BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|F20137.1|F20137 ATTS6176 AC16H Arabidopsis thaliana cDNA... 184 1e-044
gb|AI998209.1|AI998209 701515770 A. thaliana, Columbia Col-... 184 1e-044
gb|CK118493.1|CK118493 216o12.p1 AtM1 Arabidopsis thaliana ... 184 1e-044
gb|BP562727.2|BP562727 BP562727 RAFL14 Arabidopsis thaliana... 184 1e-044
gb|AY086601.1| Arabidopsis thaliana clone 26123 mRNA, compl... 184 1e-044
emb|BX821379.1|CNS0AA65 Arabidopsis thaliana Full-length cD... 184 1e-044
ref|NM_130332.2| Arabidopsis thaliana unknown protein AT2G4... 184 1e-044
ref|NM_180146.3| Arabidopsis thaliana unknown protein AT2G4... 184 1e-044
ref|NM_201981.2| Arabidopsis thaliana unknown protein AT2G4... 184 1e-044
gb|BT004783.1| Arabidopsis thaliana At2g47640 gene, complet... 182 5e-044
gb|BP571612.1|BP571612 BP571612 RAFL14 Arabidopsis thaliana... 159 8e-037
gb|AU226468.1|AU226468 AU226468 RAFL14 Arabidopsis thaliana... 147 3e-033
gb|AV549536.1|AV549536 AV549536 Arabidopsis thaliana roots ... 133 4e-029
gb|BP821598.1|BP821598 BP821598 RAFL19 Arabidopsis thaliana... 127 3e-027
gb|BP851888.1|BP851888 BP851888 RAFL21 Arabidopsis thaliana... 127 3e-027
gb|BP623210.1|BP623210 BP623210 RAFL17 Arabidopsis thaliana... 125 1e-026
gb|AI999102.1|AI999102 701554462 A. thaliana, Columbia Col-... 105 1e-020
gb|AV818857.1|AV818857 AV818857 RAFL11 Arabidopsis thaliana... 105 1e-020
gb|AV819279.1|AV819279 AV819279 RAFL11 Arabidopsis thaliana... 105 1e-020
gb|AV832022.1|AV832022 AV832022 RAFL11 Arabidopsis thaliana... 105 1e-020
gb|AV533116.1|AV533116 AV533116 Arabidopsis thaliana flower... 105 1e-020
gb|BP613407.1|BP613407 BP613407 RAFL16 Arabidopsis thaliana... 105 1e-020
gb|CB254025.1|CB254025 80-E015391-019-006-O19-T7R MPIZ-ADIS... 105 1e-020
gb|BP788381.1|BP788381 BP788381 RAFL7 Arabidopsis thaliana ... 105 1e-020
gb|BP851641.1|BP851641 BP851641 RAFL21 Arabidopsis thaliana... 105 1e-020
gb|AY042797.1| Arabidopsis thaliana small nuclear ribonucle... 105 1e-020
gb|AY087177.1| Arabidopsis thaliana clone 32457 mRNA, compl... 105 1e-020
ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G6... 105 1e-020
gb|BP665200.1|BP665200 BP665200 RAFL21 Arabidopsis thaliana... 101 2e-019
gb|CB264605.1|CB264605 49-E014658-035-002-A13-T7R MPIZ-ADIS... 98 2e-018
gb|BP636278.1|BP636278 BP636278 RAFL18 Arabidopsis thaliana... 98 2e-018
gb|AV820625.1|AV820625 AV820625 RAFL11 Arabidopsis thaliana... 92 1e-016
gb|BP581041.1|BP581041 BP581041 RAFL14 Arabidopsis thaliana... 92 1e-016
gb|BP645975.1|BP645975 BP645975 RAFL19 Arabidopsis thaliana... 90 6e-016
gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B... 88 2e-015
gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A... 88 2e-015
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 88 2e-015
gb|BP621376.1|BP621376 BP621376 RAFL16 Arabidopsis thaliana... 86 9e-015
gb|BP670363.1|BP670363 BP670363 RAFL21 Arabidopsis thaliana... 86 9e-015
gb|BP864529.1|BP864529 BP864529 RAFL21 Arabidopsis thaliana... 86 9e-015
gb|BP866835.1|BP866835 BP866835 RAFL21 Arabidopsis thaliana... 86 9e-015
gb|BP650469.1|BP650469 BP650469 RAFL19 Arabidopsis thaliana... 84 4e-014
gb|BP864880.1|BP864880 BP864880 RAFL21 Arabidopsis thaliana... 78 2e-012
gb|AV535104.1|AV535104 AV535104 Arabidopsis thaliana flower... 76 9e-012
gb|BP815339.1|BP815339 BP815339 RAFL19 Arabidopsis thaliana... 76 9e-012
gb|BP854615.1|BP854615 BP854615 RAFL21 Arabidopsis thaliana... 76 9e-012
gb|BP858325.1|BP858325 BP858325 RAFL21 Arabidopsis thaliana... 76 9e-012
gb|BP868432.1|BP868432 BP868432 RAFL21 Arabidopsis thaliana... 76 9e-012
gb|BP597520.1|BP597520 BP597520 RAFL15 Arabidopsis thaliana... 74 3e-011
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 64 3e-008
emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome ... 64 3e-008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 64 3e-008
gb|BP831765.1|BP831765 BP831765 RAFL19 Arabidopsis thaliana... 62 1e-007
gb|BP848760.1|BP848760 BP848760 RAFL21 Arabidopsis thaliana... 62 1e-007
gb|BP850718.1|BP850718 BP850718 RAFL21 Arabidopsis thaliana... 60 5e-007
gb|BP844944.1|BP844944 BP844944 RAFL21 Arabidopsis thaliana... 58 2e-006
gb|BP669463.1|BP669463 BP669463 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|BP867804.1|BP867804 BP867804 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|H36625.1|H36625 14293 Lambda-PRL2 Arabidopsis thaliana c... 52 1e-004
gb|CC884453.1|CC884453 SALK_113102.23.25.x Arabidopsis thal... 50 5e-004
gb|BP657733.1|BP657733 BP657733 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|BZ379263.1|BZ379263 SALK_113104.21.35.x Arabidopsis thal... 48 0.002
gb|AA395596.1|AA395596 27393 Lambda-PRL2 Arabidopsis thalia... 44 0.031
gb|AV786532.1|AV786532 AV786532 RAFL6 Arabidopsis thaliana ... 42 0.12
gb|BP808679.1|BP808679 BP808679 RAFL16 Arabidopsis thaliana... 42 0.12
gb|B09572.1|B09572 T22E16-Sp6 TAMU Arabidopsis thaliana gen... 40 0.48
emb|CR403500.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.48
>gb|F20137.1|F20137 ATTS6176 AC16H Arabidopsis thaliana cDNA clone TAP0004 similar to
Homo sapiens., mRNA sequence
Length = 574
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 131 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 190
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 191 actcaggttttaatcaattgccggaacaacaggaaacttcttggccgagtgagggcgttt 250
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 251 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 310
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 311 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 370
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 371 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 419
>gb|AI998209.1|AI998209 701515770 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701515770, mRNA sequence
Length = 515
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Minus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 413 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 354
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 353 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 294
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 293 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 234
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 233 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 174
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 173 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 125
>gb|CK118493.1|CK118493 216o12.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011O12216
5-PRIME, mRNA sequence
Length = 582
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 143 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 202
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 203 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 262
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 263 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 322
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 323 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 382
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 383 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 431
>gb|BP562727.2|BP562727 BP562727 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-O15 5',
mRNA sequence
Length = 491
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 137 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 196
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 197 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 256
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 257 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 316
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 317 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 376
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 377 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 425
>gb|AY086601.1| Arabidopsis thaliana clone 26123 mRNA, complete sequence
Length = 619
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 164 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 223
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 224 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 283
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 284 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 343
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 344 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 403
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 404 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 452
>emb|BX821379.1|CNS0AA65 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL37ZF02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 586
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 139 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 198
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 199 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 258
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 259 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 318
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 319 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 378
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 379 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 427
>ref|NM_130332.2| Arabidopsis thaliana unknown protein AT2G47640 transcript variant
AT2G47640.1 mRNA, complete cds
Length = 624
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 169 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 228
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 229 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 288
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 289 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 348
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 349 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 408
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 409 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 457
>ref|NM_180146.3| Arabidopsis thaliana unknown protein AT2G47640 transcript variant
AT2G47640.2 mRNA, complete cds
Length = 586
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 131 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 190
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 191 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 250
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 251 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 310
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 311 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 370
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 371 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 419
>ref|NM_201981.2| Arabidopsis thaliana unknown protein AT2G47640 transcript variant
AT2G47640.3 mRNA, complete cds
Length = 594
Score = 184 bits (93), Expect = 1e-044
Identities = 240/289 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 139 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 198
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 199 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 258
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 259 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 318
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 319 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 378
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
|| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 379 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 427
>gb|BT004783.1| Arabidopsis thaliana At2g47640 gene, complete cds
Length = 327
Score = 182 bits (92), Expect = 5e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 40 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 99
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 100 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 159
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 160 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 219
Query: 297 accggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatg 356
|| || |||||||||||||| || || |||||||||| || |||||||||||||||||
Sbjct: 220 actgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatg 279
Query: 357 ttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatga 404
|| || ||||| || |||||||| || ||||||||||| || ||||||
Sbjct: 280 tttctacgtggagactcggtcattatcgtcctcaggaatccaaaatga 327
>gb|BP571612.1|BP571612 BP571612 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-76-O18 3',
mRNA sequence
Length = 451
Score = 159 bits (80), Expect = 8e-037
Identities = 237/288 (82%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 118 aggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataata 177
|||||||||| |||| |||||| || ||||| || || |||||||||||||||||||| |
Sbjct: 451 aggaagaggaattcaacaccgg-ccactctctgttcttatgatgagcgtcaagaataaca 393
Query: 178 cccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttcg 237
| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || || |
Sbjct: 392 ctcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgtttg 333
Query: 238 atcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaaga 297
| | |||||||||||||||||||| || || || ||||| ||||| ||||| ||||| |
Sbjct: 332 acagacactgcaacatggttcttgaaaatgtcagagagatttggactgaggttccgaaaa 273
Query: 298 ccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgt 357
| || |||||||||||||| || || |||||||||| || ||||||||| ||||||||
Sbjct: 272 ctgggaaaggcaagaagaaagcacttccggtgaacagagatcggttcataaccaagatgt 213
Query: 358 tcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 212 ttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 165
>gb|AU226468.1|AU226468 AU226468 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-35-O15 3',
mRNA sequence
Length = 425
Score = 147 bits (74), Expect = 3e-033
Identities = 206/250 (82%)
Strand = Plus / Minus
Query: 156 atgatgagcgtcaagaataatacccaggttcttatcaactgccggaacaacaagaagttg 215
|||||||||||||||||||| || |||||| | ||||| ||||||||||||| ||| |
Sbjct: 409 atgatgagcgtcaagaataacactcaggttttaatcaattgccggaacaacaggaaactt 350
Query: 216 cttggtcgcgtgcgagccttcgatcggcactgcaacatggttcttgagaacgttagggag 275
||||| || ||| | || || || | |||||||||||||||||||| || || || |||
Sbjct: 349 cttgggcgagtgagggcgtttgacagacactgcaacatggttcttgaaaatgtcagagag 290
Query: 276 atgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaag 335
|||||||| ||||| || || || || |||||||||||||| || || ||| ||||||
Sbjct: 289 atgtggactgaggttcccaaaactgggaaaggcaagaagaaagcacttccgttgaacaga 230
Query: 336 gacaggttcataagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaac 395
|| ||||||||||||||||||| || ||||| || |||||||| || |||||||||||
Sbjct: 229 gatcggttcataagcaagatgtttctacgtggagactcggtcattatcgtcctcaggaat 170
Query: 396 ccgaaatgag 405
|| |||||||
Sbjct: 169 ccaaaatgag 160
>gb|AV549536.1|AV549536 AV549536 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ09a07R 5', mRNA sequence
Length = 352
Score = 133 bits (67), Expect = 4e-029
Identities = 139/163 (85%)
Strand = Plus / Plus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggt 302
|||||||||||||||||||| || || || ||||||||||| ||||| ||||| || ||
Sbjct: 28 cactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaaactggg 87
Query: 303 aaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctc 362
|||||||||||||| || || |||||||||| || ||||||||||||||||||| ||
Sbjct: 88 aaaggcaagaagaaagcacttccggtgaacagagatcggttcataagcaagatgtttcta 147
Query: 363 cgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 148 cgtggagactcggtcattatcgtcctcaggaatccaaaatgag 190
>gb|BP821598.1|BP821598 BP821598 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-58-J16 5',
mRNA sequence
Length = 398
Score = 127 bits (64), Expect = 3e-027
Identities = 216/264 (81%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 130 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 189
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| |||||||| |||| ||| | ||||| || ||| | || ||
Sbjct: 190 actcaggttttaatcaattgccggaaaaacaggaaacttcttgggcgagtgagggcgttt 249
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| ||||
Sbjct: 250 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggt-tcgaaa 308
Query: 297 accggtaaaggcaagaagaaggctctcccgg-tgaacaaggacaggttcataagcaagat 355
|| || |||||||||||||| || || |||| |||||| || ||||||||||||||||
Sbjct: 309 actgggaaaggcaagaagaaagcacttccggctgaacagagatcggttcataagcaagat 368
Query: 356 gttcctccgtggggattcggtcat 379
||| || ||||| || ||||||||
Sbjct: 369 gtttctacgtggagactcggtcat 392
>gb|BP851888.1|BP851888 BP851888 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-17-N19 5',
mRNA sequence
Length = 388
Score = 127 bits (64), Expect = 3e-027
Identities = 166/200 (83%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 155 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 214
Query: 177 acccaggttcttatcaactgccggaacaacaagaagttgcttggtcgcgtgcgagccttc 236
|| |||||| | ||||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 215 actcaggttttaatcaattgccggaacaacaggaaacttcttgggcgagtgagggcgttt 274
Query: 237 gatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaag 296
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 275 gacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaa 334
Query: 297 accggtaaaggcaagaagaa 316
|| || ||||||||||||||
Sbjct: 335 actgggaaaggcaagaagaa 354
>gb|BP623210.1|BP623210 BP623210 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-05-P16 3',
mRNA sequence
Length = 368
Score = 125 bits (63), Expect = 1e-026
Identities = 138/163 (84%)
Strand = Plus / Minus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggt 302
|||||||||||||||||||| || || || ||||||||||| ||||| ||||| || ||
Sbjct: 355 cactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaaactggg 296
Query: 303 aaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctc 362
|||||||||||||| || || || ||||||| || ||||||||||||||||||| ||
Sbjct: 295 aaaggcaagaagaaagcacttcccgtgaacagagatcggttcataagcaagatgtttcta 236
Query: 363 cgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 235 cgtggagactcggtcattatcgtcctcaggaatccaaaatgag 193
>gb|AI999102.1|AI999102 701554462 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701554462, mRNA sequence
Length = 379
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 330 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 271
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 270 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 211
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 210 tgcgtggagactcagtcattatcgtcctcaggaaccc 174
>gb|AV818857.1|AV818857 AV818857 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-A19 3',
mRNA sequence
Length = 412
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 276 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 217
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 216 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 157
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 156 tgcgtggagactcagtcattatcgtcctcaggaaccc 120
>gb|AV819279.1|AV819279 AV819279 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-03-H06 3',
mRNA sequence
Length = 435
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 355 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 296
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 295 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 236
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 235 tgcgtggagactcagtcattatcgtcctcaggaaccc 199
>gb|AV832022.1|AV832022 AV832022 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-01-A19 5',
mRNA sequence
Length = 547
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 264 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 323
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 324 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 383
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 384 tgcgtggagactcagtcattatcgtcctcaggaaccc 420
>gb|AV533116.1|AV533116 AV533116 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB056b01F 3', mRNA sequence
Length = 591
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 358 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 299
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 298 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 239
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 238 tgcgtggagactcagtcattatcgtcctcaggaaccc 202
>gb|BP613407.1|BP613407 BP613407 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-93-A15 3',
mRNA sequence
Length = 514
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 355 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 296
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 295 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 236
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 235 tgcgtggagactcagtcattatcgtcctcaggaaccc 199
>gb|CB254025.1|CB254025 80-E015391-019-006-O19-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O196Q 5-PRIME, mRNA sequence
Length = 535
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 242 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 301
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 302 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 361
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 362 tgcgtggagactcagtcattatcgtcctcaggaaccc 398
>gb|BP788381.1|BP788381 BP788381 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-33-J03 3',
mRNA sequence
Length = 403
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 358 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 299
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 298 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 239
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 238 tgcgtggagactcagtcattatcgtcctcaggaaccc 202
>gb|BP851641.1|BP851641 BP851641 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-17-B11 5',
mRNA sequence
Length = 396
Score = 105 bits (53), Expect = 1e-020
Identities = 165/201 (82%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 155 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 214
Query: 177 acccaggttctta-tcaactgccggaacaacaagaagttgcttggtcgcgtgcgagcctt 235
|| |||||| | | |||| ||||||||||||| ||| | ||||| || ||| | || ||
Sbjct: 215 actcaggttttaactcaattgccggaacaacaggaaacttcttgggcgagtgagggcgtt 274
Query: 236 cgatcggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaa 295
|| | |||||||||||||||||||| || || || ||||||||||| ||||| |||||
Sbjct: 275 tgacagacactgcaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaa 334
Query: 296 gaccggtaaaggcaagaagaa 316
|| || |||||||| |||||
Sbjct: 335 aactgggaaaggcaacaagaa 355
>gb|AY042797.1| Arabidopsis thaliana small nuclear ribonucleoprotein-like protein
(F26K9.270) mRNA, complete cds
Length = 541
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 266 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 325
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 326 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 385
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 386 tgcgtggagactcagtcattatcgtcctcaggaaccc 422
>gb|AY087177.1| Arabidopsis thaliana clone 32457 mRNA, complete sequence
Length = 646
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 287 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 346
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 347 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 406
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 407 tgcgtggagactcagtcattatcgtcctcaggaaccc 443
>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds
Length = 1063
Score = 105 bits (53), Expect = 1e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 284 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 343
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 344 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 403
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 404 tgcgtggagactcagtcattatcgtcctcaggaaccc 440
>gb|BP665200.1|BP665200 BP665200 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-15-H11 3',
mRNA sequence
Length = 408
Score = 101 bits (51), Expect = 2e-019
Identities = 136/163 (83%), Gaps = 1/163 (0%)
Strand = Plus / Minus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggt 302
|||| ||||||||||||||| || || || ||||||||||| ||||| ||||| || ||
Sbjct: 252 cactccaacatggttcttgaaaatgtcagagagatgtggactgaggttccgaaaactggg 193
Query: 303 aaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctc 362
|||||||||||||| || || || ||||||| || ||||||||||||||||||| ||
Sbjct: 192 aaaggcaagaagaaagcacttcc-gtgaacagagatcggttcataagcaagatgtttcta 134
Query: 363 cgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
||||| || |||||||| || |||||||||| || |||||||
Sbjct: 133 cgtggagactcggtcattatcctcctcaggaatccaaaatgag 91
>gb|CB264605.1|CB264605 49-E014658-035-002-A13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000A132Q 5-PRIME, mRNA sequence
Length = 560
Score = 97.6 bits (49), Expect = 2e-018
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || | || |||||||| ||||| ||||| ||||
Sbjct: 250 ggcactgcaacatggttcttgaaaatgtcatagaaatgtggactgaggttccgaaaaccg 309
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 310 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 369
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 370 tgcgtggagactcagtcattatcgtcctcaggaaccc 406
>gb|BP636278.1|BP636278 BP636278 RAFL18 Arabidopsis thaliana cDNA clone RAFL18-03-P22 3',
mRNA sequence
Length = 469
Score = 97.6 bits (49), Expect = 2e-018
Identities = 131/157 (83%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 402 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaa-accg 344
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 343 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 284
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 283 tgcgtggagactcagtcattatcgtcctcaggaaccc 247
>gb|AV820625.1|AV820625 AV820625 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-11-H04 3',
mRNA sequence
Length = 404
Score = 91.7 bits (46), Expect = 1e-016
Identities = 131/158 (82%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggacc-gaggtaccgaagacc 299
|||||||||||||||||||||| || || || || ||||||| | ||||| ||||| |||
Sbjct: 277 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggagctgaggttccgaaaacc 218
Query: 300 ggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttc 359
|| ||||| |||||||| ||||| || || |||| || | ||||| ||||||||||||
Sbjct: 217 ggaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttc 158
Query: 360 ctccgtggggattcggtcatcattgtcctcaggaaccc 397
|| ||||| || || ||||| || ||||||||||||||
Sbjct: 157 ctgcgtggagactcagtcattatcgtcctcaggaaccc 120
>gb|BP581041.1|BP581041 BP581041 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-30-D07 3',
mRNA sequence
Length = 467
Score = 91.7 bits (46), Expect = 1e-016
Identities = 131/158 (82%), Gaps = 1/158 (0%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 359 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 300
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 299 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 240
Query: 361 tccgtgggga-ttcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 239 tgcgtggagagctcagtcattatcgtcctcaggaaccc 202
>gb|BP645975.1|BP645975 BP645975 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-70-J05 3',
mRNA sequence
Length = 393
Score = 89.7 bits (45), Expect = 6e-016
Identities = 130/157 (82%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || ||||| || ||||| ||||| ||||
Sbjct: 359 ggcactgcaacatggttcttgaaaatgtcagagaaatgtg-actgaggttccgaaaaccg 301
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 300 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 241
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 240 tgcgtggagactcagtcattatcgtcctcaggaaccc 204
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
sequence
Length = 98937
Score = 87.7 bits (44), Expect = 2e-015
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
|||| ||||| || || |||||||||||||| || || |||||||||| || ||||||
Sbjct: 10327 aggttccgaaaactgggaaaggcaagaagaaagcacttccggtgaacagagatcggttca 10268
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
||||||||||||| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 10267 taagcaagatgtttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 10208
Score = 63.9 bits (32), Expect = 3e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 10768 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 10709
Query: 177 acccaggt 184
|| |||||
Sbjct: 10708 actcaggt 10701
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|||||||||||||||||||| || || || ||||||||||| ||||||
Sbjct: 10452 cactgcaacatggttcttgaaaatgtcagagagatgtggactgaggta 10405
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete
sequence
Length = 106355
Score = 87.7 bits (44), Expect = 2e-015
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
|||| ||||| || || |||||||||||||| || || |||||||||| || ||||||
Sbjct: 5749 aggttccgaaaactgggaaaggcaagaagaaagcacttccggtgaacagagatcggttca 5808
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
||||||||||||| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 5809 taagcaagatgtttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 5868
Score = 63.9 bits (32), Expect = 3e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 5308 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 5367
Query: 177 acccaggt 184
|| |||||
Sbjct: 5368 actcaggt 5375
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|||||||||||||||||||| || || || ||||||||||| ||||||
Sbjct: 5624 cactgcaacatggttcttgaaaatgtcagagagatgtggactgaggta 5671
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 87.7 bits (44), Expect = 2e-015
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
|||| ||||| || || |||||||||||||| || || |||||||||| || ||||||
Sbjct: 19545383 aggttccgaaaactgggaaaggcaagaagaaagcacttccggtgaacagagatcggttca 19545442
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaacccgaaatgag 405
||||||||||||| || ||||| || |||||||| || ||||||||||| || |||||||
Sbjct: 19545443 taagcaagatgtttctacgtggagactcggtcattatcgtcctcaggaatccaaaatgag 19545502
Score = 63.9 bits (32), Expect = 3e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 117 gaggaagaggagttcagcaccggtcctctctcggtgctcatgatgagcgtcaagaataat 176
||||||||||| |||| |||||| || ||||| || || ||||||||||||||||||||
Sbjct: 19544942 gaggaagaggaattcaacaccgggccactctctgttcttatgatgagcgtcaagaataac 19545001
Query: 177 acccaggt 184
|| |||||
Sbjct: 19545002 actcaggt 19545009
Score = 56.0 bits (28), Expect = 8e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggta 290
|||||||||||||||||||| || || || ||||||||||| ||||||
Sbjct: 19545258 cactgcaacatggttcttgaaaatgtcagagagatgtggactgaggta 19545305
>gb|BP621376.1|BP621376 BP621376 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-41-B20 3',
mRNA sequence
Length = 426
Score = 85.7 bits (43), Expect = 9e-015
Identities = 124/151 (82%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||| ||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 354 ggcactccaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 295
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 294 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 235
Query: 361 tccgtggggattcggtcatcattgtcctcag 391
| ||||| || || ||||| || ||||||||
Sbjct: 234 tgcgtggagactcagtcattatcgtcctcag 204
>gb|BP670363.1|BP670363 BP670363 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-34-M09 3',
mRNA sequence
Length = 419
Score = 85.7 bits (43), Expect = 9e-015
Identities = 128/155 (82%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 243 cactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccggt 302
|||||||||||||||||||| || || || || ||||| || ||||| ||||| |||||
Sbjct: 351 cactgcaacatggttcttgaaaatgtcagagaaatgtg-actgaggttccgaaaaccgga 293
Query: 303 aaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcctc 362
||||| |||||||| ||||| || || |||| || | ||||| ||||||||||||||
Sbjct: 292 aaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcctg 233
Query: 363 cgtggggattcggtcatcattgtcctcaggaaccc 397
||||| || || ||||| || ||||||||||||||
Sbjct: 232 cgtggagactcagtcattatcgtcctcaggaaccc 198
>gb|BP864529.1|BP864529 BP864529 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-70-I12 5',
mRNA sequence
Length = 390
Score = 85.7 bits (43), Expect = 9e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 253 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 312
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 313 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 372
Query: 361 tccgtgg 367
| |||||
Sbjct: 373 tgcgtgg 379
>gb|BP866835.1|BP866835 BP866835 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-79-B01 5',
mRNA sequence
Length = 381
Score = 85.7 bits (43), Expect = 9e-015
Identities = 106/127 (83%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 255 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 314
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 315 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 374
Query: 361 tccgtgg 367
| |||||
Sbjct: 375 tgcgtgg 381
>gb|BP650469.1|BP650469 BP650469 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-84-H22 3',
mRNA sequence
Length = 410
Score = 83.8 bits (42), Expect = 4e-014
Identities = 129/157 (82%), Gaps = 2/157 (1%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 355 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 296
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
||| | |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 295 --aaaagaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 238
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 237 tgcgtggagactcagtcattatcgtcctcaggaaccc 201
>gb|BP864880.1|BP864880 BP864880 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-72-C14 5',
mRNA sequence
Length = 390
Score = 77.8 bits (39), Expect = 2e-012
Identities = 105/127 (82%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 259 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 318
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| ||| |||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 319 gaaaaggaaaggagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 378
Query: 361 tccgtgg 367
| |||||
Sbjct: 379 tgcgtgg 385
>gb|AV535104.1|AV535104 AV535104 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB091a12F 3', mRNA sequence
Length = 326
Score = 75.8 bits (38), Expect = 9e-012
Identities = 101/122 (82%)
Strand = Plus / Minus
Query: 276 atgtggaccgaggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaag 335
|||||||| ||||| ||||| ||||| ||||| |||||||| ||||| || || ||||
Sbjct: 323 atgtggactgaggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacaga 264
Query: 336 gacaggttcataagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaac 395
|| | ||||| |||||||||||||| ||||| || || ||||| || ||||||||||||
Sbjct: 263 gatcgattcatcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaac 204
Query: 396 cc 397
||
Sbjct: 203 cc 202
>gb|BP815339.1|BP815339 BP815339 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-38-I16 5',
mRNA sequence
Length = 391
Score = 75.8 bits (38), Expect = 9e-012
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 256 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 315
Query: 301 gtaaaggcaagaagaaggctct 322
| ||||| |||||||| |||||
Sbjct: 316 gaaaaggaaagaagaaagctct 337
>gb|BP854615.1|BP854615 BP854615 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-23-N20 5',
mRNA sequence
Length = 371
Score = 75.8 bits (38), Expect = 9e-012
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 281 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 340
Query: 301 gtaaaggcaagaagaaggctct 322
| ||||| |||||||| |||||
Sbjct: 341 gaaaaggaaagaagaaagctct 362
>gb|BP858325.1|BP858325 BP858325 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-36-N11 5',
mRNA sequence
Length = 398
Score = 75.8 bits (38), Expect = 9e-012
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 257 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 316
Query: 301 gtaaaggcaagaagaaggctct 322
| ||||| |||||||| |||||
Sbjct: 317 gaaaaggaaagaagaaagctct 338
>gb|BP868432.1|BP868432 BP868432 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-84-F15 5',
mRNA sequence
Length = 396
Score = 75.8 bits (38), Expect = 9e-012
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||||| || || || || |||||||| ||||| ||||| ||||
Sbjct: 255 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggttccgaaaaccg 314
Query: 301 gtaaaggcaagaagaaggctct 322
| ||||| |||||||| |||||
Sbjct: 315 gaaaaggaaagaagaaagctct 336
>gb|BP597520.1|BP597520 BP597520 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-39-O12 3',
mRNA sequence
Length = 435
Score = 73.8 bits (37), Expect = 3e-011
Identities = 128/157 (81%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggtaccgaagaccg 300
|||||||||||||||||||| | || || || || || ||||| ||| | ||||| ||||
Sbjct: 357 ggcactgcaacatggttcttaa-aatgtcagagaaatttggactgagtttccgaaaaccg 299
Query: 301 gtaaaggcaagaagaaggctctcccggtgaacaaggacaggttcataagcaagatgttcc 360
| ||||| |||||||| ||||| || || |||| || | ||||| |||||||||||||
Sbjct: 298 gaaaaggaaagaagaaagctcttcctgttaacagagatcgattcatcagcaagatgttcc 239
Query: 361 tccgtggggattcggtcatcattgtcctcaggaaccc 397
| ||||| || || ||||| || ||||||||||||||
Sbjct: 238 tgcgtggagactcagtcattatcgtcctcaggaaccc 202
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 63.9 bits (32), Expect = 3e-008
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 286 aggtaccgaagaccggtaaaggcaagaagaaggctctcccggtgaacaaggacaggttca 345
|||| ||||| ||||| ||||| |||||||| ||||| || || |||| || | ||||
Sbjct: 23179076 aggttccgaaaaccggaaaaggaaagaagaaagctcttcctgttaacagagatcgattca 23179017
Query: 346 taagcaagatgttcctccgtggggattcggtcatcattgtcctcaggaaccc 397
| |||||||||||||| ||||| || || ||||| || ||||||||||||||
Sbjct: 23179016 tcagcaagatgttcctgcgtggagactcagtcattatcgtcctcaggaaccc 23178965
Score = 50.1 bits (25), Expect = 5e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 241 ggcactgcaacatggttcttgagaacgttagggagatgtggaccgaggt 289
|||||||||||||||||||||| || || || || |||||||| |||||
Sbjct: 23179209 ggcactgcaacatggttcttgaaaatgtcagagaaatgtggactgaggt 23179161
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 295,762
Number of Sequences: 1013581
Number of extensions: 295762
Number of successful extensions: 22719
Number of sequences better than 0.5: 67
Number of HSP's better than 0.5 without gapping: 65
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22350
Number of HSP's gapped (non-prelim): 338
length of query: 675
length of database: 908,940,872
effective HSP length: 20
effective length of query: 655
effective length of database: 888,669,252
effective search space: 582078360060
effective search space used: 582078360060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)