BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3106097.2.2
         (1005 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BH854840.1|BH854840  SALK_088421.53.90.x Arabidopsis thal...    42   0.18 
gb|AC079283.4|AC079283  Arabidopsis thaliana chromosome 1 BA...    42   0.18 
emb|AJ838678.1|  Arabidopsis thaliana T-DNA flanking sequenc...    42   0.18 
gb|AE005173.1|  Arabidopsis thaliana chromosome 1, bottom ar...    42   0.18 
ref|NC_003070.5|  Arabidopsis thaliana chromosome 1, complet...    42   0.18 

>gb|BH854840.1|BH854840 SALK_088421.53.90.x Arabidopsis thaliana TDNA insertion lines
           Arabidopsis thaliana genomic clone SALK_088421.53.90.x,
           DNA sequence
          Length = 150

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 tgagaaaaacaaagaaagggg 214
           |||||||||||||||||||||
Sbjct: 143 tgagaaaaacaaagaaagggg 123



>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete
             sequence
          Length = 39456

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 194   tgagaaaaacaaagaaagggg 214
             |||||||||||||||||||||
Sbjct: 12985 tgagaaaaacaaagaaagggg 12965



>emb|AJ838678.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
           396H09
          Length = 330

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 tgagaaaaacaaagaaagggg 214
           |||||||||||||||||||||
Sbjct: 220 tgagaaaaacaaagaaagggg 200



>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
          Length = 14668883

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 194      tgagaaaaacaaagaaagggg 214
                |||||||||||||||||||||
Sbjct: 13100791 tgagaaaaacaaagaaagggg 13100771



>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
          Length = 30432563

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 194      tgagaaaaacaaagaaagggg 214
                |||||||||||||||||||||
Sbjct: 28864472 tgagaaaaacaaagaaagggg 28864452



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 543,656
Number of Sequences: 1013581
Number of extensions: 543656
Number of successful extensions: 41658
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41212
Number of HSP's gapped (non-prelim): 446
length of query: 1005
length of database: 908,940,872
effective HSP length: 20
effective length of query: 985
effective length of database: 888,669,252
effective search space: 875339213220
effective search space used: 875339213220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)