BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2950089.2.3
         (824 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CB074863.1|CB074863  EST03016 Arabidopsis Acute Ozone poo...    48   0.002
gb|CB185798.1|CB185798  EST00725 Arabidopsis avirulent Pseud...    42   0.15 

>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
           Forward-Subtracted Library Arabidopsis thaliana cDNA
           clone AtAOzLH10 similar to putative protein, mRNA
           sequence
          Length = 305

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 801 ccgcgtacctgcccgggcggccgc 824
           ||||||||||||||||||||||||
Sbjct: 274 ccgcgtacctgcccgggcggccgc 297



>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
           library Arabidopsis thaliana cDNA clone AVR2-A8 similar
           to hypothetical protein targeted to chloroplast, mRNA
           sequence
          Length = 456

 Score = 42.1 bits (21), Expect = 0.15
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 804 cgtacctgcccgggcggccgc 824
           |||||||||||||||||||||
Sbjct: 435 cgtacctgcccgggcggccgc 455



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 247,040
Number of Sequences: 1013581
Number of extensions: 247040
Number of successful extensions: 17353
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17351
Number of HSP's gapped (non-prelim): 2
length of query: 824
length of database: 908,940,872
effective HSP length: 20
effective length of query: 804
effective length of database: 888,669,252
effective search space: 714490078608
effective search space used: 714490078608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)