BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|B29733.1|B29733 T16G17TFB TAMU Arabidopsis thaliana geno... 60 5e-007
gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10... 60 5e-007
gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R1... 60 5e-007
gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA... 60 5e-007
dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosom... 60 5e-007
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 60 5e-007
gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5... 60 5e-007
dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding ... 60 5e-007
dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding ... 60 5e-007
dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding ... 60 5e-007
dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding ... 60 5e-007
dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding ... 60 5e-007
dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding ... 60 5e-007
emb|CS165493.1| Sequence 1 from Patent WO2005085453 60 5e-007
emb|CS165494.1| Sequence 2 from Patent WO2005085453 60 5e-007
emb|CS165496.1| Sequence 4 from Patent WO2005085453 60 5e-007
emb|CS165497.1| Sequence 5 from Patent WO2005085453 60 5e-007
emb|CS165547.1| Sequence 55 from Patent WO2005085453 60 5e-007
emb|CS165548.1| Sequence 56 from Patent WO2005085453 60 5e-007
ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 60 5e-007
ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 60 5e-007
ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE ... 60 5e-007
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 60 5e-007
gb|BX837073.1|BX837073 BX837073 Arabidopsis thaliana Adult ... 56 8e-006
gb|AQ955227.1|AQ955227 LERAB10TF LERA Arabidopsis thaliana ... 54 3e-005
gb|AQ955228.1|AQ955228 LERAB10TR LERA Arabidopsis thaliana ... 54 3e-005
gb|CW836310.1|CW836310 ET7435.Ds3.07.28.00.b.546 Arabidopsi... 54 3e-005
gb|BE523322.1|BE523322 M34C10STM Arabidopsis developing see... 54 3e-005
gb|BE523850.1|BE523850 M42D10STM Arabidopsis developing see... 54 3e-005
gb|AV827554.1|AV827554 AV827554 RAFL9 Arabidopsis thaliana ... 54 3e-005
gb|BX837695.1|BX837695 BX837695 Arabidopsis thaliana Hormon... 54 3e-005
gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mR... 54 3e-005
gb|AF334717.1| Arabidopsis thaliana auxin response factor A... 54 3e-005
gb|AY059746.1| Arabidopsis thaliana auxin response factor A... 54 3e-005
gb|AY091392.1| Arabidopsis thaliana putative auxin response... 54 3e-005
emb|AJ523867.1|ATH523867 Arabidopsis thaliana T-DNA flankin... 54 3e-005
gb|AC006418.4| Arabidopsis thaliana chromosome 2 clone F13A... 54 3e-005
gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C... 54 3e-005
emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cD... 54 3e-005
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 54 3e-005
gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At... 54 3e-005
emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome... 54 3e-005
emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome... 54 3e-005
ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription ... 54 3e-005
ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 54 3e-005
ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE... 54 3e-005
ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPO... 54 3e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 54 3e-005
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 54 3e-005
gb|BX839096.1|BX839096 BX839096 Arabidopsis thaliana Adult ... 52 1e-004
gb|BX840815.1|BX840815 BX840815 Arabidopsis thaliana Flower... 52 1e-004
gb|U89296.1|ATU89296 Arabidopsis thaliana auxin response tr... 52 1e-004
gb|AF007788.1|AF007788 Arabidopsis thaliana ETTIN gene, com... 52 1e-004
gb|AF336917.1| Arabidopsis thaliana auxin response transcri... 52 1e-004
gb|AF360313.1| Arabidopsis thaliana auxin response transcri... 52 1e-004
gb|AY056365.1| Arabidopsis thaliana auxin response transcri... 52 1e-004
emb|AX506835.1| Sequence 1530 from Patent WO0216655 52 1e-004
emb|AX651787.1| Sequence 640 from Patent WO03000898 52 1e-004
gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 m... 52 1e-004
ref|NM_128946.2| Arabidopsis thaliana ETT (ETTIN); transcri... 52 1e-004
emb|AJ590274.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.12
emb|AL945068.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.47
gb|AF013467.1|AF013467 Arabidopsis thaliana ARF6 (ARF6) mRN... 40 0.47
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 40 0.47
gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BA... 40 0.47
gb|AY669788.1| Arabidopsis thaliana clone C105343 ARF6 (At1... 40 0.47
ref|NM_102771.2| Arabidopsis thaliana ARF6 (AUXIN RESPONSE ... 40 0.47
ref|NM_001036038.1| Arabidopsis thaliana ARF6 (AUXIN RESPON... 40 0.47
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.47
>gb|B29733.1|B29733 T16G17TFB TAMU Arabidopsis thaliana genomic clone T16G17, DNA
sequence
Length = 456
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 327 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 384
>gb|AF378862.1|AF378862 Arabidopsis thaliana AT5g62000/mtg10_20 mRNA, complete cds
Length = 3171
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 825 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 882
>gb|BT000784.1| Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response
factor (At5g62000) mRNA, complete cds
Length = 3498
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 986 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 1043
>gb|BT001072.1| Arabidopsis thaliana At5g62000/mtg10_20 mRNA, complete cds
Length = 2037
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 485 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 542
>dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10
Length = 81284
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 14470 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 14527
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 22097049 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 22097106
>gb|AY669787.1| Arabidopsis thaliana clone C105342 ARF2 (At5g62000) mRNA, complete
cds
Length = 2772
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 485 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 542
>dbj|AK221252.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-07-O11
Length = 3317
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 823 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 880
>dbj|AK221254.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-09-L23
Length = 3317
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 823 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 880
>dbj|AK221274.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-16-M02
Length = 3317
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 823 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 880
>dbj|AK221277.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-18-M11
Length = 3316
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 775 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 832
>dbj|AK221282.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-19-K22
Length = 3275
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 773 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 830
>dbj|AK221305.1| Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds,
clone: RAFL24-31-F22
Length = 3335
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 794 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 851
>emb|CS165493.1| Sequence 1 from Patent WO2005085453
Length = 8718
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 5249 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 5306
>emb|CS165494.1| Sequence 2 from Patent WO2005085453
Length = 3384
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 860 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 917
>emb|CS165496.1| Sequence 4 from Patent WO2005085453
Length = 8718
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 5249 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 5306
>emb|CS165497.1| Sequence 5 from Patent WO2005085453
Length = 2576
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 481 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 538
>emb|CS165547.1| Sequence 55 from Patent WO2005085453
Length = 2580
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 485 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 542
>emb|CS165548.1| Sequence 56 from Patent WO2005085453
Length = 2576
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 481 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 538
>ref|NM_180913.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.1
mRNA, complete cds
Length = 3513
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 986 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 1043
>ref|NM_125593.2| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2); transcription
factor AT5G62000 (ARF2) transcript variant AT5G62000.2
mRNA, complete cds
Length = 3384
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 860 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 917
>ref|NM_203251.1| Arabidopsis thaliana ARF2 (AUXIN RESPONSE FACTOR 2) AT5G62000
(ARF2) transcript variant AT5G62000.3 mRNA, complete cds
Length = 3387
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 860 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 917
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 24928962 attcgttctgcaaaaccttgactgcatccgacacaagtacacatggtggattttctgt 24929019
>gb|BX837073.1|BX837073 BX837073 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS73ZE03 5PRIM, mRNA
sequence
Length = 930
Score = 56.0 bits (28), Expect = 8e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 598 tgactgcttcagatacaagtacccatggtggattctctgt 637
|||| |||||||||||||| || |||||||||||||||||
Sbjct: 688 tgacagcttcagatacaagcacacatggtggattctctgt 727
>gb|AQ955227.1|AQ955227 LERAB10TF LERA Arabidopsis thaliana genomic clone LERAB10, DNA
sequence
Length = 126
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 8 gcttcagatacaagcactcatggtggattctctgt 42
>gb|AQ955228.1|AQ955228 LERAB10TR LERA Arabidopsis thaliana genomic clone LERAB10, DNA
sequence
Length = 783
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 583 gcttcagatacaagcactcatggtggattctctgt 549
>gb|CW836310.1|CW836310 ET7435.Ds3.07.28.00.b.546 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET7435, DNA sequence
Length = 546
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 134 gcttcagatacaagcactcatggtggattctctgt 100
>gb|BE523322.1|BE523322 M34C10STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M34C10 5', mRNA sequence
Length = 331
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 143 gcttcagatacaagcactcatggtggattctctgt 177
>gb|BE523850.1|BE523850 M42D10STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M42D10 5', mRNA sequence
Length = 384
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 143 gcttcagatacaagcactcatggtggattctctgt 177
>gb|AV827554.1|AV827554 AV827554 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-16-M20 5',
mRNA sequence
Length = 628
Score = 54.0 bits (27), Expect = 3e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 600 actgcttcagatacaagtacccatggtggattctctgt 637
|||||||| |||||||| ||||||||||| ||||||||
Sbjct: 589 actgcttctgatacaagcacccatggtggnttctctgt 626
>gb|BX837695.1|BX837695 BX837695 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH70ZC10 5PRIM,
mRNA sequence
Length = 951
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 709 gcttcagatacaagcacacatggtggattctctgt 743
>gb|AY070463.1| Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds
Length = 2331
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 685 gcttcagatacaagcactcatggtggattctctgt 719
>gb|AF334717.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 1809
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 400 gcttcagatacaagcactcatggtggattctctgt 434
>gb|AY059746.1| Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA,
complete cds
Length = 2307
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 620 gcttcagatacaagcactcatggtggattctctgt 654
>gb|AY091392.1| Arabidopsis thaliana putative auxin response factor protein
(At3g61830) mRNA, complete cds
Length = 1840
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 400 gcttcagatacaagcactcatggtggattctctgt 434
>emb|AJ523867.1|ATH523867 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
063D10
Length = 347
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 197 gcttcagatacaagcacacatggtggattctctgt 163
>gb|AC006418.4| Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete
sequence
Length = 84825
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 30363 gcttcagatacaagcacacatggtggattctctgt 30397
>gb|AC006526.8| Arabidopsis thaliana chromosome 2 clone F11C10 map CIC02E07, complete
sequence
Length = 95214
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 89424 gcttcagatacaagcacacatggtggattctctgt 89458
>emb|BX823552.1|CNS0A4QR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS50ZC04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2115
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 517 gcttcagatacaagcactcatggtggattctctgt 551
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 22847359 gcttcagatacaagcactcatggtggattctctgt 22847393
>gb|AY669791.1| Arabidopsis thaliana clone C105346 ARF11 (At2g46530) mRNA, complete
cds
Length = 1900
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 451 gcttcagatacaagcacacatggtggattctctgt 485
>emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16
Length = 104868
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 100445 gcttcagatacaagcactcatggtggattctctgt 100479
>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14
Length = 142001
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 51757 gcttcagatacaagcactcatggtggattctctgt 51791
>ref|NM_116048.2| Arabidopsis thaliana ARF18; transcription factor AT3G61830 (ARF18)
mRNA, complete cds
Length = 2347
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 682 gcttcagatacaagcactcatggtggattctctgt 716
>ref|NM_130218.3| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor AT2G46530 (ARF11) transcript
variant AT2G46530.1 mRNA, complete cds
Length = 2425
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 705 gcttcagatacaagcacacatggtggattctctgt 739
>ref|NM_201972.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor AT2G46530 (ARF11) transcript
variant AT2G46530.2 mRNA, complete cds
Length = 2413
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 693 gcttcagatacaagcacacatggtggattctctgt 727
>ref|NM_001036471.1| Arabidopsis thaliana ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor AT2G46530 (ARF11) transcript
variant AT2G46530.3 mRNA, complete cds
Length = 2171
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 451 gcttcagatacaagcacacatggtggattctctgt 485
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 19112792 gcttcagatacaagcacacatggtggattctctgt 19112826
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 600 actgcttcagatacaagtacccatggtggattctctgt 637
|||||||| |||||||| ||||||||||| ||||||||
Sbjct: 14334636 actgcttctgatacaagcacccatggtggtttctctgt 14334599
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 54.0 bits (27), Expect = 3e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 603 gcttcagatacaagtacccatggtggattctctgt 637
|||||||||||||| || |||||||||||||||||
Sbjct: 22900060 gcttcagatacaagcactcatggtggattctctgt 22900094
>gb|BX839096.1|BX839096 BX839096 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS95ZC10 5PRIM, mRNA
sequence
Length = 1008
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 600 actgcttcagatacaagtacccatggtggattctctgt 637
|||||||| |||||||| ||||||||||| ||||||||
Sbjct: 476 actgcttctgatacaagcacccatggtggtttctctgt 513
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 241,825
Number of Sequences: 1013581
Number of extensions: 241825
Number of successful extensions: 19059
Number of sequences better than 0.5: 69
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18304
Number of HSP's gapped (non-prelim): 755
length of query: 660
length of database: 908,940,872
effective HSP length: 20
effective length of query: 640
effective length of database: 888,669,252
effective search space: 568748321280
effective search space used: 568748321280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)