BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3099514.2.1
(547 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|F13913.1|F13913 ATTS4835 Perp-dry-seedA Arabidopsis thal... 84 3e-014
gb|AV784361.1|AV784361 AV784361 RAFL5 Arabidopsis thaliana ... 84 3e-014
gb|AV793987.1|AV793987 AV793987 RAFL8 Arabidopsis thaliana ... 84 3e-014
gb|AV795270.1|AV795270 AV795270 RAFL8 Arabidopsis thaliana ... 84 3e-014
gb|AV803373.1|AV803373 AV803373 RAFL9 Arabidopsis thaliana ... 84 3e-014
gb|AV561055.1|AV561055 AV561055 Arabidopsis thaliana green ... 84 3e-014
gb|BP601056.1|BP601056 BP601056 RAFL16 Arabidopsis thaliana... 84 3e-014
gb|BP606576.1|BP606576 BP606576 RAFL16 Arabidopsis thaliana... 84 3e-014
gb|BP611450.1|BP611450 BP611450 RAFL16 Arabidopsis thaliana... 84 3e-014
gb|BP617162.1|BP617162 BP617162 RAFL16 Arabidopsis thaliana... 84 3e-014
gb|AY056784.1| Arabidopsis thaliana AT4g02280/T2H3_8 mRNA, ... 84 3e-014
gb|AY051001.1| Arabidopsis thaliana putative sucrose synthe... 84 3e-014
gb|AY142511.1| Arabidopsis thaliana putative sucrose synthe... 84 3e-014
emb|AX507720.1| Sequence 2415 from Patent WO0216655 84 3e-014
emb|BX828217.1|CNS0A2C8 Arabidopsis thaliana Full-length cD... 84 3e-014
ref|NM_116461.2| Arabidopsis thaliana UDP-glycosyltransfera... 84 3e-014
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 78 2e-012
gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3 78 2e-012
emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome... 78 2e-012
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 78 2e-012
gb|BP662434.1|BP662434 BP662434 RAFL21 Arabidopsis thaliana... 68 2e-009
gb|BP785428.1|BP785428 BP785428 RAFL7 Arabidopsis thaliana ... 62 1e-007
gb|BP607317.1|BP607317 BP607317 RAFL16 Arabidopsis thaliana... 46 0.006
gb|AQ959976.1|AQ959976 LERFA54TF LERA Arabidopsis thaliana ... 44 0.025
gb|AV783221.1|AV783221 AV783221 RAFL5 Arabidopsis thaliana ... 42 0.098
gb|AV813109.1|AV813109 AV813109 RAFL9 Arabidopsis thaliana ... 42 0.098
gb|BP583616.1|BP583616 BP583616 RAFL14 Arabidopsis thaliana... 42 0.098
gb|BP664451.1|BP664451 BP664451 RAFL21 Arabidopsis thaliana... 42 0.098
gb|BP668453.1|BP668453 BP668453 RAFL21 Arabidopsis thaliana... 42 0.098
gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III ... 42 0.098
gb|AY034958.1| Arabidopsis thaliana putative sucrose syntha... 42 0.098
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.098
emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome ... 42 0.098
ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransfera... 42 0.098
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.098
gb|BE521065.1|BE521065 M16F6XP Arabidopsis developing seed ... 40 0.39
ref|NM_124296.2| Arabidopsis thaliana SUS2 (SUCROSE SYNTHAS... 40 0.39
>gb|F13913.1|F13913 ATTS4835 Perp-dry-seedA Arabidopsis thaliana cDNA clone PAP1758 3'
similar to sucrose synthase, mRNA sequence
Length = 337
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 327 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 268
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 267 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 208
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 207 atgttctacattctcaaattccgcga 182
>gb|AV784361.1|AV784361 AV784361 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-18-M07 3',
mRNA sequence
Length = 622
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 425 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 366
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 365 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 306
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 305 atgttctacattctcaaattccgcga 280
>gb|AV793987.1|AV793987 AV793987 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-11-B11 3',
mRNA sequence
Length = 451
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 425 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 366
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 365 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 306
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 305 atgttctacattctcaaattccgcga 280
>gb|AV795270.1|AV795270 AV795270 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-16-M13 3',
mRNA sequence
Length = 449
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 412 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 353
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 352 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 293
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 292 atgttctacattctcaaattccgcga 267
>gb|AV803373.1|AV803373 AV803373 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-35-E20 3',
mRNA sequence
Length = 411
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 391 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 332
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 331 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 272
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 271 atgttctacattctcaaattccgcga 246
>gb|AV561055.1|AV561055 AV561055 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ145b12F 3', mRNA sequence
Length = 608
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 427 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 368
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 367 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 308
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 307 atgttctacattctcaaattccgcga 282
>gb|BP601056.1|BP601056 BP601056 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-48-K02 3',
mRNA sequence
Length = 447
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 427 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 368
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 367 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 308
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 307 atgttctacattctcaaattccgcga 282
>gb|BP606576.1|BP606576 BP606576 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-71-G23 3',
mRNA sequence
Length = 432
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 412 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 353
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 352 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 293
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 292 atgttctacattctcaaattccgcga 267
>gb|BP611450.1|BP611450 BP611450 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-85-M21 3',
mRNA sequence
Length = 467
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 425 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 366
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 365 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 306
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 305 atgttctacattctcaaattccgcga 280
>gb|BP617162.1|BP617162 BP617162 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-22-N04 3',
mRNA sequence
Length = 441
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 425 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 366
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 365 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 306
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 305 atgttctacattctcaaattccgcga 280
>gb|AY056784.1| Arabidopsis thaliana AT4g02280/T2H3_8 mRNA, complete cds
Length = 2898
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 2487 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 2546
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 2547 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 2606
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 2607 atgttctacattctcaaattccgcga 2632
>gb|AY051001.1| Arabidopsis thaliana putative sucrose synthetase (At4g02280) mRNA,
complete cds
Length = 2904
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 2462 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 2521
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 2522 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 2581
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 2582 atgttctacattctcaaattccgcga 2607
>gb|AY142511.1| Arabidopsis thaliana putative sucrose synthetase (At4g02280) mRNA,
complete cds
Length = 2506
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 2248 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 2307
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 2308 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 2367
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 2368 atgttctacattctcaaattccgcga 2393
>emb|AX507720.1| Sequence 2415 from Patent WO0216655
Length = 2430
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 2248 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 2307
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 2308 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 2367
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 2368 atgttctacattctcaaattccgcga 2393
>emb|BX828217.1|CNS0A2C8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH64ZE09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2686
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 2309 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 2368
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 2369 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 2428
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 2429 atgttctacattctcaaattccgcga 2454
>ref|NM_116461.2| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT4G02280 mRNA,
complete cds
Length = 2913
Score = 83.8 bits (42), Expect = 3e-014
Identities = 120/146 (82%)
Strand = Plus / Plus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 2487 atatacgaaaggtacacatggaagatatactcggagagattgatgacactagctggtgtg 2546
Query: 113 tacggtttctggaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgag 172
|| ||||||||||| ||||| ||||| | ||| | || ||||| |||| || |||||
Sbjct: 2547 tatggtttctggaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaa 2606
Query: 173 atgttctacatactgaagttccgcga 198
||||||||||| || || ||||||||
Sbjct: 2607 atgttctacattctcaaattccgcga 2632
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 77.8 bits (39), Expect = 2e-012
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 64 gtacacatggaagatatactcagagaggttgatgatactggccggggtctacggtttctg 123
||||||||||||||||||||| ||||| ||||||| ||| || || || || ||||||||
Sbjct: 997273 gtacacatggaagatatactcggagagattgatgacactagctggtgtgtatggtttctg 997332
Query: 124 gaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacat 183
||| ||||| ||||| | ||| | || ||||| |||| || ||||| |||||||||||
Sbjct: 997333 gaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaaatgttctacat 997392
Query: 184 actgaagttccgcga 198
|| || ||||||||
Sbjct: 997393 tctcaaattccgcga 997407
>gb|AF075597.1|T2H3 Arabidopsis thaliana BAC T2H3
Length = 48689
Score = 77.8 bits (39), Expect = 2e-012
Identities = 111/135 (82%)
Strand = Plus / Minus
Query: 64 gtacacatggaagatatactcagagaggttgatgatactggccggggtctacggtttctg 123
||||||||||||||||||||| ||||| ||||||| ||| || || || || ||||||||
Sbjct: 18165 gtacacatggaagatatactcggagagattgatgacactagctggtgtgtatggtttctg 18106
Query: 124 gaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacat 183
||| ||||| ||||| | ||| | || ||||| |||| || ||||| |||||||||||
Sbjct: 18105 gaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaaatgttctacat 18046
Query: 184 actgaagttccgcga 198
|| || ||||||||
Sbjct: 18045 tctcaaattccgcga 18031
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
Length = 194892
Score = 77.8 bits (39), Expect = 2e-012
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 64 gtacacatggaagatatactcagagaggttgatgatactggccggggtctacggtttctg 123
||||||||||||||||||||| ||||| ||||||| ||| || || || || ||||||||
Sbjct: 34113 gtacacatggaagatatactcggagagattgatgacactagctggtgtgtatggtttctg 34172
Query: 124 gaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacat 183
||| ||||| ||||| | ||| | || ||||| |||| || ||||| |||||||||||
Sbjct: 34173 gaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaaatgttctacat 34232
Query: 184 actgaagttccgcga 198
|| || ||||||||
Sbjct: 34233 tctcaaattccgcga 34247
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 77.8 bits (39), Expect = 2e-012
Identities = 111/135 (82%)
Strand = Plus / Plus
Query: 64 gtacacatggaagatatactcagagaggttgatgatactggccggggtctacggtttctg 123
||||||||||||||||||||| ||||| ||||||| ||| || || || || ||||||||
Sbjct: 998463 gtacacatggaagatatactcggagagattgatgacactagctggtgtgtatggtttctg 998522
Query: 124 gaagtacgtgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacat 183
||| ||||| ||||| | ||| | || ||||| |||| || ||||| |||||||||||
Sbjct: 998523 gaaatacgtatcgaaattggagcgtcgtgagactcggcgatatcttgaaatgttctacat 998582
Query: 184 actgaagttccgcga 198
|| || ||||||||
Sbjct: 998583 tctcaaattccgcga 998597
>gb|BP662434.1|BP662434 BP662434 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-11-H12 3',
mRNA sequence
Length = 432
Score = 67.9 bits (34), Expect = 2e-009
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 53 atatacgagaagtacacatggaagatatactcagagaggttgatgatactggccggggtc 112
|||||||| | ||||||||||||||||||||| ||||| ||||||| ||| || || ||
Sbjct: 423 atatacgaaaggtacacatggaagatatactc-gagagattgatgacactagctggtgtg 365
Query: 113 tacggtttctggaagtacgtgtcgaa 138
|| ||||||||||| ||||| |||||
Sbjct: 364 tatggtttctggaaatacgtatcgaa 339
>gb|BP785428.1|BP785428 BP785428 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-94-M24 3',
mRNA sequence
Length = 407
Score = 61.9 bits (31), Expect = 1e-007
Identities = 103/127 (81%)
Strand = Plus / Minus
Query: 72 ggaagatatactcagagaggttgatgatactggccggggtctacggtttctggaagtacg 131
||||||||||||| ||||| ||||||| ||| || || || || ||||||||||| ||||
Sbjct: 407 ggaagatatactcggagagattgatgacactagctggtgtgtatggtttctggaaatacg 348
Query: 132 tgtcgaagctcgagaggcgggagacgaggcgctaccttgagatgttctacatactgaagt 191
| ||||| | ||| | || ||||| |||| || ||||| ||||||||||| || || |
Sbjct: 347 tatcgaaattggagcgtcgtgagactcggcgatatcttgaaatgttctacattctcaaat 288
Query: 192 tccgcga 198
|||||||
Sbjct: 287 tccgcga 281
>gb|BP607317.1|BP607317 BP607317 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-74-G03 3',
mRNA sequence
Length = 404
Score = 46.1 bits (23), Expect = 0.006
Identities = 95/119 (79%)
Strand = Plus / Minus
Query: 80 tactcagagaggttgatgatactggccggggtctacggtttctggaagtacgtgtcgaag 139
||||| ||||| ||||||| ||| || || || || ||||||||||| ||||| |||||
Sbjct: 404 tactcggagagattgatgacactagctggtgtgtatggtttctggaaatacgtatcgaaa 345
Query: 140 ctcgagaggcgggagacgaggcgctaccttgagatgttctacatactgaagttccgcga 198
| ||| | || ||||| |||| || ||||| ||||||||||| || || ||||||||
Sbjct: 344 ttggagcgtcgtgagactcggcgatatcttgaaatgttctacattctcaaattccgcga 286
>gb|AQ959976.1|AQ959976 LERFA54TF LERA Arabidopsis thaliana genomic clone LERFA54, DNA
sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.025
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 159 ggcgctaccttgagatgttctacatactgaagttccgc 196
|||| |||||||||||||||||| |||||||| ||||
Sbjct: 135 ggcgataccttgagatgttctacgcactgaagtaccgc 172
>gb|AV783221.1|AV783221 AV783221 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-J05 3',
mRNA sequence
Length = 697
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 208 taccttgagatgttctacgcactgaagtaccgc 176
>gb|AV813109.1|AV813109 AV813109 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-77-A21 3',
mRNA sequence
Length = 402
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 214 taccttgagatgttctacgcactgaagtaccgc 182
>gb|BP583616.1|BP583616 BP583616 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-42-F03 3',
mRNA sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 255 taccttgagatgttctacgcactgaagtaccgc 223
>gb|BP664451.1|BP664451 BP664451 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-12-F23 3',
mRNA sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 253 taccttgagatgttctacgcactgaagtaccgc 221
>gb|BP668453.1|BP668453 BP668453 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-27-E12 3',
mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 258 taccttgagatgttctacgcactgaagtaccgc 226
>gb|AC074227.1|AC074227 Arabidopsis thaliana chromosome III clone TAMU-T15O15, *** SEQUENCING
IN PROGRESS ***, 3 unordered pieces
Length = 80970
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 11237 taccttgagatgttctacgcactgaagtaccgc 11269
>gb|AY034958.1| Arabidopsis thaliana putative sucrose synthase (At3g43190) mRNA,
complete cds
Length = 1798
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 1573 taccttgagatgttctacgcactgaagtaccgc 1605
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 15143413 taccttgagatgttctacgcactgaagtaccgc 15143381
>emb|AL353871.1|ATF7K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F7K15
Length = 110800
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 15011 taccttgagatgttctacgcactgaagtaccgc 14979
>ref|NM_114187.3| Arabidopsis thaliana UDP-glycosyltransferase/ sucrose synthase/
transferase, transferring glycosyl groups AT3G43190 mRNA,
complete cds
Length = 2717
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 2509 taccttgagatgttctacgcactgaagtaccgc 2541
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.098
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 164 taccttgagatgttctacatactgaagttccgc 196
|||||||||||||||||| |||||||| ||||
Sbjct: 15190360 taccttgagatgttctacgcactgaagtaccgc 15190328
>gb|BE521065.1|BE521065 M16F6XP Arabidopsis developing seed Arabidopsis thaliana cDNA clone
M16F6 3', mRNA sequence
Length = 403
Score = 40.1 bits (20), Expect = 0.39
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 15 atcactgggtgaaaatatctggagcagggctgcagcgcatatacgagaagtacacatgga 74
|||| ||||| ||||| |||| || |||||| |||| || || || | |||||||||||
Sbjct: 311 atcattgggttaaaatctctgaaggagggctcaagcgaatctatgaaaggtacacatgga 252
Query: 75 agatatactcagagag 90
||| |||||||||||
Sbjct: 251 agaagtactcagagag 236
>ref|NM_124296.2| Arabidopsis thaliana SUS2 (SUCROSE SYNTHASE 2);
UDP-glycosyltransferase/ sucrose synthase/ transferase,
transferring glycosyl groups AT5G49190 (SUS2) mRNA,
complete cds
Length = 2511
Score = 40.1 bits (20), Expect = 0.39
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 15 atcactgggtgaaaatatctggagcagggctgcagcgcatatacgagaagtacacatgga 74
|||| ||||| ||||| |||| || |||||| |||| || || || | |||||||||||
Sbjct: 2201 atcattgggttaaaatctctgaaggagggctcaagcgaatctatgaaaggtacacatgga 2260
Query: 75 agatatactcagagag 90
||| |||||||||||
Sbjct: 2261 agaagtactcagagag 2276
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,362
Number of Sequences: 1013581
Number of extensions: 198362
Number of successful extensions: 12441
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12086
Number of HSP's gapped (non-prelim): 333
length of query: 547
length of database: 908,940,872
effective HSP length: 20
effective length of query: 527
effective length of database: 888,669,252
effective search space: 468328695804
effective search space used: 468328695804
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)