BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750698.2.1
(1126 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|BX824959.1|CNS0A6P2 Arabidopsis thaliana Full-length cD... 84 6e-014
emb|AJ584646.1| Arabidopsis thaliana mRNA for putative alde... 84 6e-014
ref|NM_111545.3| Arabidopsis thaliana ALDH22a1; aldehyde de... 84 6e-014
ref|NM_202513.1| Arabidopsis thaliana ALDH22a1; aldehyde de... 84 6e-014
gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BA... 64 6e-008
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 64 6e-008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 64 6e-008
emb|AJ527794.1|ATH527794 Arabidopsis thaliana T-DNA flankin... 50 8e-004
emb|AJ528059.1|ATH528059 Arabidopsis thaliana T-DNA flankin... 50 8e-004
emb|CR360842.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.013
gb|AV565359.1|AV565359 AV565359 Arabidopsis thaliana green ... 42 0.21
>emb|BX824959.1|CNS0A6P2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH85ZG04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2107
Score = 83.8 bits (42), Expect = 6e-014
Identities = 210/266 (78%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 1252 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 1311
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 1312 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 1371
Query: 295 actggcctggtgaatgttgatcacacaatgaaaattatgcaagaagagacatttggacct 354
|||| || | ||||| | |||| |||||||| ||| |||||||| | ||||||||
Sbjct: 1372 actgttctcatcaatgtgaaccacaacatgaaaataatgaaagaagaggcttttggacca 1431
Query: 355 attataccaatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactca 414
|| || ||||||||| ||||||| | |||||||||| || || || ||||| || |||
Sbjct: 1432 ataatgccaatcatgcaattcagcaccgatgaagaggtcataaagctggcaaatgattca 1491
Query: 415 aaatatggtcttggctgtgctgtttt 440
|||| ||| ||||||||||||||
Sbjct: 1492 cgttatgctctaggctgtgctgtttt 1517
Score = 54.0 bits (27), Expect = 5e-005
Identities = 117/147 (79%)
Strand = Plus / Plus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccagtctttgccattcggtggtgttaaa 558
||||||||||| ||||| |||| ||||||||||||||| | || || || ||||| ||
Sbjct: 1576 gcaatcaatgactttgcatcaaattacatgtgccagtcgctcccgtttggaggtgtaaag 1635
Query: 559 gacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaag 618
|| || || || || | |||||||| ||||||| || |||| ||||| ||||||||
Sbjct: 1636 gatagtgggtttggacggtttgctggaatagaaggtttaagagcatgctgtcttgtgaaa 1695
Query: 619 tctgttgtagaagatagattgtggcca 645
|| || || ||||||||||| ||||||
Sbjct: 1696 tcggtggttgaagatagattttggcca 1722
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 1120 ggtgctgaaagattttatgtccacaaagacatttatactgc 1160
>emb|AJ584646.1| Arabidopsis thaliana mRNA for putative aldehyde dehydrogenase
(aldh22A1 gene)
Length = 1810
Score = 83.8 bits (42), Expect = 6e-014
Identities = 210/266 (78%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 1139 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 1198
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 1199 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 1258
Query: 295 actggcctggtgaatgttgatcacacaatgaaaattatgcaagaagagacatttggacct 354
|||| || | ||||| | |||| |||||||| ||| |||||||| | ||||||||
Sbjct: 1259 actgttctcatcaatgtgaaccacaacatgaaaataatgaaagaagaggcttttggacca 1318
Query: 355 attataccaatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactca 414
|| || ||||||||| ||||||| | |||||||||| || || || ||||| || |||
Sbjct: 1319 ataatgccaatcatgcaattcagcaccgatgaagaggtcataaagctggcaaatgattca 1378
Query: 415 aaatatggtcttggctgtgctgtttt 440
|||| ||| ||||||||||||||
Sbjct: 1379 cgttatgctctaggctgtgctgtttt 1404
Score = 54.0 bits (27), Expect = 5e-005
Identities = 117/147 (79%)
Strand = Plus / Plus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccagtctttgccattcggtggtgttaaa 558
||||||||||| ||||| |||| ||||||||||||||| | || || || ||||| ||
Sbjct: 1463 gcaatcaatgactttgcatcaaattacatgtgccagtcgctcccgtttggaggtgtaaag 1522
Query: 559 gacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaag 618
|| || || || || | |||||||| ||||||| || |||| ||||| ||||||||
Sbjct: 1523 gatagtgggtttggacggtttgctggaatagaaggtttaagagcatgctgtcttgtgaaa 1582
Query: 619 tctgttgtagaagatagattgtggcca 645
|| || || ||||||||||| ||||||
Sbjct: 1583 tcggtggttgaagatagattttggcca 1609
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 1007 ggtgctgaaagattttatgtccacaaagacatttatactgc 1047
>ref|NM_111545.3| Arabidopsis thaliana ALDH22a1; aldehyde dehydrogenase/ oxidoreductase
AT3G66658 (ALDH22a1) transcript variant AT3G66658.1 mRNA,
complete cds
Length = 2155
Score = 83.8 bits (42), Expect = 6e-014
Identities = 210/266 (78%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 1256 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 1315
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 1316 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 1375
Query: 295 actggcctggtgaatgttgatcacacaatgaaaattatgcaagaagagacatttggacct 354
|||| || | ||||| | |||| |||||||| ||| |||||||| | ||||||||
Sbjct: 1376 actgttctcatcaatgtgaaccacaacatgaaaataatgaaagaagaggcttttggacca 1435
Query: 355 attataccaatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactca 414
|| || ||||||||| ||||||| | |||||||||| || || || ||||| || |||
Sbjct: 1436 ataatgccaatcatgcaattcagcaccgatgaagaggtcataaagctggcaaatgattca 1495
Query: 415 aaatatggtcttggctgtgctgtttt 440
|||| ||| ||||||||||||||
Sbjct: 1496 cgttatgctctaggctgtgctgtttt 1521
Score = 54.0 bits (27), Expect = 5e-005
Identities = 117/147 (79%)
Strand = Plus / Plus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccagtctttgccattcggtggtgttaaa 558
||||||||||| ||||| |||| ||||||||||||||| | || || || ||||| ||
Sbjct: 1580 gcaatcaatgactttgcatcaaattacatgtgccagtcgctcccgtttggaggtgtaaag 1639
Query: 559 gacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaag 618
|| || || || || | |||||||| ||||||| || |||| ||||| ||||||||
Sbjct: 1640 gatagtgggtttggacggtttgctggaatagaaggtttaagagcatgctgtcttgtgaaa 1699
Query: 619 tctgttgtagaagatagattgtggcca 645
|| || || ||||||||||| ||||||
Sbjct: 1700 tcggtggttgaagatagattttggcca 1726
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 1124 ggtgctgaaagattttatgtccacaaagacatttatactgc 1164
>ref|NM_202513.1| Arabidopsis thaliana ALDH22a1; aldehyde dehydrogenase/ oxidoreductase
AT3G66658 (ALDH22a1) transcript variant AT3G66658.2 mRNA,
complete cds
Length = 2151
Score = 83.8 bits (42), Expect = 6e-014
Identities = 210/266 (78%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 1256 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 1315
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 1316 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 1375
Query: 295 actggcctggtgaatgttgatcacacaatgaaaattatgcaagaagagacatttggacct 354
|||| || | ||||| | |||| |||||||| ||| |||||||| | ||||||||
Sbjct: 1376 actgttctcatcaatgtgaaccacaacatgaaaataatgaaagaagaggcttttggacca 1435
Query: 355 attataccaatcatgaaattcagttctgatgaagaggctatcaaacttgcaaacgactca 414
|| || ||||||||| ||||||| | |||||||||| || || || ||||| || |||
Sbjct: 1436 ataatgccaatcatgcaattcagcaccgatgaagaggtcataaagctggcaaatgattca 1495
Query: 415 aaatatggtcttggctgtgctgtttt 440
|||| ||| ||||||||||||||
Sbjct: 1496 cgttatgctctaggctgtgctgtttt 1521
Score = 54.0 bits (27), Expect = 5e-005
Identities = 117/147 (79%)
Strand = Plus / Plus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccagtctttgccattcggtggtgttaaa 558
||||||||||| ||||| |||| ||||||||||||||| | || || || ||||| ||
Sbjct: 1580 gcaatcaatgactttgcatcaaattacatgtgccagtcgctcccgtttggaggtgtaaag 1639
Query: 559 gacagcggattcgggagatttgctggcgtagaaggcttgcgagcttgctgccttgtgaag 618
|| || || || || | |||||||| ||||||| || |||| ||||| ||||||||
Sbjct: 1640 gatagtgggtttggacggtttgctggaatagaaggtttaagagcatgctgtcttgtgaaa 1699
Query: 619 tctgttgtagaagatagattgtggcca 645
|| || || ||||||||||| ||||||
Sbjct: 1700 tcggtggttgaagatagattttggcca 1726
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 1124 ggtgctgaaagattttatgtccacaaagacatttatactgc 1164
>gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence, complete
sequence
Length = 51646
Score = 63.9 bits (32), Expect = 6e-008
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 24703 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 24762
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 24763 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 24822
Query: 295 actg 298
||||
Sbjct: 24823 actg 24826
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccag 534
||||||||||| ||||| |||| |||||||||||||
Sbjct: 25134 gcaatcaatgactttgcatcaaattacatgtgccag 25169
Score = 42.1 bits (21), Expect = 0.21
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 577 tttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagataga 636
|||||||| ||||||| || |||| ||||| |||||||| || || || |||||||||
Sbjct: 25333 tttgctggaatagaaggtttaagagcatgctgtcttgtgaaatcggtggttgaagataga 25392
Query: 637 ttgtggcca 645
|| ||||||
Sbjct: 25393 ttttggcca 25401
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 24200 ggtgctgaaagattttatgtccacaaagacatttatactgc 24240
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 63.9 bits (32), Expect = 6e-008
Identities = 101/124 (81%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 2090057 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 2090116
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 2090117 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 2090176
Query: 295 actg 298
||||
Sbjct: 2090177 actg 2090180
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccag 534
||||||||||| ||||| |||| |||||||||||||
Sbjct: 2090488 gcaatcaatgactttgcatcaaattacatgtgccag 2090523
Score = 42.1 bits (21), Expect = 0.21
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 577 tttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagataga 636
|||||||| ||||||| || |||| ||||| |||||||| || || || |||||||||
Sbjct: 2090687 tttgctggaatagaaggtttaagagcatgctgtcttgtgaaatcggtggttgaagataga 2090746
Query: 637 ttgtggcca 645
|| ||||||
Sbjct: 2090747 ttttggcca 2090755
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 2089554 ggtgctgaaagattttatgtccacaaagacatttatactgc 2089594
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 63.9 bits (32), Expect = 6e-008
Identities = 101/124 (81%)
Strand = Plus / Minus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 2096325 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 2096266
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatcaatttttcccacca 294
|| ||| | || || ||||| |||| |||||||||||||| ||||||| |||||| |||
Sbjct: 2096265 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatcaatatttccctcca 2096206
Query: 295 actg 298
||||
Sbjct: 2096205 actg 2096202
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 499 gcaatcaatgattttgcttcaagttacatgtgccag 534
||||||||||| ||||| |||| |||||||||||||
Sbjct: 2095894 gcaatcaatgactttgcatcaaattacatgtgccag 2095859
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 2096828 ggtgctgaaagattttatgtccacaaagacatttatactgc 2096788
Score = 42.1 bits (21), Expect = 0.21
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 577 tttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagataga 636
|||||||| ||||||| || |||| ||||| |||||||| || || || |||||||||
Sbjct: 2095695 tttgctggaatagaaggtttaagagcatgctgtcttgtgaaatcggtggttgaagataga 2095636
Query: 637 ttgtggcca 645
|| ||||||
Sbjct: 2095635 ttttggcca 2095627
>emb|AJ527794.1|ATH527794 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
147F02
Length = 199
Score = 50.1 bits (25), Expect = 8e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 577 tttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagataga 636
|||||||| ||||||| || |||| ||||| |||||||| || ||||| |||||||||
Sbjct: 149 tttgctggaatagaagggttaagagcatgctgtcttgtgaaatcggttgttgaagataga 90
Query: 637 ttgtggcca 645
|| ||||||
Sbjct: 89 ttttggcca 81
>emb|AJ528059.1|ATH528059 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
155A06
Length = 199
Score = 50.1 bits (25), Expect = 8e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 577 tttgctggcgtagaaggcttgcgagcttgctgccttgtgaagtctgttgtagaagataga 636
|||||||| ||||||| || |||| ||||| |||||||| || ||||| |||||||||
Sbjct: 149 tttgctggaatagaagggttaagagcatgctgtcttgtgaaatcggttgttgaagataga 90
Query: 637 ttgtggcca 645
|| ||||||
Sbjct: 89 ttttggcca 81
>emb|CR360842.1| Arabidopsis thaliana T-DNA flanking sequence GK-823G07-025509,
genomic survey sequence
Length = 423
Score = 46.1 bits (23), Expect = 0.013
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 175 gagcactctgagaaacttcagaatcttgttaatgatgctctagacaaaggtgccgaaatt 234
||||||||||| | || |||| ||||| ||||| || |||||||||| || ||||||
Sbjct: 317 gagcactctgaacacctacagagccttgtaaatgacgccttagacaaaggagctgaaatt 376
Query: 235 gccgtcagggggagttttggcaatcttggggaagatgcagttgatca 281
|| ||| | || || ||||| |||| |||||||||||||| |||||
Sbjct: 377 gcagtccgtggcagctttggtcatctgggggaagatgcagtcgatca 423
>gb|AV565359.1|AV565359 AV565359 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ222e09F 3', mRNA sequence
Length = 296
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 43 ggtgctgaaagattttatgttcacgatgacatctattctgc 83
|||||||||||||||||||| ||| | ||||| ||| ||||
Sbjct: 178 ggtgctgaaagattttatgtccacaaagacatttatactgc 218
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 505,747
Number of Sequences: 1013581
Number of extensions: 505747
Number of successful extensions: 33893
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33528
Number of HSP's gapped (non-prelim): 364
length of query: 1126
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1106
effective length of database: 888,669,252
effective search space: 982868192712
effective search space used: 982868192712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)