BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA712807.1|AA712807 32366 Lambda-PRL2 Arabidopsis thalia... 131 2e-028
gb|AI999662.1|AI999662 701556935 A. thaliana, Columbia Col-... 131 2e-028
emb|A85207.1| Sequence 1 from Patent WO9841642 131 2e-028
dbj|BD057884.1| Method and means for modulating plant cell ... 131 2e-028
emb|AX506329.1| Sequence 1024 from Patent WO0216655 131 2e-028
gb|AY088339.1| Arabidopsis thaliana clone 5750 mRNA, comple... 131 2e-028
dbj|AK175719.1| Arabidopsis thaliana mRNA for putative cycl... 131 2e-028
dbj|AK175828.1| Arabidopsis thaliana mRNA for putative cycl... 131 2e-028
dbj|AK176119.1| Arabidopsis thaliana mRNA for putative cycl... 131 2e-028
emb|AJ000016.1|ATCKS1SUC Arabidopsis thaliana mRNA for Cks1... 131 2e-028
ref|NM_128355.1| Arabidopsis thaliana CKS1; cyclin-dependen... 131 2e-028
gb|BP839263.1|BP839263 BP839263 RAFL19 Arabidopsis thaliana... 115 1e-023
gb|BP816969.1|BP816969 BP816969 RAFL19 Arabidopsis thaliana... 107 3e-021
gb|R87032.1|R87032 16228 Lambda-PRL2 Arabidopsis thaliana c... 78 3e-012
emb|BX821107.1|CNS0AA39 Arabidopsis thaliana Full-length cD... 76 1e-011
emb|AL759472.1| Arabidopsis thaliana T-DNA flanking sequenc... 68 2e-009
emb|AL759473.1| Arabidopsis thaliana T-DNA flanking sequenc... 68 2e-009
emb|A85208.1| Sequence 2 from Patent WO9841642 68 2e-009
dbj|BD057885.1| Method and means for modulating plant cell ... 68 2e-009
gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2... 68 2e-009
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 68 2e-009
gb|BP832130.1|BP832130 BP832130 RAFL19 Arabidopsis thaliana... 62 2e-007
gb|AV553882.1|AV553882 AV553882 Arabidopsis thaliana roots ... 54 4e-005
emb|AX506519.1| Sequence 1214 from Patent WO0216655 54 4e-005
gb|BT010784.1| Arabidopsis thaliana At2g27970 mRNA, complet... 54 4e-005
gb|BT011257.1| Arabidopsis thaliana At2g27970 gene, complet... 54 4e-005
emb|BX819045.1|CNS0AAEG Arabidopsis thaliana Full-length cD... 54 4e-005
ref|NM_128356.4| Arabidopsis thaliana CKS2; cyclin-dependen... 54 4e-005
gb|BH618263.1|BH618263 SALK_038810 Arabidopsis thaliana TDN... 46 0.009
gb|BH618264.1|BH618264 SALK_038811 Arabidopsis thaliana TDN... 46 0.009
>gb|AA712807.1|AA712807 32366 Lambda-PRL2 Arabidopsis thaliana cDNA clone 198P11T7, mRNA
sequence
Length = 483
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 40 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 99
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 100 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 159
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 160 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 219
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 220 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 273
>gb|AI999662.1|AI999662 701556935 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701556935, mRNA sequence
Length = 468
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Minus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 411 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 352
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 351 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 292
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 291 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 232
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 231 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 178
>emb|A85207.1| Sequence 1 from Patent WO9841642
Length = 454
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 15 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 74
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 75 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 134
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 135 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 194
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 195 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 248
>dbj|BD057884.1| Method and means for modulating plant cell cycle proteins and their
use in plant cell growth control
Length = 454
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 15 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 74
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 75 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 134
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 135 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 194
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 195 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 248
>emb|AX506329.1| Sequence 1024 from Patent WO0216655
Length = 264
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 1 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 60
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 61 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 120
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 121 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 180
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 181 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 234
>gb|AY088339.1| Arabidopsis thaliana clone 5750 mRNA, complete sequence
Length = 527
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 86 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 145
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 146 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 205
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 206 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 265
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 266 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 319
>dbj|AK175719.1| Arabidopsis thaliana mRNA for putative cyclin-dependent kinase
regulatory subunit, complete cds, clone: RAFL22-26-H24
Length = 506
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 71 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 130
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 131 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 190
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 191 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 250
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 251 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 304
>dbj|AK175828.1| Arabidopsis thaliana mRNA for putative cyclin-dependent kinase
regulatory subunit, complete cds, clone: RAFL22-43-J08
Length = 538
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 85 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 144
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 145 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 204
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 205 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 264
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 265 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 318
>dbj|AK176119.1| Arabidopsis thaliana mRNA for putative cyclin-dependent kinase
regulatory subunit, complete cds, clone: RAFL22-91-I22
Length = 506
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 71 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 130
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 131 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 190
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 191 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 250
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 251 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 304
>emb|AJ000016.1|ATCKS1SUC Arabidopsis thaliana mRNA for Cks1/Suc1 protein homologue
Length = 455
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 16 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 75
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 76 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 135
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 136 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 195
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 196 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 249
>ref|NM_128355.1| Arabidopsis thaliana CKS1; cyclin-dependent protein kinase
AT2G27960 (CKS1) mRNA, complete cds
Length = 524
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 84 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 143
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 144 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 203
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| |||||||| ||||| || |||||| | || || ||
Sbjct: 204 tggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttcatcgacct 263
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 264 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 317
>gb|BP839263.1|BP839263 BP839263 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-26-H24 5',
mRNA sequence
Length = 375
Score = 115 bits (58), Expect = 1e-023
Identities = 190/234 (81%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 70 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 129
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 130 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 189
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||| | ||||| ||||||||||| ||||| || ||||| || |||||| | || || ||
Sbjct: 190 tggggagcgataggagtgcagcaaagccggggatgggtacattacgcggttcatcgacct 249
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 250 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 303
>gb|BP816969.1|BP816969 BP816969 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-43-J08 5',
mRNA sequence
Length = 426
Score = 107 bits (54), Expect = 3e-021
Identities = 189/234 (80%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| ||||| || ||||| | ||| ||||||||||||
Sbjct: 84 atgggtcagatccaatactccgagaaatacttggatgacactttcgaatacaggcacgtc 143
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || || ||||| || || || || ||||| || || |||||||| |||||
Sbjct: 144 gttcttcctcctgaagtcgctaaacttcttccaaagaatcgtcttctctccgaaaacgaa 203
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||| ||||| ||||||||||| ||||| || ||||| || |||||| | | || ||
Sbjct: 204 tggcgagcgataggagtgcagcaaagccggggatgggtacattacgcggttaatcgacct 263
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggag 331
||||||||||| ||||| ||| | | || | ||||| |||||||||||||||
Sbjct: 264 gagccgcacataatgctattcaggaggcctcttaactatcagcagcagcaggag 317
>gb|R87032.1|R87032 16228 Lambda-PRL2 Arabidopsis thaliana cDNA clone 119K19T7, mRNA
sequence
Length = 308
Score = 77.8 bits (39), Expect = 3e-012
Identities = 149/188 (79%)
Strand = Plus / Plus
Query: 101 ggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtcgtc 160
||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||||
Sbjct: 59 ggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtcgtt 118
Query: 161 ctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgagtgg 220
| || || || ||||| || || | || ||||| || | || |||| ||||| |||
Sbjct: 119 tttcctcctgaagtcgctaaacttnttccaaagaatcgtnttntcnccgaaaacgaatgg 178
Query: 221 cgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccggag 280
|| ||||| || || ||||| |||||||| ||||| || |||||| | || || || |||
Sbjct: 179 cgagcgataggngtncagcaaagccgcggatgggtacattacgcggttcatcgaccngag 238
Query: 281 ccgcacat 288
||||||||
Sbjct: 239 ccgcacat 246
>emb|BX821107.1|CNS0AA39 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL16ZB01 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 567
Score = 75.8 bits (38), Expect = 1e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 30 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacaggcacgtc 89
Query: 158 gt 159
||
Sbjct: 90 gt 91
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 238 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 297
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 298 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 357
Query: 330 ag 331
||
Sbjct: 358 ag 359
>emb|AL759472.1| Arabidopsis thaliana T-DNA flanking sequence GK-187E10-014619,
genomic survey sequence
Length = 477
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 50 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 109
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 110 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 169
Query: 330 ag 331
||
Sbjct: 170 ag 171
>emb|AL759473.1| Arabidopsis thaliana T-DNA flanking sequence GK-187E10-014623,
genomic survey sequence
Length = 398
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 50 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 109
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 110 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 169
Query: 330 ag 331
||
Sbjct: 170 ag 171
>emb|A85208.1| Sequence 2 from Patent WO9841642
Length = 696
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 490 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 549
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 550 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 609
Query: 330 ag 331
||
Sbjct: 610 ag 611
Score = 60.0 bits (30), Expect = 6e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||
Sbjct: 1 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacagg 54
>dbj|BD057885.1| Method and means for modulating plant cell cycle proteins and their
use in plant cell growth control
Length = 696
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 490 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 549
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 550 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 609
Query: 330 ag 331
||
Sbjct: 610 ag 611
Score = 60.0 bits (30), Expect = 6e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||
Sbjct: 1 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacagg 54
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete
sequence
Length = 94884
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 49966 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 50025
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 50026 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 50085
Query: 330 ag 331
||
Sbjct: 50086 ag 50087
Score = 60.0 bits (30), Expect = 6e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||
Sbjct: 49477 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacagg 49530
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccga 120
|||||||||||||||||||||||
Sbjct: 47908 atgggtcagatccagtactccga 47930
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 67.9 bits (34), Expect = 2e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||| | |
Sbjct: 11918131 agaacgaatggcgagcgataggagtgcagcaaagccgcggatgggtacattacgcggttc 11918072
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
| || || ||||||||||| ||||| ||| | | || | ||||| |||||||||||||
Sbjct: 11918071 atcgacctgagccgcacataatgctattcaggaggcctcttaactatcagcagcagcagg 11918012
Query: 330 ag 331
||
Sbjct: 11918011 ag 11918010
Score = 60.0 bits (30), Expect = 6e-007
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
|||||||||||||| ||||||||||| |||||||| ||||| | ||| ||||||
Sbjct: 11918620 atgggtcagatccaatactccgagaaatacttcgatgacactttcgaatacagg 11918567
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 98 atgggtcagatccagtactccga 120
|||||||||||||||||||||||
Sbjct: 11920189 atgggtcagatccagtactccga 11920167
>gb|BP832130.1|BP832130 BP832130 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-91-I22 5',
mRNA sequence
Length = 402
Score = 61.9 bits (31), Expect = 2e-007
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgag-aagtacttcgacgacacctacgagtacaggcacgt 156
|||||||||||||| ||||||||| || |||||||| ||||| | ||| |||||||||||
Sbjct: 70 atgggtcagatccaatactccgagaaaatacttcgatgacactttcgaatacaggcacgt 129
Query: 157 cgt 159
|||
Sbjct: 130 cgt 132
>gb|AV553882.1|AV553882 AV553882 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ75c04R 5', mRNA sequence
Length = 510
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgt 156
||||||||||||||||||||||| || || ||||| || || | ||| |||||||||||
Sbjct: 48 atgggtcagatccagtactccgacaaatatttcgatgatactttcgaatacaggcacgt 106
>emb|AX506519.1| Sequence 1214 from Patent WO0216655
Length = 252
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgt 156
||||||||||||||||||||||| || || ||||| || || | ||| |||||||||||
Sbjct: 1 atgggtcagatccagtactccgacaaatatttcgatgatactttcgaatacaggcacgt 59
>gb|BT010784.1| Arabidopsis thaliana At2g27970 mRNA, complete cds
Length = 368
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgt 156
||||||||||||||||||||||| || || ||||| || || | ||| |||||||||||
Sbjct: 31 atgggtcagatccagtactccgacaaatatttcgatgatactttcgaatacaggcacgt 89
>gb|BT011257.1| Arabidopsis thaliana At2g27970 gene, complete cds
Length = 252
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgt 156
||||||||||||||||||||||| || || ||||| || || | ||| |||||||||||
Sbjct: 1 atgggtcagatccagtactccgacaaatatttcgatgatactttcgaatacaggcacgt 59
>emb|BX819045.1|CNS0AAEG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB3ZC08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 532
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgt 156
||||||||||||||||||||||| || || ||||| || || | ||| |||||||||||
Sbjct: 39 atgggtcagatccagtactccgacaaatatttcgatgatactttcgaatacaggcacgt 97
>ref|NM_128356.4| Arabidopsis thaliana CKS2; cyclin-dependent protein kinase
AT2G27970 (CKS2) mRNA, complete cds
Length = 541
Score = 54.0 bits (27), Expect = 4e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgt 156
||||||||||||||||||||||| || || ||||| || || | ||| |||||||||||
Sbjct: 48 atgggtcagatccagtactccgacaaatatttcgatgatactttcgaatacaggcacgt 106
>gb|BH618263.1|BH618263 SALK_038810 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_038810, DNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccga 120
|||||||||||||||||||||||
Sbjct: 190 atgggtcagatccagtactccga 212
>gb|BH618264.1|BH618264 SALK_038811 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_038811, DNA sequence
Length = 391
Score = 46.1 bits (23), Expect = 0.009
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccga 120
|||||||||||||||||||||||
Sbjct: 149 atgggtcagatccagtactccga 171
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 297,469
Number of Sequences: 1013581
Number of extensions: 297469
Number of successful extensions: 22725
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22545
Number of HSP's gapped (non-prelim): 178
length of query: 779
length of database: 908,940,872
effective HSP length: 20
effective length of query: 759
effective length of database: 888,669,252
effective search space: 674499962268
effective search space used: 674499962268
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)