BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3042304.2.1
(805 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV553003.1|AV553003 AV553003 Arabidopsis thaliana roots ... 145 1e-032
emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-gluc... 145 1e-032
gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRN... 145 1e-032
gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRN... 145 1e-032
gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRN... 145 1e-032
gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid dec... 145 1e-032
emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cD... 145 1e-032
ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ... 145 1e-032
gb|CB185735.2|CB185735 EST00661 Arabidopsis avirulent Pseud... 137 3e-030
gb|AV541133.1|AV541133 AV541133 Arabidopsis thaliana roots ... 129 8e-028
gb|AV550208.1|AV550208 AV550208 Arabidopsis thaliana roots ... 129 8e-028
gb|AV782529.1|AV782529 AV782529 RAFL4 Arabidopsis thaliana ... 125 1e-026
gb|AV521021.1|AV521021 AV521021 Arabidopsis thaliana aboveg... 125 1e-026
gb|AV533768.1|AV533768 AV533768 Arabidopsis thaliana flower... 125 1e-026
gb|AV537418.1|AV537418 AV537418 Arabidopsis thaliana roots ... 125 1e-026
emb|AX505495.1| Sequence 190 from Patent WO0216655 125 1e-026
gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complet... 125 1e-026
ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNT... 125 1e-026
gb|CB260122.1|CB260122 94-E9601-013-003-K24-t7r MPIZ-ADIS-0... 101 2e-019
gb|AV538824.1|AV538824 AV538824 Arabidopsis thaliana roots ... 101 2e-019
gb|AV541838.1|AV541838 AV541838 Arabidopsis thaliana roots ... 94 4e-017
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 92 2e-016
emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome ... 92 2e-016
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 92 2e-016
gb|CB255558.1|CB255558 38-E010697-019-002-K10-T7R MPIZ-ADIS... 80 7e-013
gb|N37324.1|N37324 18551 Lambda-PRL2 Arabidopsis thaliana c... 78 3e-012
gb|AV549274.1|AV549274 AV549274 Arabidopsis thaliana roots ... 68 3e-009
gb|BP582514.1|BP582514 BP582514 RAFL14 Arabidopsis thaliana... 66 1e-008
gb|BP585895.1|BP585895 BP585895 RAFL15 Arabidopsis thaliana... 66 1e-008
gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B... 66 1e-008
gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A... 66 1e-008
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 66 1e-008
gb|AQ967293.1|AQ967293 LERIQ83TF LERG Arabidopsis thaliana ... 64 4e-008
gb|AQ969939.1|AQ969939 LERJR50TF LERG Arabidopsis thaliana ... 64 4e-008
gb|AQ969940.1|AQ969940 LERJR50TR LERG Arabidopsis thaliana ... 64 4e-008
gb|BP571979.1|BP571979 BP571979 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|BP564295.1|BP564295 BP564295 RAFL14 Arabidopsis thaliana... 54 4e-005
gb|AI100480.1|AI100480 34855 Lambda-PRL2 Arabidopsis thalia... 52 2e-004
gb|AV567402.1|AV567402 AV567402 Arabidopsis thaliana green ... 52 2e-004
gb|BP575347.1|BP575347 BP575347 RAFL14 Arabidopsis thaliana... 52 2e-004
gb|AV788561.1|AV788561 AV788561 RAFL6 Arabidopsis thaliana ... 50 6e-004
gb|AV814478.1|AV814478 AV814478 RAFL9 Arabidopsis thaliana ... 50 6e-004
gb|BP565000.1|BP565000 BP565000 RAFL14 Arabidopsis thaliana... 48 0.002
gb|BP592035.1|BP592035 BP592035 RAFL15 Arabidopsis thaliana... 48 0.002
gb|BP593145.1|BP593145 BP593145 RAFL15 Arabidopsis thaliana... 46 0.009
gb|AV782870.1|AV782870 AV782870 RAFL5 Arabidopsis thaliana ... 44 0.037
gb|BX839560.1|BX839560 BX839560 Arabidopsis thaliana Adult ... 44 0.037
gb|AV540797.1|AV540797 AV540797 Arabidopsis thaliana roots ... 44 0.037
gb|CK121683.1|CK121683 202b24.p1 AtM1 Arabidopsis thaliana ... 44 0.037
gb|AF375442.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRN... 44 0.037
gb|AY093958.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRN... 44 0.037
gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4... 44 0.037
gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4... 44 0.037
gb|AF387789.1| Arabidopsis thaliana UDP-glucuronic acid dec... 44 0.037
gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, compl... 44 0.037
gb|AY088443.1| Arabidopsis thaliana clone 6701 mRNA, comple... 44 0.037
emb|BX832416.1|CNS0A12Y Arabidopsis thaliana Full-length cD... 44 0.037
emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cD... 44 0.037
dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.037
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.037
emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome... 44 0.037
ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G4... 44 0.037
ref|NM_125319.2| Arabidopsis thaliana UXS3 (UDP-GLUCURONIC ... 44 0.037
ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT... 44 0.037
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.037
gb|AY065075.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydr... 42 0.15
gb|AF387787.1| Arabidopsis thaliana UDP-glucuronic acid dec... 42 0.15
gb|BT003355.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydr... 42 0.15
emb|BX822635.1|CNS0A7MG Arabidopsis thaliana Full-length cD... 42 0.15
emb|BX823176.1|CNS0A7M4 Arabidopsis thaliana Full-length cD... 42 0.15
emb|BX823214.1|CNS0A7KG Arabidopsis thaliana Full-length cD... 42 0.15
emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome ... 42 0.15
ref|NM_180363.1| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ... 42 0.15
ref|NM_115212.2| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ... 42 0.15
>gb|AV553003.1|AV553003 AV553003 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ51d02R 5', mRNA sequence
Length = 542
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 228 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 287
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 288 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 347
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 348 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 407
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 408 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 457
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases
Length = 1660
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 1001 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 1060
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 1061 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 1120
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 1121 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggtgaacat 1180
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 1181 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 1230
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
Length = 1701
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 1015 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 1074
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 1075 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 1134
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 1135 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 1194
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 1195 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 1244
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
Length = 1663
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 1015 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 1074
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 1075 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 1134
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 1135 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggtgaacat 1194
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 1195 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 1244
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds
Length = 1338
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 862 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 921
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 922 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 981
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 982 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 1041
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 1042 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 1091
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA,
complete cds
Length = 1338
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 862 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 921
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 922 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 981
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 982 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggtgaacat 1041
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 1042 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 1091
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 233 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 292
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 293 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 352
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 353 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 412
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 413 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 462
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2);
catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2)
mRNA, complete cds
Length = 1338
Score = 145 bits (73), Expect = 1e-032
Identities = 190/230 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 862 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 921
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 922 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 981
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 982 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 1041
Query: 240 gtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
|| || ||||| ||||| || ||||| || || ||||| ||||| |||||
Sbjct: 1042 gtcggcccattcaacctcggtaaccctggtgaattcacgatgctcgagct 1091
>gb|CB185735.2|CB185735 EST00661 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM5-E9 similar
to dTDP-glucose 4-6-dehydratase homolog, mRNA sequence
Length = 672
Score = 137 bits (69), Expect = 3e-030
Identities = 171/206 (83%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 57 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 116
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 117 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 176
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| ||||||||||| || |||
Sbjct: 177 agtttccaatttgtttctgatctggttgaaggtttgatgagactgatggaaggagaacat 236
Query: 240 gtaggaccatttaacctgggcaaccc 265
|| || ||||| ||||| || |||||
Sbjct: 237 gtcggcccattcaacctcggtaaccc 262
>gb|AV541133.1|AV541133 AV541133 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ16f09F 3', mRNA sequence
Length = 594
Score = 129 bits (65), Expect = 8e-028
Identities = 161/194 (82%)
Strand = Plus / Minus
Query: 96 gatggccgtgttgtcagttaantcgttgctcaggcactgangaangagccattgacggtt 155
||||| |||||||| ||| | ||||||| |||||||| | ||| ||||||||||| |||
Sbjct: 582 gatgggcgtgttgttagtaacttcgttgcacaggcactaaggaaagagccattgactgtt 523
Query: 156 tatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctg 215
|| ||||||| ||||| || ||||||||||||| ||||||||||||||| || ||| ||
Sbjct: 522 tacggtgatgagaagcagacaaggagtttccaatttgtttctgatctggttgaaggtttg 463
Query: 216 atgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttc 275
|||| ||||||||||| || ||||| || ||||| ||||| || ||||| || || |||
Sbjct: 462 atgagactgatggaaggagaacatgtcggcccattcaacctcggtaaccctggtgaattc 403
Query: 276 accatgctggagct 289
|| ||||| |||||
Sbjct: 402 acgatgctcgagct 389
>gb|AV550208.1|AV550208 AV550208 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109f12R 5', mRNA sequence
Length = 449
Score = 129 bits (65), Expect = 8e-028
Identities = 170/206 (82%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgtcagttaantc 119
||||||||||| ||||| || | ||||| || || ||||| |||||||| ||| | ||
Sbjct: 228 atcttcaacacctatggtccaagaatgtgtatagatgatgggcgtgttgttagtaacttc 287
Query: 120 gttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaaccagg 179
||||| |||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||
Sbjct: 288 gttgcacaggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaagg 347
Query: 180 agtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagcat 239
|||||||||| ||||||||||||||| || ||| |||||| | ||||||||| || |||
Sbjct: 348 agtttccaatttgtttctgatctggttgaaggtttgatgagacggatggaaggagaacat 407
Query: 240 gtaggaccatttaacctgggcaaccc 265
|| || ||||| ||||| || |||||
Sbjct: 408 gtcggcccattcaacctcggtaaccc 433
>gb|AV782529.1|AV782529 AV782529 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-18-J05 3',
mRNA sequence
Length = 689
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Minus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 544 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 485
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 484 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 425
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 424 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 365
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 364 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 305
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 304 acccacacaag 294
>gb|AV521021.1|AV521021 AV521021 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ41d10F 3', mRNA
sequence
Length = 635
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Minus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 490 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 431
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 430 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 371
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 370 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 311
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 310 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 251
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 250 acccacacaag 240
>gb|AV533768.1|AV533768 AV533768 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB067e08F 3', mRNA sequence
Length = 549
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Minus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 547 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 488
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 487 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 428
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 427 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 368
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 367 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 308
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 307 acccacacaag 297
>gb|AV537418.1|AV537418 AV537418 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ05f08F 3', mRNA sequence
Length = 636
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Minus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 491 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 432
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 431 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 372
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 371 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 312
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 311 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 252
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 251 acccacacaag 241
>emb|AX505495.1| Sequence 190 from Patent WO0216655
Length = 1332
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 926 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 985
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 986 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 1045
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 1046 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 1105
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 1106 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 1165
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 1166 acccacacaag 1176
>gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complete cds
Length = 1480
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 938 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 997
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 998 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 1057
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 1058 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 1117
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 1118 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 1177
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 1178 acccacacaag 1188
>ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNTHASE 4); catalytic
AT2G47650 (UXS4) mRNA, complete cds
Length = 1529
Score = 125 bits (63), Expect = 1e-026
Identities = 203/251 (80%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 1019 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 1078
Query: 178 ggagtttccaatatgtttctgatctggtcgagggtctgatgaagctgatggaaggcgagc 237
|||||||||| | ||| ||||||||||| || |||||||||| | ||||||| || || |
Sbjct: 1079 ggagtttccagtttgtctctgatctggtggaaggtctgatgaggttgatggagggagaac 1138
Query: 238 atgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaang 297
|||| || ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 1139 atgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaagg 1198
Query: 298 ttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacg 357
| || || || || || ||||| |||||| ||| |||||| | | ||||| | ||||
Sbjct: 1199 tggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacg 1258
Query: 358 acccacacaag 368
|||||||||||
Sbjct: 1259 acccacacaag 1269
>gb|CB260122.1|CB260122 94-E9601-013-003-K24-t7r MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K243Q 5-PRIME, mRNA sequence
Length = 499
Score = 101 bits (51), Expect = 2e-019
Identities = 169/209 (80%)
Strand = Plus / Plus
Query: 160 gtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatga 219
||||||| ||||| || ||||||||||| | ||| ||||||||||| || ||||||||||
Sbjct: 1 gtgatggtaagcagactaggagtttccagtttgtctctgatctggtggaaggtctgatga 60
Query: 220 agctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcacca 279
| ||||||| || || ||||| || ||||||||||| || |||||||| || |||||||
Sbjct: 61 ggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggtgaattcacca 120
Query: 280 tgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacggatcgagttcc 339
|||| ||||| || || || || || || || || ||||| |||||| ||| ||||||
Sbjct: 121 tgctcgagctcgctaaggtggttcaagagacaattgacccgaacgcaaagatagagttca 180
Query: 340 gtcagaacacccangacgacccacacaag 368
| | ||||| | |||||||||||||||
Sbjct: 181 gaccaaacacagaggacgacccacacaag 209
>gb|AV538824.1|AV538824 AV538824 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121h03F 3', mRNA sequence
Length = 596
Score = 101 bits (51), Expect = 2e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 147 ttgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtc 206
||||| ||||| |||||||| ||||| || ||||||||||||| |||||||||||||||
Sbjct: 596 ttgactgtttacggtgatgggaagcagacaaggagtttccaatttgtttctgatctggtt 537
Query: 207 gagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaacccc 266
|| ||| |||||| ||||||||||| || ||||| || ||||| ||||| || |||||
Sbjct: 536 gaaggtttgatgagactgatggaaggagaacatgtcggcccattcaacctcggtaaccct 477
Query: 267 ggcgagttcaccatgctggagct 289
|| || ||||| ||||| |||||
Sbjct: 476 ggtgaattcacgatgctcgagct 454
>gb|AV541838.1|AV541838 AV541838 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ172b02F 3', mRNA sequence
Length = 570
Score = 93.7 bits (47), Expect = 4e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 159 ggtgatggaaagcaaaccaggagtttccaatatgtttctgatctggtcgagggtctgatg 218
|||||||| ||||| || ||||||||||||| ||||||||||||||| || ||| |||||
Sbjct: 570 ggtgatgggaagcagacaaggagtttccaatttgtttctgatctggttgaaggtttgatg 511
Query: 219 aagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcacc 278
| ||||||||||| || ||||| || ||||| ||||| || ||||| || || |||||
Sbjct: 510 agactgatggaaggagaacatgtcggcccattcaacctcggtaaccctggtgaattcacg 451
Query: 279 atgctggagct 289
||||| |||||
Sbjct: 450 atgctcgagct 440
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 91.7 bits (46), Expect = 2e-016
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 126 caggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttc 185
|||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 23177480 caggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaaggagtttc 23177539
Query: 186 caatatgtttctgatctggt 205
|||| |||||||||||||||
Sbjct: 23177540 caatttgtttctgatctggt 23177559
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||| ||||| || |||||| ||| || ||||||||||||||
Sbjct: 17054011 atcttcaacacttatggtccacgcatgaacatcgatgatggccgtgttgt 17053962
Score = 42.1 bits (21), Expect = 0.15
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 57 cgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||| |||||||||||||| || | |||||| |||| ||||| ||||||||
Sbjct: 19806568 cgtattttcaacacatatgggcccagaatgtgccttgatgatgggcgtgttgt 19806620
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9
Length = 110257
Score = 91.7 bits (46), Expect = 2e-016
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 126 caggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttc 185
|||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 87223 caggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaaggagtttc 87282
Query: 186 caatatgtttctgatctggt 205
|||| |||||||||||||||
Sbjct: 87283 caatttgtttctgatctggt 87302
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 91.7 bits (46), Expect = 2e-016
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 126 caggcactgangaangagccattgacggtttatggtgatggaaagcaaaccaggagtttc 185
|||||||| | ||| ||||||||||| ||||| |||||||| ||||| || |||||||||
Sbjct: 23245224 caggcactaaggaaagagccattgactgtttacggtgatgggaagcagacaaggagtttc 23245283
Query: 186 caatatgtttctgatctggt 205
|||| |||||||||||||||
Sbjct: 23245284 caatttgtttctgatctggt 23245303
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||| ||||| || |||||| ||| || ||||||||||||||
Sbjct: 17100949 atcttcaacacttatggtccacgcatgaacatcgatgatggccgtgttgt 17100900
Score = 42.1 bits (21), Expect = 0.15
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 57 cgtatcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||| |||||||||||||| || | |||||| |||| ||||| ||||||||
Sbjct: 19854095 cgtattttcaacacatatgggcccagaatgtgccttgatgatgggcgtgttgt 19854147
>gb|CB255558.1|CB255558 38-E010697-019-002-K10-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768K102Q 5-PRIME, mRNA sequence
Length = 571
Score = 79.8 bits (40), Expect = 7e-013
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 102 cgtgttgtcagttaantcgttgctcaggcactgangaangagccattgacggtttatggt 161
|||||||| ||| | ||||||| |||||||| | ||| ||||||||||| ||||| |||
Sbjct: 37 cgtgttgttagtaacttcgttgcacaggcactaaggaaagagccattgactgtttacggt 96
Query: 162 gatggaaagcaaaccaggagtttccaatatgtt 194
||||| ||||| || ||||||||||||| ||||
Sbjct: 97 gatgggaagcagacaaggagtttccaatttgtt 129
>gb|N37324.1|N37324 18551 Lambda-PRL2 Arabidopsis thaliana cDNA clone 209L6T7, mRNA
sequence
Length = 541
Score = 77.8 bits (39), Expect = 3e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||| |||||||||||||| ||||| || ||||||||||| | ||| ||||||
Sbjct: 263 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 322
Query: 201 ctggtcgagggtctgatga 219
||||| || ||||||||||
Sbjct: 323 ctggtggaaggtctgatga 341
>gb|AV549274.1|AV549274 AV549274 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ05f08R 5', mRNA sequence
Length = 281
Score = 67.9 bits (34), Expect = 3e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 118 tcgttgctcaggcactgangaangagccattgacggtttatggtgatggaaagcaaacca 177
||||||| |||||| | | || ||||| ||||| |||||||||||||| ||||| || |
Sbjct: 192 tcgttgcccaggcattaagaaaagagcctttgactgtttatggtgatggtaagcagacta 251
Query: 178 ggagtttccaatatgtttctgatctggt 205
|||||||||| | ||| |||||||||||
Sbjct: 252 ggagtttccagtttgtctctgatctggt 279
>gb|BP582514.1|BP582514 BP582514 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-36-J02 3',
mRNA sequence
Length = 457
Score = 65.9 bits (33), Expect = 1e-008
Identities = 127/159 (79%)
Strand = Plus / Minus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 455 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 396
Query: 270 gagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgg 329
|| ||||||||||| ||||| || || || || || || || || ||||| |||||| |
Sbjct: 395 gaattcaccatgctcgagctcgctaaggtggttcaagagacaattgacccgaacgcaaag 336
Query: 330 atcgagttccgtcagaacacccangacgacccacacaag 368
|| |||||| | | ||||| | |||||||||||||||
Sbjct: 335 atagagttcagaccaaacacagaggacgacccacacaag 297
>gb|BP585895.1|BP585895 BP585895 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-04-E21 3',
mRNA sequence
Length = 450
Score = 65.9 bits (33), Expect = 1e-008
Identities = 127/159 (79%)
Strand = Plus / Minus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 432 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 373
Query: 270 gagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgg 329
|| ||||||||||| ||||| || || || || || || || || ||||| |||||| |
Sbjct: 372 gaattcaccatgctcgagctcgctaaggtggttcaagagacaattgacccgaacgcaaag 313
Query: 330 atcgagttccgtcagaacacccangacgacccacacaag 368
|| |||||| | | ||||| | |||||||||||||||
Sbjct: 312 atagagttcagaccaaacacagaggacgacccacacaag 274
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
sequence
Length = 98937
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||| |||||||||||||| ||||| || ||||||||||| | ||| ||||||
Sbjct: 8870 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 8929
Query: 201 ctggt 205
|||||
Sbjct: 8930 ctggt 8934
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 9490 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 9549
Query: 270 gagttcaccatgctggagct 289
|| ||||||||||| |||||
Sbjct: 9550 gaattcaccatgctcgagct 9569
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete
sequence
Length = 106355
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||| |||||||||||||| ||||| || ||||||||||| | ||| ||||||
Sbjct: 7206 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 7147
Query: 201 ctggt 205
|||||
Sbjct: 7146 ctggt 7142
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 6586 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 6527
Query: 270 gagttcaccatgctggagct 289
|| ||||||||||| |||||
Sbjct: 6526 gaattcaccatgctcgagct 6507
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 65.9 bits (33), Expect = 1e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 141 gagccattgacggtttatggtgatggaaagcaaaccaggagtttccaatatgtttctgat 200
||||| ||||| |||||||||||||| ||||| || ||||||||||| | ||| ||||||
Sbjct: 19546840 gagcctttgactgtttatggtgatggtaagcagactaggagtttccagtttgtctctgat 19546781
Query: 201 ctggt 205
|||||
Sbjct: 19546780 ctggt 19546776
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 19546220 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 19546161
Query: 270 gagttcaccatgctggagct 289
|| ||||||||||| |||||
Sbjct: 19546160 gaattcaccatgctcgagct 19546141
>gb|AQ967293.1|AQ967293 LERIQ83TF LERG Arabidopsis thaliana genomic clone LERIQ83, DNA
sequence
Length = 389
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 75 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 134
Query: 270 gagttcaccatgctggagct 289
|| ||||||||||| |||||
Sbjct: 135 gaattcaccatgctcgagct 154
>gb|AQ969939.1|AQ969939 LERJR50TF LERG Arabidopsis thaliana genomic clone LERJR50, DNA
sequence
Length = 630
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 213 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 272
Query: 270 gagttcaccatgctggagct 289
|| ||||||||||| |||||
Sbjct: 273 gaattcaccatgctcgagct 292
>gb|AQ969940.1|AQ969940 LERJR50TR LERG Arabidopsis thaliana genomic clone LERJR50, DNA
sequence
Length = 529
Score = 63.9 bits (32), Expect = 4e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | ||||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 388 ggtctgatgaggttgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 329
Query: 270 gagttcaccatgctggagct 289
|| ||||||||||| |||||
Sbjct: 328 gaattcaccatgctcgagct 309
>gb|BP571979.1|BP571979 BP571979 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-78-E23 3',
mRNA sequence
Length = 444
Score = 58.0 bits (29), Expect = 2e-006
Identities = 126/159 (79%)
Strand = Plus / Minus
Query: 210 ggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggc 269
|||||||||| | |||||| || || ||||| || ||||||||||| || ||||||||
Sbjct: 432 ggtctgatgaggtcgatggagggagaacatgtcggtccatttaaccttggtaaccccggt 373
Query: 270 gagttcaccatgctggagcttgccaangttgtccaggacaccatcgaccccaacgcacgg 329
|| ||||||||||| ||||| || || || || || || || || ||||| |||||| |
Sbjct: 372 gaattcaccatgctcgagctcgctaaggtggttcaagagacaattgacccgaacgcaaag 313
Query: 330 atcgagttccgtcagaacacccangacgacccacacaag 368
|| |||||| | | ||||| | |||||||||||||||
Sbjct: 312 atagagttcagaccaaacacagaggacgacccacacaag 274
>gb|BP564295.1|BP564295 BP564295 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-07-B04 3',
mRNA sequence
Length = 442
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 223 tgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgc 282
||||||| || || ||||| || ||||||||||| || |||||||| || ||||||||||
Sbjct: 440 tgatggagggagaacatgtcggtccatttaaccttggtaaccccggtgaattcaccatgc 381
Query: 283 tggagct 289
| |||||
Sbjct: 380 tcgagct 374
>gb|AI100480.1|AI100480 34855 Lambda-PRL2 Arabidopsis thaliana cDNA clone 90J19XP 3', mRNA
sequence
Length = 460
Score = 52.0 bits (26), Expect = 2e-004
Identities = 78/94 (82%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 196 ctgatctggtcgagggtctgatgaagctgatggaaggcgagcatgtaggaccatttaacc 255
|||||||||| || |||||||||| | ||||||| || || ||||| || ||||||||||
Sbjct: 29 ctgatctggtggaaggtctgatgaggttgatggagggagaacatgtcggtccatttaacc 88
Query: 256 tgggcaaccccggcgagttcaccatgctggagct 289
| || ||||| | || ||||||||||| |||||
Sbjct: 89 ttgg-tacccccgtgaattcaccatgctcgagct 121
>gb|AV567402.1|AV567402 AV567402 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL13a08F 3', mRNA sequence
Length = 418
Score = 52.0 bits (26), Expect = 2e-004
Identities = 105/132 (79%)
Strand = Plus / Minus
Query: 237 catgtaggaccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaan 296
||||| || ||||||||||| || |||||||| || ||||||||||| ||||| || ||
Sbjct: 413 catgtcggtccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaag 354
Query: 297 gttgtccaggacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangac 356
|| || || || || || ||||| |||||| ||| |||||| | | ||||| | |||
Sbjct: 353 gtggttcaagagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggac 294
Query: 357 gacccacacaag 368
||||||||||||
Sbjct: 293 gacccacacaag 282
>gb|BP575347.1|BP575347 BP575347 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-12-A08 3',
mRNA sequence
Length = 421
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 224 gatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcgagttcaccatgct 283
|||||| || || ||||| || ||||||||||| || |||||||| || |||||||||||
Sbjct: 418 gatggagggagaacatgtcggtccatttaaccttggtaaccccggtgaattcaccatgct 359
Query: 284 ggagct 289
|||||
Sbjct: 358 cgagct 353
>gb|AV788561.1|AV788561 AV788561 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-80-C09 3',
mRNA sequence
Length = 420
Score = 50.1 bits (25), Expect = 6e-004
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 246 ccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccag 305
||||||||||| || |||||||| || ||||||||||| ||||| || || || || ||
Sbjct: 416 ccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggttcaa 357
Query: 306 gacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacac 365
|| || || ||||| |||||| ||| |||||| | | ||||| | ||||||||||||
Sbjct: 356 gagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacgacccacac 297
Query: 366 aag 368
|||
Sbjct: 296 aag 294
>gb|AV814478.1|AV814478 AV814478 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-83-C10 3',
mRNA sequence
Length = 395
Score = 50.1 bits (25), Expect = 6e-004
Identities = 98/123 (79%)
Strand = Plus / Minus
Query: 246 ccatttaacctgggcaaccccggcgagttcaccatgctggagcttgccaangttgtccag 305
||||||||||| || |||||||| || ||||||||||| ||||| || || || || ||
Sbjct: 391 ccatttaaccttggtaaccccggtgaattcaccatgctcgagctcgctaaggtggttcaa 332
Query: 306 gacaccatcgaccccaacgcacggatcgagttccgtcagaacacccangacgacccacac 365
|| || || ||||| |||||| ||| |||||| | | ||||| | ||||||||||||
Sbjct: 331 gagacaattgacccgaacgcaaagatagagttcagaccaaacacagaggacgacccacac 272
Query: 366 aag 368
|||
Sbjct: 271 aag 269
>gb|BP565000.1|BP565000 BP565000 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-F18 3',
mRNA sequence
Length = 414
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 246 ccatttaacctgggcaaccccggcgagttcaccatgctggagct 289
||||||||||| || |||||||| || ||||||||||| |||||
Sbjct: 398 ccatttaaccttggtaaccccggtgaattcaccatgctcgagct 355
>gb|BP592035.1|BP592035 BP592035 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-16-N04 3',
mRNA sequence
Length = 442
Score = 48.1 bits (24), Expect = 0.002
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 212 tctgatgaagctgatggaaggcgagcatgtaggaccatttaacctgggcaaccccggcga 271
|||||||| | ||||||| || || ||||| || ||||||||||| || |||||||| ||
Sbjct: 431 tctgatgagggtgatggagggaga-catgtcggtccatttaaccttggtaaccccggtga 373
Query: 272 gttcaccatgct 283
|||||||||||
Sbjct: 372 attcaccatgct 361
>gb|BP593145.1|BP593145 BP593145 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-20-P16 3',
mRNA sequence
Length = 442
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 237 catgtaggaccatttaacctgggcaaccccggcgagttcaccatgct 283
||||| || ||||||||||| || |||||||| || |||||||||||
Sbjct: 423 catgtcggtccatttaaccttggtaaccccggtgaattcaccatgct 377
>gb|AV782870.1|AV782870 AV782870 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-L20 3',
mRNA sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||||||||| ||||| ||| ||| || ||||| ||||||||
Sbjct: 675 atcttcaacacatatggtcctcgaatgaacatcgatgatgggcgtgttgt 626
>gb|BX839560.1|BX839560 BX839560 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS49ZB08 5PRIM, mRNA
sequence
Length = 896
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||| ||||| | |||||| |||| || ||||||||||||||
Sbjct: 709 atcttcaacacttatggtgcacgcatgagcatcgatgatggccgtgttgt 758
>gb|AV540797.1|AV540797 AV540797 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ155c11F 3', mRNA sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||||||||| ||||| ||| ||| || ||||| ||||||||
Sbjct: 443 atcttcaacacatatggtcctcgaatgaacatcgatgatgggcgtgttgt 394
>gb|CK121683.1|CK121683 202b24.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B24202
5-PRIME, mRNA sequence
Length = 762
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||| ||||| || |||||| ||| || ||||||||||||||
Sbjct: 277 atcttcaacacttatggtccacgcatgaacatcgatgatggccgtgttgt 326
>gb|AF375442.1| Arabidopsis thaliana AT5g59290/mnc17_180 mRNA, complete cds
Length = 1364
Score = 44.1 bits (22), Expect = 0.037
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 60 atcttcaacacatatggccctcgcatgtgcattgacgatggccgtgttgt 109
||||||||||||||||| ||||| ||| ||| || ||||| ||||||||
Sbjct: 688 atcttcaacacatatggtcctcgaatgaacatcgatgatgggcgtgttgt 737
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 250,020
Number of Sequences: 1013581
Number of extensions: 250020
Number of successful extensions: 15225
Number of sequences better than 0.5: 74
Number of HSP's better than 0.5 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14575
Number of HSP's gapped (non-prelim): 625
length of query: 805
length of database: 908,940,872
effective HSP length: 20
effective length of query: 785
effective length of database: 888,669,252
effective search space: 697605362820
effective search space used: 697605362820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)