BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3054736.2.1
(725 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L... 46 0.008
emb|BX820892.1|CNS0A83O Arabidopsis thaliana Full-length cD... 46 0.008
emb|BX818880.1|CNS0A9Q5 Arabidopsis thaliana Full-length cD... 46 0.008
gb|BT015330.1| Arabidopsis thaliana At2g26100 gene, complet... 46 0.008
gb|BT015706.1| Arabidopsis thaliana At2g26100 gene, complet... 46 0.008
ref|NM_128168.3| Arabidopsis thaliana transferase, transfer... 46 0.008
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.008
>gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L18 map B68, complete
sequence
Length = 87080
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 27971 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 28030
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 28031 gaagacaaccg 28041
>emb|BX820892.1|CNS0A83O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH79ZF09 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1502
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 965 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 1024
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 1025 gaagacaaccg 1035
>emb|BX818880.1|CNS0A9Q5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB22ZG10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1439
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 938 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 997
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 998 gaagacaaccg 1008
>gb|BT015330.1| Arabidopsis thaliana At2g26100 gene, complete cds
Length = 1246
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 917 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 976
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 977 gaagacaaccg 987
>gb|BT015706.1| Arabidopsis thaliana At2g26100 gene, complete cds
Length = 1116
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 886 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 945
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 946 gaagacaaccg 956
>ref|NM_128168.3| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT2G26100 mRNA,
complete cds
Length = 1498
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 965 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 1024
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 1025 gaagacaaccg 1035
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 150 atgtttgattatgaagatgttacaatcggcgcatggatgcttgctatgaatgtaaagcat 209
|||||| || |||||||||| || ||||| | ||||||||||| ||| ||||| | ||
Sbjct: 11123602 atgtttaataatgaagatgtaactatcggatcttggatgcttgcaatggatgtacatcac 11123543
Query: 210 gaagacaaccg 220
|||||||||||
Sbjct: 11123542 gaagacaaccg 11123532
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 374,535
Number of Sequences: 1013581
Number of extensions: 374535
Number of successful extensions: 29091
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28904
Number of HSP's gapped (non-prelim): 187
length of query: 725
length of database: 908,940,872
effective HSP length: 20
effective length of query: 705
effective length of database: 888,669,252
effective search space: 626511822660
effective search space used: 626511822660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)