BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2649891.2.1
         (621 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL461531.1|CL461531  SAIL_1149_C08.v1 SAIL Collection Ara...    40   0.44 
gb|CL476291.1|CL476291  SAIL_252_G10.v1 SAIL Collection Arab...    40   0.44 

>gb|CL461531.1|CL461531 SAIL_1149_C08.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_1149_C08.v1, DNA sequence
          Length = 1235

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 cggcgcccacgccgccgccg 403
           ||||||||||||||||||||
Sbjct: 748 cggcgcccacgccgccgccg 767



>gb|CL476291.1|CL476291 SAIL_252_G10.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_252_G10.v1, DNA sequence
          Length = 1110

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 160 cggcgggcgggcgcgcgcgc 179
           ||||||||||||||||||||
Sbjct: 681 cggcgggcgggcgcgcgcgc 662



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,961
Number of Sequences: 1013581
Number of extensions: 139961
Number of successful extensions: 9548
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9546
Number of HSP's gapped (non-prelim): 2
length of query: 621
length of database: 908,940,872
effective HSP length: 20
effective length of query: 601
effective length of database: 888,669,252
effective search space: 534090220452
effective search space used: 534090220452
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)