BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10... 131 3e-028
gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R1... 131 3e-028
gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA... 131 3e-028
gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5... 131 3e-028
dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding ... 131 3e-028
dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding ... 131 3e-028
dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding ... 131 3e-028
dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding ... 131 3e-028
dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding ... 131 3e-028
dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding ... 131 3e-028
emb|CS165494.1| Sequence 2 from Patent WO2005085453 131 3e-028
emb|CS165497.1| Sequence 5 from Patent WO2005085453 131 3e-028
emb|CS165547.1| Sequence 55 from Patent WO2005085453 131 3e-028
emb|CS165548.1| Sequence 56 from Patent WO2005085453 131 3e-028
ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 131 3e-028
ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 131 3e-028
ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 131 3e-028
dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosom... 80 9e-013
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 80 9e-013
emb|CS165493.1| Sequence 1 from Patent WO2005085453 80 9e-013
emb|CS165496.1| Sequence 4 from Patent WO2005085453 80 9e-013
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 80 9e-013
gb|BX839096.1|BX839096 BX839096 Arabidopsis thaliana Adult ... 56 1e-005
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 56 1e-005
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 56 1e-005
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 56 1e-005
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 56 1e-005
emb|AX506835.1| Sequence 1530 from Patent WO0216655 56 1e-005
emb|AX651787.1| Sequence 640 from Patent WO03000898 56 1e-005
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 56 1e-005
gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, com... 46 0.013
gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 m... 46 0.013
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.013
gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveg... 42 0.20
gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRN... 42 0.20
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.20
gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mR... 42 0.20
gb|AF334717.1| Arabidopsis thaliana auxin response factor A... 42 0.20
gb|AY059746.1| Arabidopsis thaliana auxin response factor A... 42 0.20
gb|AY091392.1| Arabidopsis thaliana putative auxin response... 42 0.20
gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BA... 42 0.20
emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cD... 42 0.20
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.20
gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1... 42 0.20
emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome... 42 0.20
emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome... 42 0.20
ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE ... 42 0.20
ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription ... 42 0.20
ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPON... 42 0.20
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.20
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.20
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
Length = 3171
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1160 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1219
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1220 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1279
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1280 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1339
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1340 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1399
Query: 439 gg 440
||
Sbjct: 1400 gg 1401
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 977 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1036
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1037 tggagtgtgtttgttagctccaaaaggctagttgc 1071
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
factor (At5g62000) mRNA, complete cds
Length = 3498
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1321 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1380
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1381 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1440
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1441 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1500
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1501 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1560
Query: 439 gg 440
||
Sbjct: 1561 gg 1562
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 1138 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1197
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1198 tggagtgtgtttgttagctccaaaaggctagttgc 1232
>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds
Length = 2037
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 820 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 879
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 880 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 939
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 940 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 999
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1000 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1059
Query: 439 gg 440
||
Sbjct: 1060 gg 1061
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 637 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 696
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 697 tggagtgtgtttgttagctccaaaaggctagttgc 731
>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete
cds
Length = 2772
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 820 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 879
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 880 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 939
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 940 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 999
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1000 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1059
Query: 439 gg 440
||
Sbjct: 1060 gg 1061
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 637 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 696
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 697 tggagtgtgtttgttagctccaaaaggctagttgc 731
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-07-O11
Length = 3317
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1158 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1217
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1218 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1277
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1278 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1337
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1338 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1397
Query: 439 gg 440
||
Sbjct: 1398 gg 1399
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 975 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1034
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1035 tggagtgtgtttgttagctccaaaaggctagttgc 1069
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-09-L23
Length = 3317
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1158 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1217
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1218 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1277
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1278 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1337
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1338 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1397
Query: 439 gg 440
||
Sbjct: 1398 gg 1399
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 975 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1034
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1035 tggagtgtgtttgttagctccaaaaggctagttgc 1069
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-16-M02
Length = 3317
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1158 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1217
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1218 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1277
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1278 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1337
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1338 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1397
Query: 439 gg 440
||
Sbjct: 1398 gg 1399
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 975 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1034
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1035 tggagtgtgtttgttagctccaaaaggctagttgc 1069
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-18-M11
Length = 3316
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1110 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1169
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1170 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1229
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1230 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1289
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1290 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1349
Query: 439 gg 440
||
Sbjct: 1350 gg 1351
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 927 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 986
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 987 tggagtgtgtttgttagctccaaaaggctagttgc 1021
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-19-K22
Length = 3275
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1108 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1167
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1168 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1227
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1228 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1287
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1288 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1347
Query: 439 gg 440
||
Sbjct: 1348 gg 1349
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 925 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 984
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 985 tggagtgtgtttgttagctccaaaaggctagttgc 1019
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-31-F22
Length = 3335
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1129 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1188
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1189 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1248
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1249 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1308
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1309 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1368
Query: 439 gg 440
||
Sbjct: 1369 gg 1370
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 946 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1005
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1006 tggagtgtgtttgttagctccaaaaggctagttgc 1040
>emb|CS165494.1| Sequence 2 from Patent WO2005085453
Length = 3384
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1195 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1254
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1255 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1314
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1315 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1374
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1375 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1434
Query: 439 gg 440
||
Sbjct: 1435 gg 1436
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 1012 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1071
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1072 tggagtgtgtttgttagctccaaaaggctagttgc 1106
>emb|CS165497.1| Sequence 5 from Patent WO2005085453
Length = 2576
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 816 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 875
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 876 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 935
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 936 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 995
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 996 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1055
Query: 439 gg 440
||
Sbjct: 1056 gg 1057
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 633 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 692
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 693 tggagtgtgtttgttagctccaaaaggctagttgc 727
>emb|CS165547.1| Sequence 55 from Patent WO2005085453
Length = 2580
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 820 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 879
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 880 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 939
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 940 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 999
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1000 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1059
Query: 439 gg 440
||
Sbjct: 1060 gg 1061
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 637 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 696
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 697 tggagtgtgtttgttagctccaaaaggctagttgc 731
>emb|CS165548.1| Sequence 56 from Patent WO2005085453
Length = 2576
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 816 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 875
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 876 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 935
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 936 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 995
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 996 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1055
Query: 439 gg 440
||
Sbjct: 1056 gg 1057
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 633 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 692
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 693 tggagtgtgtttgttagctccaaaaggctagttgc 727
>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.1
mRNA, complete cds
Length = 3513
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1321 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1380
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1381 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1440
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1441 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1500
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1501 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1560
Query: 439 gg 440
||
Sbjct: 1561 gg 1562
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 1138 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1197
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1198 tggagtgtgtttgttagctccaaaaggctagttgc 1232
>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.2
mRNA, complete cds
Length = 3384
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1195 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1254
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1255 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1314
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1315 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1374
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1375 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1434
Query: 439 gg 440
||
Sbjct: 1435 gg 1436
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 1012 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1071
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1072 tggagtgtgtttgttagctccaaaaggctagttgc 1106
>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000 (ARF2)
transcript variant AT5G62000.3 mRNA, complete cds
Length = 3387
Score = 131 bits (66), Expect = 3e-028
Identities = 198/242 (81%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatctcggggttcttgcgactgcatggcacgcg 258
||||| |||||||||||||| ||||||||||| || || || || || |||||||| ||
Sbjct: 1195 tcttctgttatatctagccatagcatgcatcttggagtactggccaccgcatggcatgcc 1254
Query: 259 attaacacaaagtccatgttcactgtctactacaagcctaggacgagcccttcagagttt 318
||| ||| | | ||||| || ||||||||||| || ||||||||||| || ||||||
Sbjct: 1255 atttcaacagggactatgtttacagtctactacaaacccaggacgagcccatctgagttt 1314
Query: 319 atcattccatatgatcaatatatggagtcagtaaaaaacaattattctattgggatgaga 378
|| |||| | ||||| ||||||||||| || || || || || |||||||| ||||||
Sbjct: 1315 attgttccgttcgatcagtatatggagtctgttaagaataactactctattggcatgaga 1374
Query: 379 ttcaggatgaggtttgaaggggaagaggcccccgagcagaggtttactggtacaatagtt 438
|||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| |||
Sbjct: 1375 ttcaaaatgagatttgaaggcgaagaggctcctgagcagaggtttactggcacaatcgtt 1434
Query: 439 gg 440
||
Sbjct: 1435 gg 1436
Score = 61.9 bits (31), Expect = 2e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 16 gagtggcgattccgccacatcttccgcgggcaacccaggaggcatctccttcagagtggt 75
|||||||||||| | || || ||||| || ||||| |||||||| | || ||||||||
Sbjct: 1012 gagtggcgattcagacatatattccggggtcaaccacggaggcatttgctacagagtggg 1071
Query: 76 tggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| ||||| || ||||||||||| |||||
Sbjct: 1072 tggagtgtgtttgttagctccaaaaggctagttgc 1106
>dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10
Length = 81284
Score = 79.8 bits (40), Expect = 9e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||||||||| || |||||||| |||| | ||||| ||||||||||| || || ||
Sbjct: 15313 aggacgagcccatctgagtttattgttccgttcgatcagtatatggagtctgttaagaat 15372
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|| || |||||||| |||||||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 15373 aactactctattggcatgagattcaaaatgagatttgaaggcgaagaggctcctgagcag 15432
Query: 418 aggt 421
||||
Sbjct: 15433 aggt 15436
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 53 ggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| | || |||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct: 14855 ggaggcatttgctacagagtgggtggagtgtgtttgttagctccaaaaggctagttgc 14912
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatct 230
||||| |||||||||||||| |||||||||||
Sbjct: 15080 tcttctgttatatctagccatagcatgcatct 15111
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 79.8 bits (40), Expect = 9e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||||||||| || |||||||| |||| | ||||| ||||||||||| || || ||
Sbjct: 22097892 aggacgagcccatctgagtttattgttccgttcgatcagtatatggagtctgttaagaat 22097951
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|| || |||||||| |||||||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 22097952 aactactctattggcatgagattcaaaatgagatttgaaggcgaagaggctcctgagcag 22098011
Query: 418 aggt 421
||||
Sbjct: 22098012 aggt 22098015
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 53 ggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| | || |||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct: 22097434 ggaggcatttgctacagagtgggtggagtgtgtttgttagctccaaaaggctagttgc 22097491
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatct 230
||||| |||||||||||||| |||||||||||
Sbjct: 22097659 tcttctgttatatctagccatagcatgcatct 22097690
>emb|CS165493.1| Sequence 1 from Patent WO2005085453
Length = 8718
Score = 79.8 bits (40), Expect = 9e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||||||||| || |||||||| |||| | ||||| ||||||||||| || || ||
Sbjct: 6092 aggacgagcccatctgagtttattgttccgttcgatcagtatatggagtctgttaagaat 6151
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|| || |||||||| |||||||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 6152 aactactctattggcatgagattcaaaatgagatttgaaggcgaagaggctcctgagcag 6211
Query: 418 aggt 421
||||
Sbjct: 6212 aggt 6215
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 53 ggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| | || |||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct: 5634 ggaggcatttgctacagagtgggtggagtgtgtttgttagctccaaaaggctagttgc 5691
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatct 230
||||| |||||||||||||| |||||||||||
Sbjct: 5859 tcttctgttatatctagccatagcatgcatct 5890
>emb|CS165496.1| Sequence 4 from Patent WO2005085453
Length = 8718
Score = 79.8 bits (40), Expect = 9e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||||||||| || |||||||| |||| | ||||| ||||||||||| || || ||
Sbjct: 6092 aggacgagcccatctgagtttattgttccgttcgatcagtatatggagtctgttaagaat 6151
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|| || |||||||| |||||||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 6152 aactactctattggcatgagattcaaaatgagatttgaaggcgaagaggctcctgagcag 6211
Query: 418 aggt 421
||||
Sbjct: 6212 aggt 6215
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 53 ggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| | || |||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct: 5634 ggaggcatttgctacagagtgggtggagtgtgtttgttagctccaaaaggctagttgc 5691
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatct 230
||||| |||||||||||||| |||||||||||
Sbjct: 5859 tcttctgttatatctagccatagcatgcatct 5890
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 79.8 bits (40), Expect = 9e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 298 aggacgagcccttcagagtttatcattccatatgatcaatatatggagtcagtaaaaaac 357
||||||||||| || |||||||| |||| | ||||| ||||||||||| || || ||
Sbjct: 24929805 aggacgagcccatctgagtttattgttccgttcgatcagtatatggagtctgttaagaat 24929864
Query: 358 aattattctattgggatgagattcaggatgaggtttgaaggggaagaggcccccgagcag 417
|| || |||||||| |||||||||| ||||| |||||||| |||||||| || ||||||
Sbjct: 24929865 aactactctattggcatgagattcaaaatgagatttgaaggcgaagaggctcctgagcag 24929924
Query: 418 aggt 421
||||
Sbjct: 24929925 aggt 24929928
Score = 52.0 bits (26), Expect = 2e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 53 ggaggcatctccttcagagtggttggagtgtttttgtcagttccaaaaggcttgttgc 110
|||||||| | || |||||||| |||||||| ||||| || ||||||||||| |||||
Sbjct: 24929347 ggaggcatttgctacagagtgggtggagtgtgtttgttagctccaaaaggctagttgc 24929404
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 199 tcttcggttatatctagccaaagcatgcatct 230
||||| |||||||||||||| |||||||||||
Sbjct: 24929572 tcttctgttatatctagccatagcatgcatct 24929603
>gb|BX839096.1|BX839096 BX839096 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS95ZC10 5PRIM, mRNA
sequence
Length = 1008
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 593 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 652
>gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response transcription factor 3 (ARF3)
mRNA, complete cds
Length = 2124
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 765 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 824
>gb|AF336917.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1827
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 607 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 666
>gb|AF360313.1| Arabidopsis thaliana auxin response transcription factor 3
(ETTIN/ARF3) (At2g33860) mRNA, complete cds
Length = 2114
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 705 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 764
>gb|AY056365.1| Arabidopsis thaliana auxin response transcription factor 3
(At2g33860) mRNA, complete cds
Length = 1858
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 607 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 666
>emb|AX506835.1| Sequence 1530 from Patent WO0216655
Length = 1827
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 607 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 666
>emb|AX651787.1| Sequence 640 from Patent WO03000898
Length = 1827
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 607 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 666
>ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcription factor AT2G33860
(ETT) mRNA, complete cds
Length = 2160
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacatcttccgcgggcaacccaggaggcat 60
||||| |||||| ||||||||||||| |||||||| | || |||||||| |||||||||
Sbjct: 765 gatcttcatggcctggagtggcgatttcgccacatttatcgagggcaacctaggaggcat 824
>gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, complete cds
Length = 4054
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gatctgcatggcatggagtggcgattccgccacat 35
||||| |||||| ||||||||||||| ||||||||
Sbjct: 1747 gatcttcatggcctggagtggcgatttcgccacat 1781
>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
sequence
Length = 114144
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 gatctgcatggcatggagtggcgattccgccacat 35
||||| |||||| ||||||||||||| ||||||||
Sbjct: 80376 gatcttcatggcctggagtggcgatttcgccacat 80342
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 gatctgcatggcatggagtggcgattccgccacat 35
||||| |||||| ||||||||||||| ||||||||
Sbjct: 14334400 gatcttcatggcctggagtggcgatttcgccacat 14334366
>gb|AV528283.1|AV528283 AV528283 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL05d03R 5', mRNA
sequence
Length = 484
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 91 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 131
>gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRNA, complete cds
Length = 3832
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 1335 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 1375
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 10697707 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 10697667
>gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds
Length = 2331
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 1169 gattcagaatgaggtttgaaggagaagag 1197
>gb|AF334717.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 1809
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 884 gattcagaatgaggtttgaaggagaagag 912
>gb|AY059746.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 2307
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 1104 gattcagaatgaggtttgaaggagaagag 1132
>gb|AY091392.1| Arabidopsis thaliana putative auxin response factor protein
(At3g61830) mRNA, complete cds
Length = 1840
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 884 gattcagaatgaggtttgaaggagaagag 912
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete
sequence
Length = 82281
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 67960 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 68000
>emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS50ZC04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2115
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 1001 gattcagaatgaggtttgaaggagaagag 1029
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 22848177 gattcagaatgaggtttgaaggagaagag 22848205
>gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete
cds
Length = 2839
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 589 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 629
>emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16
Length = 104868
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 101263 gattcagaatgaggtttgaaggagaagag 101291
>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14
Length = 142001
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 52575 gattcagaatgaggtttgaaggagaagag 52603
>ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6); transcription
factor AT1G30330 (ARF6) transcript variant AT1G30330.1
mRNA, complete cds
Length = 3868
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 1346 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 1386
>ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription factor AT3G61830 (ARF18)
mRNA, complete cds
Length = 2347
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 1166 gattcagaatgaggtttgaaggagaagag 1194
>ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPONSE FACTOR 6) AT1G30330
(ARF6) transcript variant AT1G30330.2 mRNA, complete cds
Length = 3111
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 73 ggttggagtgtttttgtcagttccaaaaggcttgttgctgg 113
|||||||| || ||||| ||| | |||||||||||||||||
Sbjct: 589 ggttggagcgtatttgtgagtgctaaaaggcttgttgctgg 629
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 377 gattcaggatgaggtttgaaggggaagag 405
||||||| |||||||||||||| ||||||
Sbjct: 22900878 gattcagaatgaggtttgaaggagaagag 22900906
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 431,004
Number of Sequences: 1013581
Number of extensions: 431004
Number of successful extensions: 31220
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29985
Number of HSP's gapped (non-prelim): 1235
length of query: 1095
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1075
effective length of database: 888,669,252
effective search space: 955319445900
effective search space used: 955319445900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)