BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921718.2.1
(649 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV817192.1|AV817192 AV817192 RAFL9 Arabidopsis thaliana ... 66 8e-009
gb|AV794725.1|AV794725 AV794725 RAFL8 Arabidopsis thaliana ... 58 2e-006
gb|AV795522.1|AV795522 AV795522 RAFL8 Arabidopsis thaliana ... 58 2e-006
gb|AV530852.1|AV530852 AV530852 Arabidopsis thaliana flower... 58 2e-006
gb|AV541661.1|AV541661 AV541661 Arabidopsis thaliana roots ... 58 2e-006
gb|AV563216.1|AV563216 AV563216 Arabidopsis thaliana green ... 58 2e-006
gb|AV565595.1|AV565595 AV565595 Arabidopsis thaliana green ... 58 2e-006
gb|AV566301.1|AV566301 AV566301 Arabidopsis thaliana green ... 58 2e-006
gb|CK120588.1|CK120588 207b24.p1 AtM1 Arabidopsis thaliana ... 58 2e-006
gb|BP572649.1|BP572649 BP572649 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|BP585910.1|BP585910 BP585910 RAFL15 Arabidopsis thaliana... 58 2e-006
gb|BP588612.1|BP588612 BP588612 RAFL15 Arabidopsis thaliana... 58 2e-006
gb|BP591105.1|BP591105 BP591105 RAFL15 Arabidopsis thaliana... 58 2e-006
gb|CB252667.1|CB252667 20-E010931-019-003-G05-T7R MPIZ-ADIS... 58 2e-006
gb|CB253750.1|CB253750 89-E015391-019-006-A23-T7R MPIZ-ADIS... 58 2e-006
gb|BP781345.1|BP781345 BP781345 RAFL7 Arabidopsis thaliana ... 58 2e-006
gb|BP783001.1|BP783001 BP783001 RAFL7 Arabidopsis thaliana ... 58 2e-006
gb|AF076484.1|AF076484 Arabidopsis thaliana GDP-mannose pyr... 58 2e-006
gb|AF108660.1|AF108660 Arabidopsis thaliana CYT1 protein (c... 58 2e-006
emb|AJ275979.1|ATH275979 Arabidopsis thaliana gene for GDP-... 58 2e-006
gb|AY057541.1| Arabidopsis thaliana At2g39770/T5I7.7 mRNA, ... 58 2e-006
gb|AF428297.1|AF428297 Arabidopsis thaliana At2g39770/T5I7.... 58 2e-006
gb|AF361812.1| Arabidopsis thaliana At2g39770/T5I7.7 mRNA, ... 58 2e-006
gb|AY133643.1| Arabidopsis thaliana At2g39770/T5I7.7 mRNA, ... 58 2e-006
gb|BT000697.1| Arabidopsis thaliana clone RAFL08-14-D02 (R1... 58 2e-006
gb|AY087698.1| Arabidopsis thaliana clone 37775 mRNA, compl... 58 2e-006
gb|BT006365.1| Arabidopsis thaliana At2g39770/T5I7.7 gene, ... 58 2e-006
dbj|BD248368.1| Gene participating in tolerance against env... 58 2e-006
gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7... 58 2e-006
emb|BX819717.1|CNS0A8ID Arabidopsis thaliana Full-length cD... 58 2e-006
emb|CQ805052.1| Sequence 1463 from Patent WO2004035798 58 2e-006
ref|NM_129535.2| Arabidopsis thaliana CYT1 (CYTOKINESIS DEF... 58 2e-006
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 58 2e-006
gb|BP581460.1|BP581460 BP581460 RAFL14 Arabidopsis thaliana... 56 8e-006
gb|BP564831.1|BP564831 BP564831 RAFL14 Arabidopsis thaliana... 52 1e-004
gb|AV519100.1|AV519100 AV519100 Arabidopsis thaliana aboveg... 50 5e-004
gb|BP573196.1|BP573196 BP573196 RAFL14 Arabidopsis thaliana... 50 5e-004
gb|BP581993.1|BP581993 BP581993 RAFL14 Arabidopsis thaliana... 50 5e-004
gb|BP587164.1|BP587164 BP587164 RAFL15 Arabidopsis thaliana... 50 5e-004
gb|BP618668.1|BP618668 BP618668 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|BP639202.1|BP639202 BP639202 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|BP779750.1|BP779750 BP779750 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|BP788478.1|BP788478 BP788478 RAFL7 Arabidopsis thaliana ... 50 5e-004
gb|BP657338.1|BP657338 BP657338 RAFL19 Arabidopsis thaliana... 48 0.002
gb|BP573056.1|BP573056 BP573056 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP568511.1|BP568511 BP568511 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP580817.1|BP580817 BP580817 RAFL14 Arabidopsis thaliana... 44 0.030
gb|BP626637.1|BP626637 BP626637 RAFL17 Arabidopsis thaliana... 44 0.030
gb|BH610347.1|BH610347 SALK_008760 Arabidopsis thaliana TDN... 42 0.12
gb|AV802567.1|AV802567 AV802567 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|AV538851.1|AV538851 AV538851 Arabidopsis thaliana roots ... 42 0.12
gb|BP624153.1|BP624153 BP624153 RAFL17 Arabidopsis thaliana... 42 0.12
gb|BP657787.1|BP657787 BP657787 RAFL19 Arabidopsis thaliana... 42 0.12
emb|AX059513.1| Sequence 246 from Patent WO0055325 42 0.12
gb|AC006217.4| Arabidopsis thaliana chromosome 2 clone T13E... 42 0.12
gb|F14223.1|F14223 ATTS5145 Ors-B Arabidopsis thaliana cDNA... 40 0.46
gb|AV805852.1|AV805852 AV805852 RAFL9 Arabidopsis thaliana ... 40 0.46
gb|AV811720.1|AV811720 AV811720 RAFL9 Arabidopsis thaliana ... 40 0.46
gb|AV439931.1|AV439931 AV439931 Arabidopsis thaliana above-... 40 0.46
gb|AV519608.1|AV519608 AV519608 Arabidopsis thaliana aboveg... 40 0.46
gb|BP569139.1|BP569139 BP569139 RAFL14 Arabidopsis thaliana... 40 0.46
gb|BP572177.1|BP572177 BP572177 RAFL14 Arabidopsis thaliana... 40 0.46
gb|BP577545.1|BP577545 BP577545 RAFL14 Arabidopsis thaliana... 40 0.46
gb|BP584220.1|BP584220 BP584220 RAFL14 Arabidopsis thaliana... 40 0.46
gb|BP627553.1|BP627553 BP627553 RAFL17 Arabidopsis thaliana... 40 0.46
gb|BP633012.1|BP633012 BP633012 RAFL17 Arabidopsis thaliana... 40 0.46
gb|BP637445.1|BP637445 BP637445 RAFL19 Arabidopsis thaliana... 40 0.46
gb|BP655371.1|BP655371 BP655371 RAFL19 Arabidopsis thaliana... 40 0.46
gb|BP663248.1|BP663248 BP663248 RAFL21 Arabidopsis thaliana... 40 0.46
emb|AX509053.1| Sequence 3748 from Patent WO0216655 40 0.46
gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F... 40 0.46
gb|AC006527.5| Arabidopsis thaliana chromosome 2 clone F27C... 40 0.46
>gb|AV817192.1|AV817192 AV817192 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-93-I03 3',
mRNA sequence
Length = 401
Score = 65.9 bits (33), Expect = 8e-009
Identities = 102/125 (81%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 328 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 269
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||||| |||| | ||||| ||||| || |
Sbjct: 268 gaggagttgttttgccacacaaggagatcaaatccaacatcttgaagccagagatagtga 209
Query: 369 tgtga 373
|||||
Sbjct: 208 tgtga 204
>gb|AV794725.1|AV794725 AV794725 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-14-D02 3',
mRNA sequence
Length = 445
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 310 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 251
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 250 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 191
Query: 369 tgtga 373
|||||
Sbjct: 190 tgtga 186
>gb|AV795522.1|AV795522 AV795522 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-17-P21 3',
mRNA sequence
Length = 442
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 331 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 272
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 271 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 212
Query: 369 tgtga 373
|||||
Sbjct: 211 tgtga 207
>gb|AV530852.1|AV530852 AV530852 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB010d10F 3', mRNA sequence
Length = 337
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 299 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 240
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 239 gaggagttgttttgccacacaaggagatcaaatctaacatcttgaagccagagatagtga 180
Query: 369 tgtga 373
|||||
Sbjct: 179 tgtga 175
>gb|AV541661.1|AV541661 AV541661 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ169g10F 3', mRNA sequence
Length = 588
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 310 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 251
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 250 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 191
Query: 369 tgtga 373
|||||
Sbjct: 190 tgtga 186
>gb|AV563216.1|AV563216 AV563216 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ183c10F 3', mRNA sequence
Length = 551
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 314 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 255
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 254 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 195
Query: 369 tgtga 373
|||||
Sbjct: 194 tgtga 190
>gb|AV565595.1|AV565595 AV565595 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ227c01F 3', mRNA sequence
Length = 428
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 341 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 282
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 281 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 222
Query: 369 tgtga 373
|||||
Sbjct: 221 tgtga 217
>gb|AV566301.1|AV566301 AV566301 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ240h07F 3', mRNA sequence
Length = 390
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 330 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 271
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 270 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 211
Query: 369 tgtga 373
|||||
Sbjct: 210 tgtga 206
>gb|CK120588.1|CK120588 207b24.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B24207
5-PRIME, mRNA sequence
Length = 635
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 301 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 360
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 361 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 420
Query: 369 tgtga 373
|||||
Sbjct: 421 tgtga 425
>gb|BP572649.1|BP572649 BP572649 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-80-N14 3',
mRNA sequence
Length = 432
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 215 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 156
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 155 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 96
Query: 369 tgtga 373
|||||
Sbjct: 95 tgtga 91
>gb|BP585910.1|BP585910 BP585910 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-04-F14 3',
mRNA sequence
Length = 456
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 309 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 250
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 249 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 190
Query: 369 tgtga 373
|||||
Sbjct: 189 tgtga 185
>gb|BP588612.1|BP588612 BP588612 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-46-O04 3',
mRNA sequence
Length = 407
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 319 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 260
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 259 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 200
Query: 369 tgtga 373
|||||
Sbjct: 199 tgtga 195
>gb|BP591105.1|BP591105 BP591105 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-13-G22 3',
mRNA sequence
Length = 429
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 336 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 277
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 276 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 217
Query: 369 tgtga 373
|||||
Sbjct: 216 tgtga 212
>gb|CB252667.1|CB252667 20-E010931-019-003-G05-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768G053Q 5-PRIME, mRNA sequence
Length = 520
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 364 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 423
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 424 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 483
Query: 369 tgtga 373
|||||
Sbjct: 484 tgtga 488
>gb|CB253750.1|CB253750 89-E015391-019-006-A23-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768A236Q 5-PRIME, mRNA sequence
Length = 450
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 151 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 210
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 211 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 270
Query: 369 tgtga 373
|||||
Sbjct: 271 tgtga 275
>gb|BP781345.1|BP781345 BP781345 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-77-M17 3',
mRNA sequence
Length = 381
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 330 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 271
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 270 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 211
Query: 369 tgtga 373
|||||
Sbjct: 210 tgtga 206
>gb|BP783001.1|BP783001 BP783001 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-84-F22 3',
mRNA sequence
Length = 387
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 334 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 275
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatc 349
| || || || | || ||||||||||||||||||| ||||
Sbjct: 274 gaggagttgttttgccacacaaggagatcaaatccaacatc 234
>gb|AF076484.1|AF076484 Arabidopsis thaliana GDP-mannose pyrophosphorylase (GMP1) mRNA,
complete cds
Length = 1490
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1114 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1173
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1174 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1233
Query: 369 tgtga 373
|||||
Sbjct: 1234 tgtga 1238
>gb|AF108660.1|AF108660 Arabidopsis thaliana CYT1 protein (cyt1) mRNA, complete cds
Length = 1477
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1112 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1171
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1172 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1231
Query: 369 tgtga 373
|||||
Sbjct: 1232 tgtga 1236
>emb|AJ275979.1|ATH275979 Arabidopsis thaliana gene for GDP-mannose pyrophosphorylase, gene for
vacuolar ribonuclease and gene for proline byosinthesis
codifying enzyme
Length = 9423
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 2646 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 2705
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 2706 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 2765
Query: 369 tgtga 373
|||||
Sbjct: 2766 tgtga 2770
>gb|AY057541.1| Arabidopsis thaliana At2g39770/T5I7.7 mRNA, complete cds
Length = 1482
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1120 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1179
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1180 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1239
Query: 369 tgtga 373
|||||
Sbjct: 1240 tgtga 1244
>gb|AF428297.1|AF428297 Arabidopsis thaliana At2g39770/T5I7.7 mRNA, complete cds
Length = 1440
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1120 tcgagaacatgactatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1179
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1180 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1239
Query: 369 tgtga 373
|||||
Sbjct: 1240 tgtga 1244
>gb|AF361812.1| Arabidopsis thaliana At2g39770/T5I7.7 mRNA, complete cds
Length = 1450
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1120 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1179
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1180 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1239
Query: 369 tgtga 373
|||||
Sbjct: 1240 tgtga 1244
>gb|AY133643.1| Arabidopsis thaliana At2g39770/T5I7.7 mRNA, complete cds
Length = 1086
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 962 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1021
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1022 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1081
Query: 369 tgtga 373
|||||
Sbjct: 1082 tgtga 1086
>gb|BT000697.1| Arabidopsis thaliana clone RAFL08-14-D02 (R11125) putative
GDP-mannose pyrophosphorylase (At2g39770) mRNA, complete
cds
Length = 1444
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1120 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1179
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1180 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1239
Query: 369 tgtga 373
|||||
Sbjct: 1240 tgtga 1244
>gb|AY087698.1| Arabidopsis thaliana clone 37775 mRNA, complete sequence
Length = 1480
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1116 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1175
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1176 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1235
Query: 369 tgtga 373
|||||
Sbjct: 1236 tgtga 1240
>gb|BT006365.1| Arabidopsis thaliana At2g39770/T5I7.7 gene, complete cds
Length = 1086
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 962 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1021
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1022 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1081
Query: 369 tgtga 373
|||||
Sbjct: 1082 tgtga 1086
>dbj|BD248368.1| Gene participating in tolerance against environmental stress
Length = 1109
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 983 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1042
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1043 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1102
Query: 369 tgtga 373
|||||
Sbjct: 1103 tgtga 1107
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
sequence
Length = 92624
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 33150 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 33209
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 33210 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 33269
Query: 369 tgtga 373
|||||
Sbjct: 33270 tgtga 33274
>emb|BX819717.1|CNS0A8ID Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS1ZC08 of Adult vegetative tissue of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1343
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1059 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1118
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1119 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1178
Query: 369 tgtga 373
|||||
Sbjct: 1179 tgtga 1183
>emb|CQ805052.1| Sequence 1463 from Patent WO2004035798
Length = 1086
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 962 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1021
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1022 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1081
Query: 369 tgtga 373
|||||
Sbjct: 1082 tgtga 1086
>ref|NM_129535.2| Arabidopsis thaliana CYT1 (CYTOKINESIS DEFECTIVE 1);
nucleotidyltransferase AT2G39770 (CYT1) mRNA, complete
cds
Length = 1488
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 1120 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 1179
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 1180 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 1239
Query: 369 tgtga 373
|||||
Sbjct: 1240 tgtga 1244
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 58.0 bits (29), Expect = 2e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 16597695 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 16597754
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 16597755 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 16597814
Query: 369 tgtga 373
|||||
Sbjct: 16597815 tgtga 16597819
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 419 ttgcattgcattgcattgcat 439
|||||||||||||||||||||
Sbjct: 3095067 ttgcattgcattgcattgcat 3095087
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 418 cttgcattgcattgcattgc 437
||||||||||||||||||||
Sbjct: 14917997 cttgcattgcattgcattgc 14917978
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 419 ttgcattgcattgcattgca 438
||||||||||||||||||||
Sbjct: 3105753 ttgcattgcattgcattgca 3105772
>gb|BP581460.1|BP581460 BP581460 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-32-A14 3',
mRNA sequence
Length = 468
Score = 56.0 bits (28), Expect = 8e-006
Identities = 139/176 (78%)
Strand = Plus / Minus
Query: 198 tctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaaca 257
|||| ||||| |||||||| |||||||| ||||| || | ||||| | |||||||||
Sbjct: 364 tctcgagcagtatcatcgggtggcactcaaccgttggtcaatgggccaggatcgagaaca 305
Query: 258 tgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacggcggcgtcg 317
|||| |||||||| ||||| || || || |||| |||||||| ||||| || || ||
Sbjct: 304 tgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatggaggagttt 245
Query: 318 tgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtcatgtga 373
| | || ||||||||||||||||| | |||| | ||||| ||||| || ||||||
Sbjct: 244 ttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtgatgtga 189
>gb|BP564831.1|BP564831 BP564831 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-09-J11 3',
mRNA sequence
Length = 446
Score = 52.0 bits (26), Expect = 1e-004
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 364 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 305
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatc 342
| || || || | || |||||||||||||||||
Sbjct: 304 gaggagttgttttgccacacaaggagatcaaatc 271
>gb|AV519100.1|AV519100 AV519100 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD48c11F 3', mRNA
sequence
Length = 461
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 223 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 164
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || | ||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 163 gaggagttgttttgccacccaaggagatcaaatcaaacatcttgaagccagagatagtga 104
Query: 369 tgtga 373
|||||
Sbjct: 103 tgtga 99
>gb|BP573196.1|BP573196 BP573196 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-83-F06 3',
mRNA sequence
Length = 436
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 309 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 250
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || | | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 249 gaggagtttttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 190
Query: 369 tgtga 373
|||||
Sbjct: 189 tgtga 185
>gb|BP581993.1|BP581993 BP581993 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-34-F08 3',
mRNA sequence
Length = 468
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| | ||| |
Sbjct: 214 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctataccaatg 155
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 154 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 95
Query: 369 tgtga 373
|||||
Sbjct: 94 tgtga 90
>gb|BP587164.1|BP587164 BP587164 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-41-G23 3',
mRNA sequence
Length = 434
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||||| |
Sbjct: 321 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaatg 262
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || |||||||||||| |||| | |||| | ||||| ||||| || |
Sbjct: 261 gaggagttgttttgccacacaaggagatccaatcaaacatcttgaagccagagatagtga 202
Query: 369 tgtga 373
|||||
Sbjct: 201 tgtga 197
>gb|BP618668.1|BP618668 BP618668 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-29-D16 3',
mRNA sequence
Length = 447
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||| | || || || |||| |||||||| ||||| |
Sbjct: 305 tcgagaacatgacgatcctcggtgagaatgttcatgtgagcgatgagatctatagcaatg 246
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 245 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 186
Query: 369 tgtga 373
|||||
Sbjct: 185 tgtga 181
>gb|BP639202.1|BP639202 BP639202 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-46-O10 3',
mRNA sequence
Length = 413
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| |||||||| ||| | |
Sbjct: 228 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagccatg 169
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 168 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 109
Query: 369 tgtga 373
|||||
Sbjct: 108 tgtga 104
>gb|BP779750.1|BP779750 BP779750 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-69-H05 3',
mRNA sequence
Length = 376
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || | |||| |||||||| ||||| |
Sbjct: 367 tcgagaacatgacgatcctcggtgaggatgttcatttgagcgatgagatctatagcaatg 308
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 307 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 248
Query: 369 tgtga 373
|||||
Sbjct: 247 tgtga 243
>gb|BP788478.1|BP788478 BP788478 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-34-A01 3',
mRNA sequence
Length = 401
Score = 50.1 bits (25), Expect = 5e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||||| || || || |||| ||||||| ||||| |
Sbjct: 345 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgattagatctatagcaatg 286
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 285 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 226
Query: 369 tgtga 373
|||||
Sbjct: 225 tgtga 221
>gb|BP657338.1|BP657338 BP657338 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-30-O11 3',
mRNA sequence
Length = 427
Score = 48.1 bits (24), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 209 atcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaacatgaccatcctc 268
|||||||| |||||||||||||| || | ||||| | ||||||||||||| ||||||
Sbjct: 352 atcatcgggtggcactccaccgttggtcaatgggccaggatcgagaacatgacgatcctc 293
Query: 269 ggcgagga 276
|| |||||
Sbjct: 292 ggtgagga 285
>gb|BP573056.1|BP573056 BP573056 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-82-L13 3',
mRNA sequence
Length = 459
Score = 46.1 bits (23), Expect = 0.007
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 198 tctccagcagcatcatcggctggcactccaccgtcggcaagtgggcgcgcgtcgagaaca 257
|||| ||||| |||||||| ||||||||||| || || | ||||| | |||||||||
Sbjct: 360 tctcgagcagtatcatcgggtggcactccacggttggtcaatgggccaggatcgagaaca 301
Query: 258 tgaccatcctcggcgagga 276
|||| |||||||| |||||
Sbjct: 300 tgacgatcctcggtgagga 282
>gb|BP568511.1|BP568511 BP568511 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-62-G22 3',
mRNA sequence
Length = 430
Score = 44.1 bits (22), Expect = 0.030
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaa 306
||||||||||||| |||||||| ||||| || || || |||| |||||||| |||||
Sbjct: 211 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctatagcaa 154
>gb|BP580817.1|BP580817 BP580817 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-29-D19 3',
mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.030
Identities = 101/126 (80%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctaca-gcaac 307
||||||||||||| |||||||| ||||| || || || |||| |||||||| | ||||
Sbjct: 315 tcgagaacatgacgatcctcggtgaggatgttcatgtgagcgatgagatctataggcaat 256
Query: 308 ggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtc 367
|| || || || | || ||||||||||||||||| | |||| | ||||| ||||| ||
Sbjct: 255 ggaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtg 196
Query: 368 atgtga 373
||||||
Sbjct: 195 atgtga 190
>gb|BP626637.1|BP626637 BP626637 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-48-F15 3',
mRNA sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.030
Identities = 152/194 (78%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 180 tcaagcagcacgcctgcgtctccagcagcatcatcggctggcactccaccgtcggcaagt 239
||||| |||| ||||| |||| ||||| |||||||| ||||||||||| || || | |
Sbjct: 410 tcaagaagcatgcctgtatctcgagcagtatcatcgggtggcactccacggttggtcaat 351
Query: 240 gggcgcgcgtcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatct 299
|||| | ||||| ||||||| |||||||| ||||| || || || |||| |||||||
Sbjct: 350 gggccaggatcgag-acatgacgatcctcggtgaggatgttcatgtgagcgatgagatct 292
Query: 300 acagcaacggcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccg 359
| ||| | || || || || | || |||||||||||| |||||| |||| | ||||| |
Sbjct: 291 atagccatggaggagttgtttttccacacaaggagatccaatccaacatcttgaagccag 232
Query: 360 agatcgtcatgtga 373
|||| || ||||||
Sbjct: 231 agatagtgatgtga 218
>gb|BH610347.1|BH610347 SALK_008760 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_008760, DNA sequence
Length = 359
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 419 ttgcattgcattgcattgcat 439
|||||||||||||||||||||
Sbjct: 336 ttgcattgcattgcattgcat 356
>gb|AV802567.1|AV802567 AV802567 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-32-G08 3',
mRNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.12
Identities = 100/125 (80%), Gaps = 1/125 (0%)
Strand = Plus / Minus
Query: 249 tcgagaacatgaccatcctcggcgaggacgtccacgtctgcgacgagatctacagcaacg 308
||||||||||||| |||||||| ||| | || || || |||| |||||||| ||||| |
Sbjct: 271 tcgagaacatgacgatcctcggtgag-atgttcatgtgagcgatgagatctatagcaatg 213
Query: 309 gcggcgtcgtgctcccgcacaaggagatcaaatccagcatcctcaagcccgagatcgtca 368
| || || || | || ||||||||||||||||| | |||| | ||||| ||||| || |
Sbjct: 212 gaggagttgttttgccacacaaggagatcaaatcaaacatcttgaagccagagatagtga 153
Query: 369 tgtga 373
|||||
Sbjct: 152 tgtga 148
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 262,963
Number of Sequences: 1013581
Number of extensions: 262963
Number of successful extensions: 20895
Number of sequences better than 0.5: 72
Number of HSP's better than 0.5 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20435
Number of HSP's gapped (non-prelim): 407
length of query: 649
length of database: 908,940,872
effective HSP length: 20
effective length of query: 629
effective length of database: 888,669,252
effective search space: 558972959508
effective search space used: 558972959508
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)