BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|H36086.1|H36086 14608 Lambda-PRL2 Arabidopsis thaliana c... 46 0.021
gb|AI992941.1|AI992941 701495092 A. thaliana, Ohio State cl... 46 0.021
gb|CB261138.1|CB261138 27-E9407-012-002-E16-t7r MPIZ-ADIS-0... 46 0.021
gb|BP816736.1|BP816736 BP816736 RAFL19 Arabidopsis thaliana... 46 0.021
gb|BP824651.1|BP824651 BP824651 RAFL19 Arabidopsis thaliana... 46 0.021
gb|BP828330.1|BP828330 BP828330 RAFL19 Arabidopsis thaliana... 46 0.021
gb|AY039911.1| Arabidopsis thaliana putative sucrose-phosph... 46 0.021
gb|AY079334.1| Arabidopsis thaliana putative sucrose-phosph... 46 0.021
emb|CQ805578.1| Sequence 1989 from Patent WO2004035798 46 0.021
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.021
emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome ... 46 0.021
emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5... 46 0.021
ref|NM_122035.1| Arabidopsis thaliana transferase, transfer... 46 0.021
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.021
gb|BE845075.1|BE845075 AD06D01T7 AD A. thaliana (Col-0 gl1)... 44 0.085
gb|AY069868.1| Arabidopsis thaliana AT5g11110/T5K6_100 mRNA... 44 0.085
gb|BT002697.1| Arabidopsis thaliana At5g11110/T5K6_100 gene... 44 0.085
ref|NM_121149.3| Arabidopsis thaliana unknown protein AT5G1... 44 0.085
emb|AL392144.1|ATMAJ23 Arabidopsis thaliana DNA chromosome ... 42 0.34
>gb|H36086.1|H36086 14608 Lambda-PRL2 Arabidopsis thaliana cDNA clone 173J24T7, mRNA
sequence
Length = 552
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 252 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 193
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 192 ccaccattttttgtagcaa 174
>gb|AI992941.1|AI992941 701495092 A. thaliana, Ohio State clone set Arabidopsis thaliana cDNA
clone 701495092, mRNA sequence
Length = 482
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 261 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 202
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 201 ccaccattttttgtagcaa 183
>gb|CB261138.1|CB261138 27-E9407-012-002-E16-t7r MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769E162Q 5-PRIME, mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 266 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 207
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 206 ccaccattttttgtagcaa 188
>gb|BP816736.1|BP816736 BP816736 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-42-O08 5',
mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 109 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 50
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 49 ccaccattttttgtagcaa 31
>gb|BP824651.1|BP824651 BP824651 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-10-E07 5',
mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 109 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 50
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 49 ccaccattttttgtagcaa 31
>gb|BP828330.1|BP828330 BP828330 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-78-H21 5',
mRNA sequence
Length = 378
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 109 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 50
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 49 ccaccattttttgtagcaa 31
>gb|AY039911.1| Arabidopsis thaliana putative sucrose-phosphate synthase (At5g20280)
mRNA, complete cds
Length = 3494
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 1931 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 1872
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 1871 ccaccattttttgtagcaa 1853
>gb|AY079334.1| Arabidopsis thaliana putative sucrose-phosphate synthase (At5g20280)
mRNA, complete cds
Length = 3163
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 1865 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 1806
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 1805 ccaccattttttgtagcaa 1787
>emb|CQ805578.1| Sequence 1989 from Patent WO2004035798
Length = 3132
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 1865 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 1806
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 1805 ccaccattttttgtagcaa 1787
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacct 1716
||||||||||| |||||||| || |||||||| || |||||||
Sbjct: 3352388 tgctgatcatgaggatcaactagaagaccattgtcaagaacct 3352346
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 554 gttgtctgtttctttctttct 574
|||||||||||||||||||||
Sbjct: 3180461 gttgtctgtttctttctttct 3180441
>emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome 5, BAC clone F2I11 (ESSA project)
Length = 110992
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacct 1716
||||||||||| |||||||| || |||||||| || |||||||
Sbjct: 2179 tgctgatcatgaggatcaactagaagaccattgtcaagaacct 2137
>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project)
Length = 96379
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacct 1716
||||||||||| |||||||| || |||||||| || |||||||
Sbjct: 90558 tgctgatcatgaggatcaactagaagaccattgtcaagaacct 90516
>ref|NM_122035.1| Arabidopsis thaliana transferase, transferring glycosyl groups
AT5G20280 mRNA, complete cds
Length = 3478
Score = 46.1 bits (23), Expect = 0.021
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacctgataaatttcaacagga 1733
||||||||||| ||||| ||||| || ||||| ||||| ||| | | ||| || ||||||
Sbjct: 1931 tgctgatcatgaggatccacaagaaggccattatccaggacccggtgaatatctacagga 1872
Query: 1734 gccccattttttgttgcaa 1752
| ||||||||||| ||||
Sbjct: 1871 ccaccattttttgtagcaa 1853
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.021
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacct 1716
||||||||||| |||||||| || |||||||| || |||||||
Sbjct: 3539419 tgctgatcatgaggatcaactagaagaccattgtcaagaacct 3539377
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 554 gttgtctgtttctttctttct 574
|||||||||||||||||||||
Sbjct: 3367493 gttgtctgtttctttctttct 3367473
>gb|BE845075.1|BE845075 AD06D01T7 AD A. thaliana (Col-0 gl1) subtracted library enriched for
salt-induced transcripts;10-14 day seedlings 4h 160mM
NaCl stress Arabidopsis thaliana cDNA clone AD06D01
similar to SUCROSE-PHOSPHATE SYNTHASE 1, mRNA sequence
Length = 431
Score = 44.1 bits (22), Expect = 0.085
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacc 1715
||||||||||| |||||||| || |||||||| || ||||||
Sbjct: 242 tgctgatcatgaggatcaactagaagaccattgtcaagaacc 201
>gb|AY069868.1| Arabidopsis thaliana AT5g11110/T5K6_100 mRNA, complete cds
Length = 2803
Score = 44.1 bits (22), Expect = 0.085
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacc 1715
||||||||||| |||||||| || |||||||| || ||||||
Sbjct: 1427 tgctgatcatgaggatcaactagaagaccattgtcaagaacc 1386
>gb|BT002697.1| Arabidopsis thaliana At5g11110/T5K6_100 gene, complete cds
Length = 2685
Score = 44.1 bits (22), Expect = 0.085
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacc 1715
||||||||||| |||||||| || |||||||| || ||||||
Sbjct: 1412 tgctgatcatgaggatcaactagaagaccattgtcaagaacc 1371
>ref|NM_121149.3| Arabidopsis thaliana unknown protein AT5G11110 mRNA, complete cds
Length = 3576
Score = 44.1 bits (22), Expect = 0.085
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 1674 tgctgatcatggggatcaacaaggagaccattttccagaacc 1715
||||||||||| |||||||| || |||||||| || ||||||
Sbjct: 2071 tgctgatcatgaggatcaactagaagaccattgtcaagaacc 2030
>emb|AL392144.1|ATMAJ23 Arabidopsis thaliana DNA chromosome 5, P1 clone MAJ23 (ESSA project)
Length = 42694
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 554 gttgtctgtttctttctttct 574
|||||||||||||||||||||
Sbjct: 7494 gttgtctgtttctttctttct 7474
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,090,072
Number of Sequences: 1013581
Number of extensions: 1090072
Number of successful extensions: 88012
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86854
Number of HSP's gapped (non-prelim): 1158
length of query: 1829
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1808
effective length of database: 887,655,671
effective search space: 1604881453168
effective search space used: 1604881453168
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)