BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023930.2.1
(544 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL461649.1|CL461649 SAIL_114_H01.v1 SAIL Collection Arab... 40 0.38
dbj|AB023036.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.38
gb|BT012662.1| Arabidopsis thaliana At3g23540 gene, complet... 40 0.38
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.38
ref|NM_001035671.1| Arabidopsis thaliana unknown protein AT... 40 0.38
ref|NM_113257.2| Arabidopsis thaliana catalytic AT3G23540 t... 40 0.38
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.38
>gb|CL461649.1|CL461649 SAIL_114_H01.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_114_H01.v1, DNA sequence
Length = 938
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 486 catattggattggattatat 505
||||||||||||||||||||
Sbjct: 403 catattggattggattatat 422
>dbj|AB023036.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDB19
Length = 90349
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 500 ttatatgtatcaacaagttc 519
||||||||||||||||||||
Sbjct: 10196 ttatatgtatcaacaagttc 10177
>gb|BT012662.1| Arabidopsis thaliana At3g23540 gene, complete cds
Length = 1701
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 500 ttatatgtatcaacaagttc 519
||||||||||||||||||||
Sbjct: 548 ttatatgtatcaacaagttc 529
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 500 ttatatgtatcaacaagttc 519
||||||||||||||||||||
Sbjct: 8391301 ttatatgtatcaacaagttc 8391282
>ref|NM_001035671.1| Arabidopsis thaliana unknown protein AT3G23540 transcript variant
AT3G23540.2 mRNA, complete cds
Length = 1715
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 500 ttatatgtatcaacaagttc 519
||||||||||||||||||||
Sbjct: 562 ttatatgtatcaacaagttc 543
>ref|NM_113257.2| Arabidopsis thaliana catalytic AT3G23540 transcript variant
AT3G23540.1 mRNA, complete cds
Length = 1921
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 500 ttatatgtatcaacaagttc 519
||||||||||||||||||||
Sbjct: 768 ttatatgtatcaacaagttc 749
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 500 ttatatgtatcaacaagttc 519
||||||||||||||||||||
Sbjct: 8445832 ttatatgtatcaacaagttc 8445813
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 208,585
Number of Sequences: 1013581
Number of extensions: 208585
Number of successful extensions: 14246
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14123
Number of HSP's gapped (non-prelim): 123
length of query: 544
length of database: 908,940,872
effective HSP length: 20
effective length of query: 524
effective length of database: 888,669,252
effective search space: 465662688048
effective search space used: 465662688048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)