BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 54 4e-005
gb|AY092999.1| Arabidopsis thaliana beta-glucosidase-like p... 54 4e-005
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 54 4e-005
ref|NM_122103.3| Arabidopsis thaliana hydrolase, hydrolyzin... 54 4e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 54 4e-005
gb|BE662836.1|BE662836 EST00589 Arabidopsis Chronic Ozone F... 48 0.003
gb|CK121760.1|CK121760 201b14.p1 AtM1 Arabidopsis thaliana ... 48 0.003
gb|AF462808.1|AF462808 Arabidopsis thaliana beta-D-glucan e... 48 0.003
gb|AY091027.1| Arabidopsis thaliana putative beta-D-glucan ... 48 0.003
gb|AY142679.1| Arabidopsis thaliana putative beta-D-glucan ... 48 0.003
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 48 0.003
emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome... 48 0.003
ref|NM_180717.1| Arabidopsis thaliana hydrolase, hydrolyzin... 48 0.003
ref|NM_122104.3| Arabidopsis thaliana hydrolase, hydrolyzin... 48 0.003
ref|NM_114572.2| Arabidopsis thaliana hydrolase, hydrolyzin... 48 0.003
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 48 0.003
emb|BX000552.1| Arabidopsis thaliana transposon insertion S... 44 0.041
emb|BX830026.1|CNS0A1C4 Arabidopsis thaliana Full-length cD... 44 0.041
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1
Length = 96102
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgc 667
||||||||||||||||| ||||| | | ||||||||||||||||||
Sbjct: 48464 gtccagccaccacattggtatcccaagttatcagcatgtgttcctgc 48510
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 51982 gtccagccaccacattgatatcccaagttatcagcatgtg 52021
>gb|AY092999.1| Arabidopsis thaliana beta-glucosidase-like protein (At5g20940) mRNA,
complete cds
Length = 2078
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgc 667
||||||||||||||||| ||||| | | ||||||||||||||||||
Sbjct: 1415 gtccagccaccacattggtatcccaagttatcagcatgtgttcctgc 1369
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgc 667
||||||||||||||||| ||||| | | ||||||||||||||||||
Sbjct: 6817304 gtccagccaccacattggtatcccaagttatcagcatgtgttcctgc 6817350
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 6820822 gtccagccaccacattgatatcccaagttatcagcatgtg 6820861
>ref|NM_122103.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G20940 mRNA, complete cds
Length = 2078
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgc 667
||||||||||||||||| ||||| | | ||||||||||||||||||
Sbjct: 1415 gtccagccaccacattggtatcccaagttatcagcatgtgttcctgc 1369
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 54.0 bits (27), Expect = 4e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcctgc 667
||||||||||||||||| ||||| | | ||||||||||||||||||
Sbjct: 7104774 gtccagccaccacattggtatcccaagttatcagcatgtgttcctgc 7104820
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 7108292 gtccagccaccacattgatatcccaagttatcagcatgtg 7108331
>gb|BE662836.1|BE662836 EST00589 Arabidopsis Chronic Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtCOzJE10, mRNA sequence
Length = 377
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 44 gtccagccaccacattgatatcccaagttatcagcatgtg 83
>gb|CK121760.1|CK121760 201b14.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B14201
5-PRIME, mRNA sequence
Length = 814
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 127 gtccagccaccacattgatatcccaagttatcagcatgtg 88
>gb|AF462808.1|AF462808 Arabidopsis thaliana beta-D-glucan exohydrolase-like protein mRNA,
complete cds
Length = 2194
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 1487 gtccagccaccacattgatatcccaagttatcagcatgtg 1448
>gb|AY091027.1| Arabidopsis thaliana putative beta-D-glucan exohydrolase (At5g20950)
mRNA, complete cds
Length = 2220
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 1507 gtccagccaccacattgatatcccaagttatcagcatgtg 1468
>gb|AY142679.1| Arabidopsis thaliana putative beta-D-glucan exohydrolase (At5g20950)
mRNA, complete cds
Length = 1906
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 1349 gtccagccaccacattgatatcccaagttatcagcatgtg 1310
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcc 664
||||| ||||| ||||||||||||| |||||| ||||| |||||
Sbjct: 17292777 gtccatccaccgcattgatatccaagatcatctgcatgcgttcc 17292820
>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12
Length = 140680
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcc 664
||||| ||||| ||||||||||||| |||||| ||||| |||||
Sbjct: 46158 gtccatccaccgcattgatatccaagatcatctgcatgcgttcc 46201
>ref|NM_180717.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G20950 transcript variant AT5G20950.1 mRNA, complete
cds
Length = 2247
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 1488 gtccagccaccacattgatatcccaagttatcagcatgtg 1449
>ref|NM_122104.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G20950 transcript variant AT5G20950.2 mRNA, complete
cds
Length = 2266
Score = 48.1 bits (24), Expect = 0.003
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtg 660
||||||||||||||||||||||| | | |||||||||||
Sbjct: 1507 gtccagccaccacattgatatcccaagttatcagcatgtg 1468
>ref|NM_114572.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT3G47050 mRNA, complete cds
Length = 1928
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcc 664
||||| ||||| ||||||||||||| |||||| ||||| |||||
Sbjct: 1330 gtccatccaccgcattgatatccaagatcatctgcatgcgttcc 1287
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 48.1 bits (24), Expect = 0.003
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 621 gtccagccaccacattgatatccaatatcatcagcatgtgttcc 664
||||| ||||| ||||||||||||| |||||| ||||| |||||
Sbjct: 17339715 gtccatccaccgcattgatatccaagatcatctgcatgcgttcc 17339758
>emb|BX000552.1| Arabidopsis thaliana transposon insertion STS SM_3.32683, sequence
tagged site
Length = 181
Score = 44.1 bits (22), Expect = 0.041
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 627 ccaccacattgatatccaatatcatcagcatgtgttcc 664
||||| ||||||||||||| |||||| ||||| |||||
Sbjct: 32 ccaccgcattgatatccaagatcatctgcatgcgttcc 69
>emb|BX830026.1|CNS0A1C4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB54ZB07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1734
Score = 44.1 bits (22), Expect = 0.041
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 622 tccagccaccacattgatatccaatatcatcagcatgtgttcctgc 667
|||||||||||||||| ||||| | | |||||||||| |||||||
Sbjct: 1328 tccagccaccacattggtatcccaagttatcagcatgttttcctgc 1283
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 456,021
Number of Sequences: 1013581
Number of extensions: 456021
Number of successful extensions: 34010
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33154
Number of HSP's gapped (non-prelim): 856
length of query: 885
length of database: 908,940,872
effective HSP length: 20
effective length of query: 865
effective length of database: 888,669,252
effective search space: 768698902980
effective search space used: 768698902980
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)