BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067213.2.1
(924 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20... 125 1e-026
gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, compl... 125 1e-026
gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17... 121 2e-025
gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA,... 121 2e-025
gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, comp... 121 2e-025
gb|AY170845.1| Arabidopsis thaliana putative membrane prote... 121 2e-025
ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASC... 121 2e-025
gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20... 117 4e-024
ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1)... 117 4e-024
emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cD... 113 6e-023
gb|DQ069818.1| Arabidopsis thaliana At2g18460 mRNA, partial... 100 8e-019
ref|NM_127402.2| Arabidopsis thaliana LCV3 AT2G18460 (LCV3)... 100 8e-019
ref|NM_201755.1| Arabidopsis thaliana LCV3 AT2G18460 (LCV3)... 100 8e-019
gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana ... 98 3e-018
gb|AV824257.1|AV824257 AV824257 RAFL6 Arabidopsis thaliana ... 98 3e-018
gb|AV550281.1|AV550281 AV550281 Arabidopsis thaliana roots ... 98 3e-018
gb|AV550571.1|AV550571 AV550571 Arabidopsis thaliana roots ... 98 3e-018
gb|AV831711.1|AV831711 AV831711 RAFL9 Arabidopsis thaliana ... 86 1e-014
emb|BX002464.1| Arabidopsis thaliana T-DNA flanking sequenc... 82 2e-013
gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G1... 82 2e-013
emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cD... 82 2e-013
emb|BX820909.1|CNS0A9PK Arabidopsis thaliana Full-length cD... 82 2e-013
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 82 2e-013
emb|AL091316.1|CNS00UQE Arabidopsis thaliana genome survey ... 80 8e-013
gb|BP816410.1|BP816410 BP816410 RAFL19 Arabidopsis thaliana... 76 1e-011
gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green ... 74 5e-011
gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D... 72 2e-010
gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower... 66 1e-008
gb|BP812408.1|BP812408 BP812408 RAFL19 Arabidopsis thaliana... 64 5e-008
gb|BP796410.1|BP796410 BP796410 RAFL5 Arabidopsis thaliana ... 54 4e-005
gb|N37582.1|N37582 18809 Lambda-PRL2 Arabidopsis thaliana c... 46 0.011
gb|BP797687.1|BP797687 BP797687 RAFL14 Arabidopsis thaliana... 44 0.042
gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-ph... 44 0.042
gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots ... 42 0.17
gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green ... 42 0.17
gb|BP859667.1|BP859667 BP859667 RAFL21 Arabidopsis thaliana... 42 0.17
>gb|AY128911.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 850
Score = 125 bits (63), Expect = 1e-026
Identities = 309/391 (79%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 542 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 483
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 482 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 423
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 422 tagatgtgacgaacaaatggcatccgcttgataaaccactctcccaagttcagaaccgat 363
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| ||||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 362 gcccccagccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 303
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||||||||||||| ||| | ||||| ||||||||||||||||||||
Sbjct: 302 aaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaagaatccatcg 243
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || | ||||| || | ||| || || | || || |||
Sbjct: 242 acaaagtgaataaaccaccatgttgtatagaaagtaactgcaataggaagtaggataaca 183
Query: 844 catccagtcatgaacttctttgaagcccaac 874
|| || ||||||||||||||||| |||||||
Sbjct: 182 cagcctgtcatgaacttctttgacgcccaac 152
>gb|AY084942.1| Arabidopsis thaliana clone 12246 mRNA, complete sequence
Length = 1111
Score = 125 bits (63), Expect = 1e-026
Identities = 309/391 (79%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 728 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 669
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 668 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 609
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 608 tagatgtgacgaacaaatggcatccgcttgataaaccactctcccaagttcagaaccgat 549
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || |||| ||| || ||||| | || || || | |
Sbjct: 548 gcccccaaccacgaagacatgaacaccccgaccaagaagatgaatgcaatggaagtcaaa 489
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||||||||||||| ||| | ||||| ||||||||||||||||||||
Sbjct: 488 aaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaagaatccatcg 429
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || | ||||| || | ||| || || | || || |||
Sbjct: 428 acaaagtgaataaaccaccatgttgtatagaaagtgactgcaataggaagtaggataaca 369
Query: 844 catccagtcatgaacttctttgaagcccaac 874
|| || ||||||||||||||||| |||||||
Sbjct: 368 cagcctgtcatgaacttctttgacgcccaac 338
>gb|AF410324.1|AF410324 Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 1069
Score = 121 bits (61), Expect = 2e-025
Identities = 307/389 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 722 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 663
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 662 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 603
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 602 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 543
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 542 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 483
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 482 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 423
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || || ||||| || ||||| || || | || || |||
Sbjct: 422 acaaagtgaataaaccaccatgttatatagaaagtaattgcaataggaagtaggataaca 363
Query: 844 catccagtcatgaacttctttgaagccca 872
|| || ||||||||||||||||| |||||
Sbjct: 362 cagcctgtcatgaacttctttgacgccca 334
>gb|AY093732.1| Arabidopsis thaliana At2g20120/T2G17.8 mRNA, complete cds
Length = 807
Score = 121 bits (61), Expect = 2e-025
Identities = 307/389 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 572 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 513
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 512 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 453
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 452 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 393
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 392 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 333
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 332 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 273
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || || ||||| || ||||| || || | || || |||
Sbjct: 272 acaaagtgaataaaccaccatgttatatagaaagtaattgcaataggaagtaggataaca 213
Query: 844 catccagtcatgaacttctttgaagccca 872
|| || ||||||||||||||||| |||||
Sbjct: 212 cagcctgtcatgaacttctttgacgccca 184
>gb|AY084984.1| Arabidopsis thaliana clone 123469 mRNA, complete sequence
Length = 1165
Score = 121 bits (61), Expect = 2e-025
Identities = 307/389 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 721 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 662
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 661 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 602
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 601 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 542
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 541 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 482
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 481 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 422
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || || ||||| || ||||| || || | || || |||
Sbjct: 421 acaaagtgaataaaccaccatgttatatagaaagtaattgcaataggaagtaggataaca 362
Query: 844 catccagtcatgaacttctttgaagccca 872
|| || ||||||||||||||||| |||||
Sbjct: 361 cagcctgtcatgaacttctttgacgccca 333
>gb|AY170845.1| Arabidopsis thaliana putative membrane protein COV (COV) mRNA,
complete cds
Length = 1127
Score = 121 bits (61), Expect = 2e-025
Identities = 307/389 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 700 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 641
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 640 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 581
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 580 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 521
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 520 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 461
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 460 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 401
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || || ||||| || ||||| || || | || || |||
Sbjct: 400 acaaagtgaataaaccaccatgttatatagaaagtaattgcaataggaagtaggataaca 341
Query: 844 catccagtcatgaacttctttgaagccca 872
|| || ||||||||||||||||| |||||
Sbjct: 340 cagcctgtcatgaacttctttgacgccca 312
>ref|NM_127570.2| Arabidopsis thaliana COV1 (CONTINUOUS VASCULAR RING) AT2G20120
(COV1) mRNA, complete cds
Length = 1170
Score = 121 bits (61), Expect = 2e-025
Identities = 307/389 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 721 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 662
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 661 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 602
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 601 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 542
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 541 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 482
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 481 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 422
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || || ||||| || ||||| || || | || || |||
Sbjct: 421 acaaagtgaataaaccaccatgttatatagaaagtaattgcaataggaagtaggataaca 362
Query: 844 catccagtcatgaacttctttgaagccca 872
|| || ||||||||||||||||| |||||
Sbjct: 361 cagcctgtcatgaacttctttgacgccca 333
>gb|AY072447.1| Arabidopsis thaliana unknown protein (At2g20130) mRNA, complete cds
Length = 1084
Score = 117 bits (59), Expect = 4e-024
Identities = 308/391 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 681 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 622
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 621 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 562
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 561 tagatgtgacgaacaaatggcatccgcttgataaaccactctcccaagttcagaaccgat 502
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 501 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 442
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||||||||||||| ||| | ||||| ||||||||||||||||||||
Sbjct: 441 aaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaagaatccatcg 382
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || | ||||| || | ||| || || | || || |||
Sbjct: 381 acaaagtgaataaaccaccatgttgtatagaaagtaactgcaataggaagtaggataaca 322
Query: 844 catccagtcatgaacttctttgaagcccaac 874
|| || ||||||||||||||||| |||||||
Sbjct: 321 cagcctgtcatgaacttctttgacgcccaac 291
>ref|NM_127571.2| Arabidopsis thaliana LCV1 AT2G20130 (LCV1) mRNA, complete cds
Length = 1203
Score = 117 bits (59), Expect = 4e-024
Identities = 308/391 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 728 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 669
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 668 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 609
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 608 tagatgtgacgaacaaatggcatccgcttgataaaccactctcccaagttcagaaccgat 549
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 548 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 489
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||||||||||||| ||| | ||||| ||||||||||||||||||||
Sbjct: 488 aaaccgaaaccaaatatgttgattccaagtagtgcatatattggagagaagaatccatcg 429
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || | ||||| || | ||| || || | || || |||
Sbjct: 428 acaaagtgaataaaccaccatgttgtatagaaagtaactgcaataggaagtaggataaca 369
Query: 844 catccagtcatgaacttctttgaagcccaac 874
|| || ||||||||||||||||| |||||||
Sbjct: 368 cagcctgtcatgaacttctttgacgcccaac 338
>emb|BX820138.1|CNS0A9EX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS78ZH10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1014
Score = 113 bits (57), Expect = 6e-023
Identities = 306/389 (78%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 638 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 579
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 578 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 519
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 518 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 459
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 458 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 399
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 398 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 339
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaagagaattaca 843
||||| ||||| |||||||| || || ||||| || || || || || | || || |||
Sbjct: 338 acaaagtgaataaaccaccatgttatatagaaagtaatcgcaataggaagtaggataaca 279
Query: 844 catccagtcatgaacttctttgaagccca 872
|| || ||||||||||||||||| |||||
Sbjct: 278 cagcctgtcatgaacttctttgacgccca 250
>gb|DQ069818.1| Arabidopsis thaliana At2g18460 mRNA, partial sequence
Length = 489
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 715 gatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaag 774
||||| ||||||||||||||||| || |||||||| || |||| |||||| || ||||||
Sbjct: 326 gatgttacaaagccaagaccgaacatattgattccgagatgagtatagatcggggagaag 267
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaag 834
||||||||||| ||||| || |||||||| |||| |||||| || | || || || |
Sbjct: 266 aatccatcaacgaaatgtataaaccaccacgtgaagtagaatgtgacagcgattggtagc 207
Query: 835 agaattacacatccagtcatgaactt 860
||||| |||||||| |||||||||||
Sbjct: 206 agaatgacacatccggtcatgaactt 181
>ref|NM_127402.2| Arabidopsis thaliana LCV3 AT2G18460 (LCV3) transcript variant
AT2G18460.1 mRNA, complete cds
Length = 851
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 715 gatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaag 774
||||| ||||||||||||||||| || |||||||| || |||| |||||| || ||||||
Sbjct: 311 gatgttacaaagccaagaccgaacatattgattccgagatgagtatagatcggggagaag 252
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaag 834
||||||||||| ||||| || |||||||| |||| |||||| || | || || || |
Sbjct: 251 aatccatcaacgaaatgtataaaccaccacgtgaagtagaatgtgacagcgattggtagc 192
Query: 835 agaattacacatccagtcatgaactt 860
||||| |||||||| |||||||||||
Sbjct: 191 agaatgacacatccggtcatgaactt 166
>ref|NM_201755.1| Arabidopsis thaliana LCV3 AT2G18460 (LCV3) transcript variant
AT2G18460.2 mRNA, complete cds
Length = 807
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 715 gatgtgacaaagccaagaccgaatatgttgattcccagttgagcatagattggagagaag 774
||||| ||||||||||||||||| || |||||||| || |||| |||||| || ||||||
Sbjct: 305 gatgttacaaagccaagaccgaacatattgattccgagatgagtatagatcggggagaag 246
Query: 775 aatccatcaacaaaatgaatgaaccaccaggtgatgtagaacgttattgctatggggaag 834
||||||||||| ||||| || |||||||| |||| |||||| || | || || || |
Sbjct: 245 aatccatcaacgaaatgtataaaccaccacgtgaagtagaatgtgacagcgattggtagc 186
Query: 835 agaattacacatccagtcatgaactt 860
||||| |||||||| |||||||||||
Sbjct: 185 agaatgacacatccggtcatgaactt 160
>gb|AV785472.1|AV785472 AV785472 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-K21 3',
mRNA sequence
Length = 702
Score = 97.6 bits (49), Expect = 3e-018
Identities = 268/341 (78%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 348 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 407
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 408 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 467
Query: 604 tagatatgacgaacaagaggcatgcgcttaataatccactcgccaaggctaaggacagat 663
||||| |||||||||| ||||| ||||| |||| |||||| || | | | || || |||
Sbjct: 468 tagatgtgacgaacaaacggcatccgcttgataaaccactctcccaagttcagaaccgat 527
Query: 664 gccccaagccaagatgacataaagactccgatcaaaaatatgaaagtaacagatgtgaca 723
||||| | ||| || ||||| || || || | ||| || ||||| | || || || | |
Sbjct: 528 gcccccaaccacgaagacatgaacaccccaaccaagaagatgaatgcaatggaagtcaaa 587
Query: 724 aagccaagaccgaatatgttgattcccagttgagcatagattggagagaagaatccatca 783
|| || | ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 588 aaaccgaaaccaaatacgttgattccaagttgtgcatatattggagagaagaatccatcg 647
Query: 784 acaaaatgaatgaaccaccaggtgatgtagaacgttattgc 824
|| || ||||| |||||||| || || ||||| || |||||
Sbjct: 648 accaagtgaataaaccaccatgttatatagaaagtaattgc 688
>gb|AV824257.1|AV824257 AV824257 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-K21 5',
mRNA sequence
Length = 671
Score = 97.6 bits (49), Expect = 3e-018
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 471 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 412
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatg 855
|||||||| || || ||||| || ||||| || || | || || ||||| || ||||||
Sbjct: 411 aaccaccatgttatatagaaagtaattgcaataggaagtaggataacacagcctgtcatg 352
Query: 856 aacttctttgaagccca 872
||||||||||| |||||
Sbjct: 351 aacttctttgacgccca 335
>gb|AV550281.1|AV550281 AV550281 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ110c07R 5', mRNA sequence
Length = 510
Score = 97.6 bits (49), Expect = 3e-018
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 438 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 379
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatg 855
|||||||| || || ||||| || ||||| || || | || || ||||| || ||||||
Sbjct: 378 aaccaccatgttatatagaaagtaattgcaataggaagtaggataacacagcctgtcatg 319
Query: 856 aacttctttgaagccca 872
||||||||||| |||||
Sbjct: 318 aacttctttgacgccca 302
>gb|AV550571.1|AV550571 AV550571 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ114d02R 5', mRNA sequence
Length = 500
Score = 97.6 bits (49), Expect = 3e-018
Identities = 115/137 (83%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 317 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 258
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatg 855
|||||||| || || ||||| || ||||| || || | || || ||||| || ||||||
Sbjct: 257 aaccaccatgttatatagaaagtaattgcaataggaagtaggataacacagcctgtcatg 198
Query: 856 aacttctttgaagccca 872
||||||||||| |||||
Sbjct: 197 aacttctttgacgccca 181
>gb|AV831711.1|AV831711 AV831711 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-94-N13 5',
mRNA sequence
Length = 578
Score = 85.7 bits (43), Expect = 1e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||||||||||||| ||| | ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 430 aatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtgaata 371
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatg 855
|||||||| || | ||||| || | ||| || || | || || ||||| || ||||||
Sbjct: 370 aaccaccatgttgtatagaaagtaactgcaataggaagtaggataacacagcctgtcatg 311
Query: 856 aacttctttgaagcccaac 874
||||||||||| |||||||
Sbjct: 310 aacttctttgacgcccaac 292
>emb|BX002464.1| Arabidopsis thaliana T-DNA flanking sequence GK-364E07-016996,
genomic survey sequence
Length = 687
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 180 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 239
Query: 796 aaccaccaggtgatgtagaacgttattgc 824
|||||||| || || ||||| || |||||
Sbjct: 240 aaccaccatgttatatagaaagtaattgc 268
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete
sequence
Length = 97814
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 30260 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 30201
Query: 796 aaccaccaggtgatgtagaacgttattgc 824
|||||||| || || ||||| || |||||
Sbjct: 30200 aaccaccatgttatatagaaagtaattgc 30172
Score = 79.8 bits (40), Expect = 8e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||||||||||||| ||| | ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 27211 aatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtgaata 27152
Query: 796 aaccacca 803
||||||||
Sbjct: 27151 aaccacca 27144
Score = 50.1 bits (25), Expect = 7e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 27634 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 27575
Query: 544 ttgaa 548
|||||
Sbjct: 27574 ttgaa 27570
Score = 42.1 bits (21), Expect = 0.17
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 30689 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 30630
Query: 544 ttgaa 548
|||||
Sbjct: 30629 ttgaa 30625
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 850 gtcatgaacttctttgaagcccaac 874
||||||||||||||||| |||||||
Sbjct: 27021 gtcatgaacttctttgacgcccaac 26997
>emb|BX820903.1|CNS0A9OE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZG10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1445
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 536 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 477
Query: 796 aaccaccaggtgatgtagaacgttattgc 824
|||||||| || || ||||| || |||||
Sbjct: 476 aaccaccatgttatatagaaagtgattgc 448
Score = 42.1 bits (21), Expect = 0.17
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 965 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 906
Query: 544 ttgaa 548
|||||
Sbjct: 905 ttgaa 901
>emb|BX820909.1|CNS0A9PK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH80ZE08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1333
Score = 81.8 bits (41), Expect = 2e-013
Identities = 113/137 (82%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| | ||| |||||||||||||||||||| ||||| |||||
Sbjct: 451 aatacgttgattccaagttgtgaatatattggagagaagaatccatcgacaaagtgaata 392
Query: 796 aaccaccaggtgatgtagaacgttattgctatggggaagagaattacacatccagtcatg 855
|||||||| || || ||||| || ||||| || || | || || | ||| || ||||||
Sbjct: 391 aaccaccatgttatatagaaagtaattgcaataggaagtaggataaaacagcctgtcatg 332
Query: 856 aacttctttgaagccca 872
||||||||||| |||||
Sbjct: 331 aacttctttgacgccca 315
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 81.8 bits (41), Expect = 2e-013
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 8695553 aatacgttgattccaagttgtgcatatattggagagaagaatccatcgacaaagtgaata 8695612
Query: 796 aaccaccaggtgatgtagaacgttattgc 824
|||||||| || || ||||| || |||||
Sbjct: 8695613 aaccaccatgttatatagaaagtaattgc 8695641
Score = 79.8 bits (40), Expect = 8e-013
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||||||||||||| ||| | ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 8698602 aatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtgaata 8698661
Query: 796 aaccacca 803
||||||||
Sbjct: 8698662 aaccacca 8698669
Score = 71.9 bits (36), Expect = 2e-010
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 732 accgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatg 791
|||||| || |||||||| || |||| |||||| || ||||||||||||||||| |||||
Sbjct: 8009037 accgaacatattgattccgagatgagtatagatcggggagaagaatccatcaacgaaatg 8008978
Query: 792 aatgaaccaccaggtgatgtagaa 815
|| |||||||| |||| ||||||
Sbjct: 8008977 tataaaccaccacgtgaagtagaa 8008954
Score = 50.1 bits (25), Expect = 7e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 8698179 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 8698238
Query: 544 ttgaa 548
|||||
Sbjct: 8698239 ttgaa 8698243
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 850 gtcatgaacttctttgaagcccaac 874
||||||||||||||||| |||||||
Sbjct: 8698792 gtcatgaacttctttgacgcccaac 8698816
Score = 42.1 bits (21), Expect = 0.17
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 8695124 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 8695183
Query: 544 ttgaa 548
|||||
Sbjct: 8695184 ttgaa 8695188
>emb|AL091316.1|CNS00UQE Arabidopsis thaliana genome survey sequence SP6 end of BAC T7K15 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 330
Score = 79.8 bits (40), Expect = 8e-013
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatgaatg 795
|||||||||||||| ||| | ||||| |||||||||||||||||||| ||||| |||||
Sbjct: 226 aatatgttgattccaagtagtgcatatattggagagaagaatccatcgacaaagtgaata 167
Query: 796 aaccacca 803
||||||||
Sbjct: 166 aaccacca 159
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 850 gtcatgaacttctttgaagcccaac 874
||||||||||||||||| |||||||
Sbjct: 36 gtcatgaacttctttgacgcccaac 12
>gb|BP816410.1|BP816410 BP816410 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-41-M21 5',
mRNA sequence
Length = 400
Score = 75.8 bits (38), Expect = 1e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 747 tcccagttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccaccaggt 806
||||| ||| ||||| |||||||||||||||||||| || || ||||| |||||||| ||
Sbjct: 400 tcccacttgtgcatacattggagagaagaatccatcgaccaagtgaataaaccaccatgt 341
Query: 807 gatgtagaacgttattgctatggggaagagaattacacatccagtcatgaacttctttga 866
|| ||||| || ||||| || || | || || ||||| || |||||||||||||||||
Sbjct: 340 tatatagaaagtaattgcaataggaagtaggataacacagcctgtcatgaacttctttga 281
Query: 867 agccca 872
|||||
Sbjct: 280 cgccca 275
>gb|AV559028.1|AV559028 AV559028 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ109h08F 3', mRNA sequence
Length = 583
Score = 73.8 bits (37), Expect = 5e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 432 gatgtaatgaagccaaatgcatattcacctacacggggatgcctgatgattgcaacttcc 491
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 492 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 551
Query: 604 tagatatgacgaacaagaggcatgcgctt 632
||||| |||||||||| ||||| |||||
Sbjct: 552 tagatgtgacgaacaaatggcatccgctt 580
>gb|AC006439.4| Arabidopsis thaliana chromosome 2 clone T30D6 map mi39, complete
sequence
Length = 92861
Score = 71.9 bits (36), Expect = 2e-010
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 732 accgaatatgttgattcccagttgagcatagattggagagaagaatccatcaacaaaatg 791
|||||| || |||||||| || |||| |||||| || ||||||||||||||||| |||||
Sbjct: 13510 accgaacatattgattccgagatgagtatagatcggggagaagaatccatcaacgaaatg 13569
Query: 792 aatgaaccaccaggtgatgtagaa 815
|| |||||||| |||| ||||||
Sbjct: 13570 tataaaccaccacgtgaagtagaa 13593
>gb|AV531552.1|AV531552 AV531552 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB025g07F 3', mRNA sequence
Length = 602
Score = 65.9 bits (33), Expect = 1e-008
Identities = 120/149 (80%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 450 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 509
Query: 544 ttgaacgcctgtttgttctgatctggtgatattgcagcactaatttgcttcgatgcattg 603
||||| || ||| | || ||||| || ||||| |||| || |||||||| || || |||
Sbjct: 510 ttgaaagcttgtgtattttgatcaggcgatatggcagtgctgatttgcttggaggcgttg 569
Query: 604 tagatatgacgaacaagaggcatgcgctt 632
||||| |||||||||| ||||| |||||
Sbjct: 570 tagatgtgacgaacaaacggcatccgctt 598
>gb|BP812408.1|BP812408 BP812408 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-E22 5',
mRNA sequence
Length = 399
Score = 63.9 bits (32), Expect = 5e-008
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 752 gttgagcatagattggagagaagaatccatcaacaaaatgaatgaaccaccaggtgatgt 811
|||| ||||| |||||||||||||||||||| || || ||||| |||||||| || || |
Sbjct: 395 gttgtgcatatattggagagaagaatccatcgaccaagtgaataaaccaccatgttatat 336
Query: 812 agaacgttattgctatggggaagagaattacacatccagtcatgaacttctttgaagccc 871
|||| || ||||| || || | || || || || || ||||||||||||||||| ||||
Sbjct: 335 agaaagtaattgccataggaagtaggataacccagcctgtcatgaacttctttgacgccc 276
>gb|BP796410.1|BP796410 BP796410 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-05-C24 5',
mRNA sequence
Length = 504
Score = 54.0 bits (27), Expect = 4e-005
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 736 aatatgttgattcccag-ttgagcatagattggagagaagaatccatcaacaaaatgaat 794
|||| ||||||||| || ||| ||||| |||| ||||||||||||||| ||||| |||||
Sbjct: 468 aatacgttgattccaaggttgngcatatattgnagagaagaatccatcgacaaagtgaat 409
Query: 795 gaacc 799
||||
Sbjct: 408 aaacc 404
>gb|N37582.1|N37582 18809 Lambda-PRL2 Arabidopsis thaliana cDNA clone 206L8T7, mRNA
sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.011
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 736 aatatgttgattccca-gttgagcatagattggagagaagaatccatcaacaaa 788
|||||||||||||||| | | ||||| |||||||||||||| ||||| |||||
Sbjct: 463 aatatgttgattcccaagaagtgcatatattggagagaagaanccatcgacaaa 410
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 850 gtcatgaacttctttgaagcccaac 874
||||||||||||||||| |||||||
Sbjct: 342 gtcatgaacttctttgacgcccaac 318
>gb|BP797687.1|BP797687 BP797687 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-04-F12 5',
mRNA sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.042
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 841 acacatccagtcatgaacttctttgaagcccaac 874
||||| || ||||||||||||||||| |||||||
Sbjct: 344 acacagcctgtcatgaacttctttgacgcccaac 311
>gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-phosphosulfate-kinase (akn2) mRNA,
complete cds
Length = 1311
Score = 44.1 bits (22), Expect = 0.042
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 903 gtcgacgcggccgcgaattcca 924
||||||||||||||||||||||
Sbjct: 1235 gtcgacgcggccgcgaattcca 1256
>gb|AV544391.1|AV544391 AV544391 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ42a07F 3', mRNA sequence
Length = 447
Score = 42.1 bits (21), Expect = 0.17
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 378 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 437
Query: 544 ttgaa 548
|||||
Sbjct: 438 ttgaa 442
>gb|AV559198.1|AV559198 AV559198 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112h04F 3', mRNA sequence
Length = 486
Score = 42.1 bits (21), Expect = 0.17
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 484 gatgtgatgaaaccaaacgcatattctccaacacgaggatgccttatgatgaccacttcc 543
||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 418 gatgtaatgaagccaaatgcgtattcacctacacggggatgcctgatgattgcaacttcc 477
Query: 544 ttgaa 548
|||||
Sbjct: 478 ttgaa 482
>gb|BP859667.1|BP859667 BP859667 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-41-H04 5',
mRNA sequence
Length = 393
Score = 42.1 bits (21), Expect = 0.17
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 850 gtcatgaacttctttgaagcccaac 874
||||||||||||||||| |||||||
Sbjct: 350 gtcatgaacttctttgacgcccaac 326
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 479,944
Number of Sequences: 1013581
Number of extensions: 479944
Number of successful extensions: 35847
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35491
Number of HSP's gapped (non-prelim): 343
length of query: 924
length of database: 908,940,872
effective HSP length: 20
effective length of query: 904
effective length of database: 888,669,252
effective search space: 803357003808
effective search space used: 803357003808
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)