA597338.1|AA597338 29609 Lambda-PRL2 Arabidopsis thalia... 66 1e-008
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 66 1e-008
gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5... 66 1e-008
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 66 1e-008
gb|CL488579.1|CL488579 SAIL_511_B08.v1 SAIL Collection Arab... 58 3e-006
gb|BZ662340.1|BZ662340 SALK_025826.50.25.x Arabidopsis thal... 56 1e-005
gb|AV553148.1|AV553148 AV553148 Arabidopsis thaliana roots ... 56 1e-005
dbj|AB017065.1| Arabidopsis thaliana genomic DNA, chromosom... 56 1e-005
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 56 1e-005
ref|NM_123815.1| Arabidopsis thaliana DUR (DEFECTIVE UGE IN... 56 1e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 56 1e-005
gb|BH758606.1|BH758606 SALK_028357.56.00.x Arabidopsis thal... 48 0.003
gb|BP840233.1|BP840233 BP840233 RAFL19 Arabidopsis thaliana... 42 0.18
>gb|AF325108.1|AF325108 Arabidopsis thaliana unknown protein (T5I8.7) mRNA, complete cds
Length = 1260
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1058 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 999
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 998 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 939
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 938 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 879
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 878 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 819
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 818 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 759
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 758 gacccaatcacattgaaatatct 736
>gb|AY064973.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, complete cds
Length = 1863
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1394 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 1335
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 1334 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 1275
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 1274 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 1215
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 1214 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 1155
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 1154 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 1095
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 1094 gacccaatcacattgaaatatct 1072
>emb|AX506245.1| Sequence 940 from Patent WO0216655
Length = 1239
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1037 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 978
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 977 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 918
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 917 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 858
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 857 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 798
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 797 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 738
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 737 gacccaatcacattgaaatatct 715
>gb|AF083751.1| Arabidopsis thaliana clone sps542 unknown mRNA
Length = 1924
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1408 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 1349
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 1348 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 1289
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 1288 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 1229
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 1228 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 1169
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 1168 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 1109
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 1108 gacccaatcacattgaaatatct 1086
>gb|BT002614.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, complete cds
Length = 1260
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1058 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 999
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 998 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 939
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 938 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 879
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 878 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 819
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 818 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 759
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 758 gacccaatcacattgaaatatct 736
>gb|AY195742.1| Arabidopsis thaliana UDP-D-xylose 4-epimerase (MUR4) mRNA, complete
cds
Length = 1579
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1096 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 1037
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 1036 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 977
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 976 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 917
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 916 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 857
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 856 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 797
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 796 gacccaatcacattgaaatatct 774
>emb|AX651855.1| Sequence 721 from Patent WO03000898
Length = 1239
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1037 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 978
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 977 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 918
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 917 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 858
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 857 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 798
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 797 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 738
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 737 gacccaatcacattgaaatatct 715
>emb|BX815256.1|CNS0AAN9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS47ZB07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1831
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1355 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 1296
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 1295 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 1236
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 1235 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 1176
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 1175 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 1116
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 1115 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 1056
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 1055 gacccaatcacattgaaatatct 1033
>dbj|AK220800.1| Arabidopsis thaliana mRNA for UDP-galactose 4-epimerase-like
protein, complete cds, clone: RAFL22-29-J05
Length = 1015
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 536 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 477
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 476 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 417
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 416 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 357
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 356 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 297
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 296 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 237
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 236 gacccaatcacattgaaatatct 214
>ref|NM_102799.4| Arabidopsis thaliana MUR4 (MURUS 4); catalytic AT1G30620 (MUR4)
transcript variant AT1G30620.1 mRNA, complete cds
Length = 1884
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1408 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 1349
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 1348 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 1289
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 1288 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 1229
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 1228 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 1169
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 1168 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 1109
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 1108 gacccaatcacattgaaatatct 1086
>ref|NM_001036041.1| Arabidopsis thaliana MUR4 (MURUS 4); catalytic AT1G30620 (MUR4)
transcript variant AT1G30620.2 mRNA, complete cds
Length = 1900
Score = 93.7 bits (47), Expect = 6e-017
Identities = 254/323 (78%)
Strand = Plus / Minus
Query: 451 ccagttgccttcttgcaggcatcaacaaactcattaactgagcgacctcttcctgttcca 510
|||||||| |||||||| || ||||||||||| || || |||| |||| | || || |||
Sbjct: 1454 ccagttgctttcttgcacgcctcaacaaactctttcaccgagctacctttcccggtgcca 1395
Query: 511 acattgtaaatgccgacttttctaggctctgccttgttgagtgctttcacatgagcatca 570
|||||||| || || ||||| | || | |||||| | || ||||| ||||||||||||
Sbjct: 1394 acattgtagattccaactttgcgtggttttgccttttgaagagctttaacatgagcatca 1335
Query: 571 actaaatctgtgacatcaatataatctcttatgcaggttccatcagctgtgggataatct 630
|| ||||| ||||||||||| ||||| | || ||| ||||||||||| || || |||
Sbjct: 1334 accaaatcagtgacatcaatgtaatcccgtacgcaagttccatcagcggttttgtagtct 1275
Query: 631 gttcctttaacctttaatcctggaatgactcctaatgctgcatcaaagcaagccccagat 690
|||||||| | || || || || |||| || |||||||||||| ||||| || ||
Sbjct: 1274 gttcctttgatctgtaggccaggcatgatgccacgtgctgcatcaaaacaagcaccggag 1215
Query: 691 atccgaccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtca 750
|| || ||||||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct: 1214 atgcgtccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcg 1155
Query: 751 gatccaataacattgaaatatct 773
|| ||||| ||||||||||||||
Sbjct: 1154 gacccaatcacattgaaatatct 1132
>gb|AY070487.1| Arabidopsis thaliana At2g34850/F19I3.8 mRNA, complete cds
Length = 1125
Score = 89.7 bits (45), Expect = 9e-016
Identities = 177/221 (80%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| || || ||||||||||| ||||| | || || || |||
Sbjct: 664 gctttaacatgagcatcaaccaagtcggtgacatcaatgtaatcacgtacacaagtccca 605
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||| | || || ||||||||||||| || | || ||||||| ||| ||| |||
Sbjct: 604 tcaacagtcttgtagtctgttcctttaatctgcagcccgggaatgatgcctcgtgcagca 545
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
||||||||||| ||||| ||||| |||||||| | ||||| || || ||||| ||||||
Sbjct: 544 tcaaagcaagcaccagagatccgtccatgctcactgagttcaggtcttggagcttcacct 485
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
| ||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 484 agtctaccctcaggatcagacccaatcacattgaaatatct 444
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 400 atgatatcttctgccatctttttagcctttccatatggattgat 357
>gb|AY091699.1| Arabidopsis thaliana At2g34850/F19I3.8 mRNA, complete cds
Length = 711
Score = 89.7 bits (45), Expect = 9e-016
Identities = 177/221 (80%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| || || ||||||||||| ||||| | || || || |||
Sbjct: 410 gctttaacatgagcatcaaccaagtcggtgacatcaatgtaatcacgtacacaagtccca 351
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||| | || || ||||||||||||| || | || ||||||| ||| ||| |||
Sbjct: 350 tcaacagtcttgtagtctgttcctttaatctgcagcccgggaatgatgcctcgtgcagca 291
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
||||||||||| ||||| ||||| |||||||| | ||||| || || ||||| ||||||
Sbjct: 290 tcaaagcaagcaccagagatccgtccatgctcactgagttcaggtcttggagcttcacct 231
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
| ||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 230 agtctaccctcaggatcagacccaatcacattgaaatatct 190
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 146 atgatatcttctgccatctttttagcctttccatatggattgat 103
>ref|NM_179907.1| Arabidopsis thaliana NAD binding / catalytic AT2G34850 mRNA,
complete cds
Length = 1106
Score = 89.7 bits (45), Expect = 9e-016
Identities = 177/221 (80%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| || || ||||||||||| ||||| | || || || |||
Sbjct: 645 gctttaacatgagcatcaaccaagtcggtgacatcaatgtaatcacgtacacaagtccca 586
Query: 613 tcagctgtgggataatctgttcctttaacctttaatcctggaatgactcctaatgctgca 672
||| | || || ||||||||||||| || | || ||||||| ||| ||| |||
Sbjct: 585 tcaacagtcttgtagtctgttcctttaatctgcagcccgggaatgatgcctcgtgcagca 526
Query: 673 tcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctcacct 732
||||||||||| ||||| ||||| |||||||| | ||||| || || ||||| ||||||
Sbjct: 525 tcaaagcaagcaccagagatccgtccatgctcactgagttcaggtcttggagcttcacct 466
Query: 733 aatcttccctcagggtcagatccaataacattgaaatatct 773
| ||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 465 agtctaccctcaggatcagacccaatcacattgaaatatct 425
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 381 atgatatcttctgccatctttttagcctttccatatggattgat 338
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete
sequence
Length = 108484
Score = 87.7 bits (44), Expect = 3e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||||||||| ||||| ||||| |||||||| | ||||| || || ||||| |||
Sbjct: 34050 gcatcaaagcaagcaccagagatccgtccatgctcactgagttcaggtcttggagcttca 34109
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
|||| ||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 34110 cctagtctaccctcaggatcagacccaatcacattgaaatatct 34153
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 34300 atgatatcttctgccatctttttagcctttccatatggattgat 34343
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatc 596
||||| |||||||||||||| || || ||||||||||| |||||
Sbjct: 33856 gctttaacatgagcatcaaccaagtcggtgacatcaatgtaatc 33899
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 87.7 bits (44), Expect = 3e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagcctca 729
|||||||||||||| ||||| ||||| |||||||| | ||||| || || ||||| |||
Sbjct: 14712452 gcatcaaagcaagcaccagagatccgtccatgctcactgagttcaggtcttggagcttca 14712511
Query: 730 cctaatcttccctcagggtcagatccaataacattgaaatatct 773
|||| ||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 14712512 cctagtctaccctcaggatcagacccaatcacattgaaatatct 14712555
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 14712702 atgatatcttctgccatctttttagcctttccatatggattgat 14712745
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatc 596
||||| |||||||||||||| || || ||||||||||| |||||
Sbjct: 14712258 gctttaacatgagcatcaaccaagtcggtgacatcaatgtaatc 14712301
>gb|B12819.1|B12819 T12E9-T7 TAMU Arabidopsis thaliana genomic clone T12E9, DNA
sequence
Length = 1153
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 205 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgtacgcaagttcca 146
Query: 613 tcagc 617
|||||
Sbjct: 145 tcagc 141
>gb|B28207.1|B28207 T5A21TRB TAMU Arabidopsis thaliana genomic clone T5A21, DNA
sequence
Length = 604
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 427 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgtacgcaagttcca 368
Query: 613 tcagc 617
|||||
Sbjct: 367 tcagc 363
>gb|AA597338.1|AA597338 29609 Lambda-PRL2 Arabidopsis thaliana cDNA clone 195M20T7, mRNA
sequence
Length = 270
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 144 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgtacgcaagttcca 203
Query: 613 tcagc 617
|||||
Sbjct: 204 tcagc 208
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 10866342 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgtacgcaagttcca 10866283
Query: 613 tcagc 617
|||||
Sbjct: 10866282 tcagc 10866278
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 666 tgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagc 725
|||||||||||| ||||| || || || || ||||||||||| || || || || || ||
Sbjct: 10865825 tgctgcatcaaaacaagcaccggagatgcgtccatgctctcgcagctcaggtcttggggc 10865766
Query: 726 ctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 10865765 ttcacccaatctgccctctggatcggacccaatcacattgaaatatct 10865718
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence
Length = 96183
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 32813 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgtacgcaagttcca 32754
Query: 613 tcagc 617
|||||
Sbjct: 32753 tcagc 32749
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 666 tgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagc 725
|||||||||||| ||||| || || || || ||||||||||| || || || || || ||
Sbjct: 32296 tgctgcatcaaaacaagcaccggagatgcgtccatgctctcgcagctcaggtcttggggc 32237
Query: 726 ctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 32236 ttcacccaatctgccctctggatcggacccaatcacattgaaatatct 32189
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||| ||||||
Sbjct: 10857544 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgtacgcaagttcca 10857485
Query: 613 tcagc 617
|||||
Sbjct: 10857484 tcagc 10857480
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 666 tgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagc 725
|||||||||||| ||||| || || || || ||||||||||| || || || || || ||
Sbjct: 10857027 tgctgcatcaaaacaagcaccggagatgcgtccatgctctcgcagctcaggtcttggggc 10856968
Query: 726 ctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 10856967 ttcacccaatctgccctctggatcggacccaatcacattgaaatatct 10856920
>gb|CL488579.1|CL488579 SAIL_511_B08.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_511_B08.v1, DNA sequence
Length = 930
Score = 58.0 bits (29), Expect = 3e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatctcttatgcaggttcca 612
||||| |||||||||||||| ||||| ||||||||||| ||||| | | ||| ||||||
Sbjct: 618 gctttaacatgagcatcaaccaaatcagtgacatcaatgtaatcccgaacgcaagttcca 677
Query: 613 tcagc 617
|||||
Sbjct: 678 tcagc 682
>gb|BZ662340.1|BZ662340 SALK_025826.50.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_025826.50.25.x,
DNA sequence
Length = 189
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 850 atgatatcctctgccattttcttagcttttccatatggattgat 893
|||||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 169 atgatatcttctgccatctttttagcctttccatatggattgat 126
>gb|AV553148.1|AV553148 AV553148 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ55b05R 5', mRNA sequence
Length = 568
Score = 56.0 bits (28), Expect = 1e-005
Identities = 88/108 (81%)
Strand = Plus / Minus
Query: 666 tgctgcatcaaagcaagccccagatatccgaccatgctctcgaagttctggcctaggagc 725
|||||||||||| ||||| || || || || ||||||||||| || || || || || ||
Sbjct: 498 tgctgcatcaaaacaagcaccggagatgcgtccatgctctcgcagctcaggtcttggggc 439
Query: 726 ctcacctaatcttccctcagggtcagatccaataacattgaaatatct 773
||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 438 ttcacccaatctgccctctggatcggacccaatcacattgaaatatct 391
>dbj|AB017065.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16
Length = 61290
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggatt 890
||||||||||| | || |||||||||||||| || ||||||||||| ||||||||
Sbjct: 36170 tttgagaaatccaagatcatatcctctgccatctttttagcttttccgtatggatt 36115
Score = 50.1 bits (25), Expect = 8e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 494 gacctcttcctgttccaacattgtaaatgccgacttttctaggct 538
||||| |||| |||||||||||||| || |||||||||| |||||
Sbjct: 36656 gaccttttccggttccaacattgtagataccgacttttcgaggct 36612
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggatt 890
||||||||||| | || |||||||||||||| || ||||||||||| ||||||||
Sbjct: 16285446 tttgagaaatccaagatcatatcctctgccatctttttagcttttccgtatggatt 16285391
Score = 50.1 bits (25), Expect = 8e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 494 gacctcttcctgttccaacattgtaaatgccgacttttctaggct 538
||||| |||| |||||||||||||| || |||||||||| |||||
Sbjct: 16285932 gaccttttccggttccaacattgtagataccgacttttcgaggct 16285888
>ref|NM_123815.1| Arabidopsis thaliana DUR (DEFECTIVE UGE IN ROOT); NAD binding /
UDP-glucose 4-epimerase/ catalytic AT5G44480 (DUR) mRNA,
complete cds
Length = 1311
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggatt 890
||||||||||| | || |||||||||||||| || ||||||||||| ||||||||
Sbjct: 779 tttgagaaatccaagatcatatcctctgccatctttttagcttttccgtatggatt 724
Score = 46.1 bits (23), Expect = 0.012
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 500 ttcctgttccaacattgtaaatgccgacttttctaggct 538
|||| |||||||||||||| || |||||||||| |||||
Sbjct: 1081 ttccggttccaacattgtagataccgacttttcgaggct 1043
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 835 tttgagaaatctattatgatatcctctgccattttcttagcttttccatatggatt 890
||||||||||| | || |||||||||||||| || ||||||||||| ||||||||
Sbjct: 17939952 tttgagaaatccaagatcatatcctctgccatctttttagcttttccgtatggatt 17939897
Score = 50.1 bits (25), Expect = 8e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 494 gacctcttcctgttccaacattgtaaatgccgacttttctaggct 538
||||| |||| |||||||||||||| || |||||||||| |||||
Sbjct: 17940438 gaccttttccggttccaacattgtagataccgacttttcgaggct 17940394
>gb|BH758606.1|BH758606 SALK_028357.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_028357.56.00.x,
DNA sequence
Length = 334
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 553 gctttcacatgagcatcaactaaatctgtgacatcaatataatc 596
||||| |||||||||||||| || || ||||||||||| |||||
Sbjct: 83 gctttaacatgagcatcaaccaagtcggtgacatcaatgtaatc 126
Score = 46.1 bits (23), Expect = 0.012
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 670 gcatcaaagcaagccccagatatccgaccatgctc 704
|||||||||||||| ||||| ||||| ||||||||
Sbjct: 278 gcatcaaagcaagcaccagagatccgtccatgctc 312
>gb|BP840233.1|BP840233 BP840233 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-29-J05 5',
mRNA sequence
Length = 389
Score = 42.1 bits (21), Expect = 0.18
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 697 ccatgctctcgaagttctggcctaggagcctcacctaatcttccctcagggtcagatcca 756
||||||||||| || || || || || || ||||| ||||| ||||| || || || |||
Sbjct: 292 ccatgctctcgcagctcaggtcttggggcttcacccaatctgccctctggatcggaccca 233
Query: 757 ataacattgaaatatct 773
|| ||||||||||||||
Sbjct: 232 atcacattgaaatatct 216
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 548,729
Number of Sequences: 1013581
Number of extensions: 548729
Number of successful extensions: 40876
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39514
Number of HSP's gapped (non-prelim): 1351
length of query: 1016
length of database: 908,940,872
effective HSP length: 20
effective length of query: 996
effective length of database: 888,669,252
effective search space: 885114574992
effective search space used: 885114574992
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)