BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3062418.2.1
         (851 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AX544439.1|  Sequence 92 from Patent WO02066660                48   0.003
ref|NM_112689.2|  Arabidopsis thaliana hydrolase, hydrolyzin...    48   0.003
dbj|AB020749.1|  Arabidopsis thaliana genomic DNA, chromosom...    44   0.039
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    44   0.039
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    44   0.039

>emb|AX544439.1| Sequence 92 from Patent WO02066660
          Length = 1488

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 26  gctcaaagagcaagggatttccatgttggttggttt 61
           |||||||||||||| || ||||||||||| ||||||
Sbjct: 823 gctcaaagagcaagagacttccatgttggatggttt 858



>ref|NM_112689.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
           AT3G18070 mRNA, complete cds
          Length = 1506

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 26  gctcaaagagcaagggatttccatgttggttggttt 61
           |||||||||||||| || ||||||||||| ||||||
Sbjct: 841 gctcaaagagcaagagacttccatgttggatggttt 876



>dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8
          Length = 76816

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 26    gctcaaagagcaagggatttccatgttggttggt 59
             |||||||||||||| || ||||||||||| ||||
Sbjct: 17693 gctcaaagagcaagagacttccatgttggatggt 17726



>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 26      gctcaaagagcaagggatttccatgttggttggt 59
               |||||||||||||| || ||||||||||| ||||
Sbjct: 6162998 gctcaaagagcaagagacttccatgttggatggt 6163031



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 44.1 bits (22), Expect = 0.039
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 26      gctcaaagagcaagggatttccatgttggttggt 59
               |||||||||||||| || ||||||||||| ||||
Sbjct: 6188701 gctcaaagagcaagagacttccatgttggatggt 6188734



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 343,992
Number of Sequences: 1013581
Number of extensions: 343992
Number of successful extensions: 23389
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23116
Number of HSP's gapped (non-prelim): 273
length of query: 851
length of database: 908,940,872
effective HSP length: 20
effective length of query: 831
effective length of database: 888,669,252
effective search space: 738484148412
effective search space used: 738484148412
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)