BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2763121.2.1
(1190 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW841881.1|CW841881 ET11708.Ds5.04.09.2003.jw91.261 Arab... 50 9e-004
gb|AV826295.1|AV826295 AV826295 RAFL8 Arabidopsis thaliana ... 50 9e-004
gb|AU236531.1|AU236531 AU236531 RAFL15 Arabidopsis thaliana... 50 9e-004
emb|X99952.1|ATPATPA2A A.thaliana mRNA for peroxidase ATPA2 50 9e-004
dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol ... 50 9e-004
gb|AY056186.1| Arabidopsis thaliana putative peroxidase (At... 50 9e-004
gb|AY096713.1| Arabidopsis thaliana putative peroxidase (At... 50 9e-004
emb|AX507019.1| Sequence 1714 from Patent WO0216655 50 9e-004
emb|AX651264.1| Sequence 48 from Patent WO03000898 50 9e-004
gb|AY086626.1| Arabidopsis thaliana clone 26375 mRNA, compl... 50 9e-004
gb|AY087674.1| Arabidopsis thaliana clone 37564 mRNA, compl... 50 9e-004
gb|BT008612.1| Arabidopsis thaliana clone RAFL15-07-B13 (R2... 50 9e-004
dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosom... 50 9e-004
gb|AY519359.1| Arabidopsis thaliana peroxidase ATPA2 gene, ... 50 9e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 9e-004
emb|X98804.1|ATATP418A A.thaliana mRNA for peroxidase ATP18a 50 9e-004
ref|NM_103577.1| Arabidopsis thaliana peroxidase AT1G44970 ... 50 9e-004
ref|NM_120755.1| Arabidopsis thaliana peroxidase AT5G06720 ... 50 9e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 9e-004
emb|AL093888.1|CNS00WPU Arabidopsis thaliana genome survey ... 42 0.22
gb|AV539015.1|AV539015 AV539015 Arabidopsis thaliana roots ... 42 0.22
gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, compl... 42 0.22
gb|AY088113.1| Arabidopsis thaliana clone 41446 mRNA, compl... 42 0.22
gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsi... 42 0.22
gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis tha... 42 0.22
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.22
ref|NM_111238.1| Arabidopsis thaliana peroxidase AT3G03670 ... 42 0.22
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.22
>gb|CW841881.1|CW841881 ET11708.Ds5.04.09.2003.jw91.261 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET11708, DNA sequence
Length = 261
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 214 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 166
>gb|AV826295.1|AV826295 AV826295 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-12-E19 5',
mRNA sequence
Length = 591
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 415 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 463
>gb|AU236531.1|AU236531 AU236531 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-07-B13 5',
mRNA sequence
Length = 644
Score = 50.1 bits (25), Expect = 9e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctg 216
|||||||||||||||||||| ||||||||
Sbjct: 272 cacttccacgactgcttcgttcagggctg 300
>emb|X99952.1|ATPATPA2A A.thaliana mRNA for peroxidase ATPA2
Length = 1212
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 387 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 435
>dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol 14-demethylase,
complete cds
Length = 1899
Score = 50.1 bits (25), Expect = 9e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 atccgaattcgcggccgcgtcgacg 25
|||||||||||||||||||||||||
Sbjct: 49 atccgaattcgcggccgcgtcgacg 73
>gb|AY056186.1| Arabidopsis thaliana putative peroxidase (At5g06720) mRNA, complete
cds
Length = 1233
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 414 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 462
>gb|AY096713.1| Arabidopsis thaliana putative peroxidase (At5g06720) mRNA, complete
cds
Length = 1039
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 339 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 387
>emb|AX507019.1| Sequence 1714 from Patent WO0216655
Length = 1008
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 339 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 387
>emb|AX651264.1| Sequence 48 from Patent WO03000898
Length = 1008
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 339 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 387
>gb|AY086626.1| Arabidopsis thaliana clone 26375 mRNA, complete sequence
Length = 1186
Score = 50.1 bits (25), Expect = 9e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctg 216
|||||||||||||||||||| ||||||||
Sbjct: 272 cacttccacgactgcttcgttcagggctg 300
>gb|AY087674.1| Arabidopsis thaliana clone 37564 mRNA, complete sequence
Length = 1294
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 487 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 535
>gb|BT008612.1| Arabidopsis thaliana clone RAFL15-07-B13 (R20733) putative
peroxidase (At1g44970) mRNA, complete cds
Length = 1202
Score = 50.1 bits (25), Expect = 9e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctg 216
|||||||||||||||||||| ||||||||
Sbjct: 272 cacttccacgactgcttcgttcagggctg 300
>dbj|AP002032.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPH15
Length = 71277
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 28673 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 28625
>gb|AY519359.1| Arabidopsis thaliana peroxidase ATPA2 gene, complete cds
Length = 1291
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 438 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 486
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 1917458 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 1917410
>emb|X98804.1|ATATP418A A.thaliana mRNA for peroxidase ATP18a
Length = 1193
Score = 50.1 bits (25), Expect = 9e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctg 216
|||||||||||||||||||| ||||||||
Sbjct: 259 cacttccacgactgcttcgttcagggctg 287
>ref|NM_103577.1| Arabidopsis thaliana peroxidase AT1G44970 mRNA, complete cds
Length = 1187
Score = 50.1 bits (25), Expect = 9e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagggctg 216
|||||||||||||||||||| ||||||||
Sbjct: 272 cacttccacgactgcttcgttcagggctg 300
>ref|NM_120755.1| Arabidopsis thaliana peroxidase AT5G06720 mRNA, complete cds
Length = 1294
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 487 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 535
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 9e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 319 caaggctgccctggaaagcgcctgccctggtgttgtctcctgcgctgac 367
|||| ||||||| |||| ||| ||||||||||||||||| ||| |||||
Sbjct: 2078421 caagactgccctcgaaaacgcttgccctggtgttgtctcttgctctgac 2078373
>emb|AL093888.1|CNS00WPU Arabidopsis thaliana genome survey sequence T7 end of BAC T12C22 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 188 cacttccacgactgcttcgtccagg 212
|||||||||||||||||||| ||||
Sbjct: 233 cacttccacgactgcttcgttcagg 209
>gb|AV539015.1|AV539015 AV539015 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ125f04F 3', mRNA sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtc 208
|||||||||||||||||||||
Sbjct: 212 cacttccacgactgcttcgtc 232
>gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, complete cds
Length = 974
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gaattcgcggccgcgtcgacg 25
|||||||||||||||||||||
Sbjct: 16 gaattcgcggccgcgtcgacg 36
>gb|AY088113.1| Arabidopsis thaliana clone 41446 mRNA, complete sequence
Length = 1124
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 194 cacgactgcttcgtccagggctgcgacgc 222
|||||||| || |||||||||||||||||
Sbjct: 215 cacgactgttttgtccagggctgcgacgc 243
>gb|AC020576.2|T12C22 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 115421
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagg 212
|||||||||||||||||||| ||||
Sbjct: 115183 cacttccacgactgcttcgttcagg 115207
>gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis thaliana BAC F27F5 from chromosome I,
complete sequence
Length = 137336
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagg 212
|||||||||||||||||||| ||||
Sbjct: 28443 cacttccacgactgcttcgttcagg 28467
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagg 212
|||||||||||||||||||| ||||
Sbjct: 1418554 cacttccacgactgcttcgttcagg 1418578
>ref|NM_111238.1| Arabidopsis thaliana peroxidase AT3G03670 mRNA, complete cds
Length = 1124
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 194 cacgactgcttcgtccagggctgcgacgc 222
|||||||| || |||||||||||||||||
Sbjct: 215 cacgactgttttgtccagggctgcgacgc 243
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 188 cacttccacgactgcttcgtccagg 212
|||||||||||||||||||| ||||
Sbjct: 17004923 cacttccacgactgcttcgttcagg 17004947
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 330,609
Number of Sequences: 1013581
Number of extensions: 330609
Number of successful extensions: 24054
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23491
Number of HSP's gapped (non-prelim): 563
length of query: 1190
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1170
effective length of database: 888,669,252
effective search space: 1039743024840
effective search space used: 1039743024840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)