BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY062697.1| Arabidopsis thaliana putative polygalacturon... 94 7e-017
gb|AY128793.1| Arabidopsis thaliana putative polygalacturon... 94 7e-017
emb|BX827554.1|CNS0A3PU Arabidopsis thaliana Full-length cD... 94 7e-017
emb|BX828415.1|CNS0A3TQ Arabidopsis thaliana Full-length cD... 94 7e-017
emb|BX826583.1|CNS0A44I Arabidopsis thaliana Full-length cD... 94 7e-017
ref|NM_118513.2| Arabidopsis thaliana polygalacturonase AT4... 94 7e-017
gb|BT002785.1| Arabidopsis thaliana clone RAFL15-01-J24 (R2... 58 4e-006
gb|BT004354.1| Arabidopsis thaliana clone U20163 putative p... 58 4e-006
ref|NM_119498.3| Arabidopsis thaliana polygalacturonase AT4... 58 4e-006
emb|BX831722.1|CNS0A0Y2 Arabidopsis thaliana Full-length cD... 50 9e-004
gb|AF324992.2|AF324992 Arabidopsis thaliana AT3g62110 (AT3g... 46 0.014
gb|BT000724.1| Arabidopsis thaliana clone RAFL09-23-I08 (R1... 46 0.014
emb|BX830657.1|CNS0A0RJ Arabidopsis thaliana Full-length cD... 46 0.014
gb|BT015129.1| Arabidopsis thaliana At5g41870 gene, complet... 46 0.014
ref|NM_123552.1| Arabidopsis thaliana polygalacturonase AT5... 46 0.014
ref|NM_116076.2| Arabidopsis thaliana polygalacturonase AT3... 46 0.014
gb|AY081277.1| Arabidopsis thaliana unknown protein (At1g19... 44 0.054
gb|BT000031.1| Arabidopsis thaliana unknown protein (At1g19... 44 0.054
emb|BX815931.1|CNS0AAHN Arabidopsis thaliana Full-length cD... 44 0.054
emb|BX816894.1|CNS0ABXQ Arabidopsis thaliana Full-length cD... 44 0.054
emb|BX817182.1|CNS0ABUL Arabidopsis thaliana Full-length cD... 44 0.054
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.054
emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome... 44 0.054
ref|NM_101775.3| Arabidopsis thaliana polygalacturonase AT1... 44 0.054
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.054
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.22
emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome ... 42 0.22
emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome ... 42 0.22
emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome... 42 0.22
emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosom... 42 0.22
emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosom... 42 0.22
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.22
>gb|AY062697.1| Arabidopsis thaliana putative polygalacturonase (At4g23820;
F9D16.290) mRNA, complete cds
Length = 1541
Score = 93.7 bits (47), Expect = 7e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 800 cggccataggcgattccatactcatcccagccactcttgatggcgatggaatcgtcacca 859
||||||||||||||||| |||| ||||| || || |||||||| | ||||| ||
Sbjct: 841 cggccataggcgattccgtactggtcccaaccgcttttgatggccactaggtcgtctcct 782
Query: 860 gtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatcc 919
|| || |||||| | || || ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 781 gttgagatgtaggagtcttctatgcagacgttgtagctggaatctggatcgattccatcg 722
Query: 920 gtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaa 979
|||||||| || || |||||||||| ||| || |||| ||| ||||| |||||||||
Sbjct: 721 gtgttgggagaatcttgtggagctaagatcgtaacgtgatggatgacaacgttgctgcaa 662
Query: 980 taaacaggatggatgttccagaa 1002
|| |||||||| |||||||||||
Sbjct: 661 tacacaggatgaatgttccagaa 639
>gb|AY128793.1| Arabidopsis thaliana putative polygalacturonase (At4g23820) mRNA,
complete cds
Length = 1408
Score = 93.7 bits (47), Expect = 7e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 800 cggccataggcgattccatactcatcccagccactcttgatggcgatggaatcgtcacca 859
||||||||||||||||| |||| ||||| || || |||||||| | ||||| ||
Sbjct: 800 cggccataggcgattccgtactggtcccaaccgcttttgatggccactaggtcgtctcct 741
Query: 860 gtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatcc 919
|| || |||||| | || || ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 740 gttgagatgtaggagtcttctatgcagacgttgtagctggaatctggatcgattccatcg 681
Query: 920 gtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaa 979
|||||||| || || |||||||||| ||| || |||| ||| ||||| |||||||||
Sbjct: 680 gtgttgggagaatcttgtggagctaagatcgtaacgtgatggatgacaacgttgctgcaa 621
Query: 980 taaacaggatggatgttccagaa 1002
|| |||||||| |||||||||||
Sbjct: 620 tacacaggatgaatgttccagaa 598
>emb|BX827554.1|CNS0A3PU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS72ZG11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1461
Score = 93.7 bits (47), Expect = 7e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 800 cggccataggcgattccatactcatcccagccactcttgatggcgatggaatcgtcacca 859
||||||||||||||||| |||| ||||| || || |||||||| | ||||| ||
Sbjct: 826 cggccataggcgattccgtactggtcccaaccgcttttgatggccactaggtcgtctcct 767
Query: 860 gtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatcc 919
|| || |||||| | || || ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 766 gttgagatgtaggagtcttctatgcagacgttgtagctggaatctggatcgattccatcg 707
Query: 920 gtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaa 979
|||||||| || || |||||||||| ||| || |||| ||| ||||| |||||||||
Sbjct: 706 gtgttgggagaatcttgtggagctaagatcgtaacgtgatggatgacaacgttgctgcaa 647
Query: 980 taaacaggatggatgttccagaa 1002
|| |||||||| |||||||||||
Sbjct: 646 tacacaggatgaatgttccagaa 624
>emb|BX828415.1|CNS0A3TQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH87ZA12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1325
Score = 93.7 bits (47), Expect = 7e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 800 cggccataggcgattccatactcatcccagccactcttgatggcgatggaatcgtcacca 859
||||||||||||||||| |||| ||||| || || |||||||| | ||||| ||
Sbjct: 769 cggccataggcgattccgtactggtcccaaccgcttttgatggccactaggtcgtctcct 710
Query: 860 gtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatcc 919
|| || |||||| | || || ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 709 gttgagatgtaggagtcttctatgcagacgttgtagctggaatctggatcgattccatcg 650
Query: 920 gtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaa 979
|||||||| || || |||||||||| ||| || |||| ||| ||||| |||||||||
Sbjct: 649 gtgttgggagaatcttgtggagctaagatcgtaacgtgatggatgacaacgttgctgcaa 590
Query: 980 taaacaggatggatgttccagaa 1002
|| |||||||| |||||||||||
Sbjct: 589 tacacaggatgaatgttccagaa 567
>emb|BX826583.1|CNS0A44I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB43ZF05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1491
Score = 93.7 bits (47), Expect = 7e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 800 cggccataggcgattccatactcatcccagccactcttgatggcgatggaatcgtcacca 859
||||||||||||||||| |||| ||||| || || |||||||| | ||||| ||
Sbjct: 812 cggccataggcgattccgtactggtcccaaccgcttttgatggccactaggtcgtctcct 753
Query: 860 gtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatcc 919
|| || |||||| | || || ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 752 gttgagatgtaggagtcttctatgcagacgttgtagctggaatctggatcgattccatcg 693
Query: 920 gtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaa 979
|||||||| || || |||||||||| ||| || |||| ||| ||||| |||||||||
Sbjct: 692 gtgttgggagaatcttgtggagctaagatcgtaacgtgatggatgacaacgttgctgcaa 633
Query: 980 taaacaggatggatgttccagaa 1002
|| |||||||| |||||||||||
Sbjct: 632 tacacaggatgaatgttccagaa 610
>ref|NM_118513.2| Arabidopsis thaliana polygalacturonase AT4G23820 mRNA, complete cds
Length = 1555
Score = 93.7 bits (47), Expect = 7e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 800 cggccataggcgattccatactcatcccagccactcttgatggcgatggaatcgtcacca 859
||||||||||||||||| |||| ||||| || || |||||||| | ||||| ||
Sbjct: 841 cggccataggcgattccgtactggtcccaaccgcttttgatggccactaggtcgtctcct 782
Query: 860 gtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatcaattccatcc 919
|| || |||||| | || || ||||||| |||| ||||||||||||||| ||||||||
Sbjct: 781 gttgagatgtaggagtcttctatgcagacgttgtagctggaatctggatcgattccatcg 722
Query: 920 gtgttgggggagtcatgtggagctaggatagtcacgtttctgatcacaacattgctgcaa 979
|||||||| || || |||||||||| ||| || |||| ||| ||||| |||||||||
Sbjct: 721 gtgttgggagaatcttgtggagctaagatcgtaacgtgatggatgacaacgttgctgcaa 662
Query: 980 taaacaggatggatgttccagaa 1002
|| |||||||| |||||||||||
Sbjct: 661 tacacaggatgaatgttccagaa 639
>gb|BT002785.1| Arabidopsis thaliana clone RAFL15-01-J24 (R20163) putative
polygalacturonase (At4g33440) mRNA, complete cds
Length = 1755
Score = 58.0 bits (29), Expect = 4e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 938 ggagctaggatagtcacgtttctgatcacaacattgctgcaataaacaggatggatgttc 997
||||| ||||| |||| ||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 839 ggagcaaggatggtcatatttctaataacaacattactgcaataaacaggatggattgtc 780
Query: 998 cagaa 1002
|||||
Sbjct: 779 cagaa 775
>gb|BT004354.1| Arabidopsis thaliana clone U20163 putative polygalacturonase
(At4g33440) mRNA, complete cds
Length = 1459
Score = 58.0 bits (29), Expect = 4e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 938 ggagctaggatagtcacgtttctgatcacaacattgctgcaataaacaggatggatgttc 997
||||| ||||| |||| ||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 755 ggagcaaggatggtcatatttctaataacaacattactgcaataaacaggatggattgtc 696
Query: 998 cagaa 1002
|||||
Sbjct: 695 cagaa 691
>ref|NM_119498.3| Arabidopsis thaliana polygalacturonase AT4G33440 mRNA, complete cds
Length = 1734
Score = 58.0 bits (29), Expect = 4e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 938 ggagctaggatagtcacgtttctgatcacaacattgctgcaataaacaggatggatgttc 997
||||| ||||| |||| ||||| || |||||||| |||||||||||||||||||| ||
Sbjct: 835 ggagcaaggatggtcatatttctaataacaacattactgcaataaacaggatggattgtc 776
Query: 998 cagaa 1002
|||||
Sbjct: 775 cagaa 771
>emb|BX831722.1|CNS0A0Y2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH25ZH04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1536
Score = 50.1 bits (25), Expect = 9e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 851 tcgtcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatca 910
||||||||||| || |||||| | || || || |||| ||| ||| ||||||||||||
Sbjct: 850 tcgtcaccagtagatatgtaggagtcttctatacagacgttagagcttgaatctggatca 791
Query: 911 attccatccgtgttgggggagtcatgtggagctaggatagt 951
|||||||| |||||| | || ||| |||||| ||||||||
Sbjct: 790 attccatcggtgttgtgcgaatcagttggagcgaggatagt 750
>gb|AF324992.2|AF324992 Arabidopsis thaliana AT3g62110 (AT3g62110/T17J13_70) mRNA, complete
cds
Length = 1817
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttcca 999
||||||| ||||||||||||||||| ||||||||
Sbjct: 784 acaacatctctgcaataaacaggatgaatgttcca 750
>gb|BT000724.1| Arabidopsis thaliana clone RAFL09-23-I08 (R18368) unknown protein
(At3g62110) mRNA, complete cds
Length = 1824
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttcca 999
||||||| ||||||||||||||||| ||||||||
Sbjct: 784 acaacatctctgcaataaacaggatgaatgttcca 750
>emb|BX830657.1|CNS0A0RJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS10ZF11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1491
Score = 46.1 bits (23), Expect = 0.014
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 851 tcgtcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatca 910
||||||||||| || |||||| | || || || |||| ||| |||||||| |||||||
Sbjct: 797 tcgtcaccagtagatatgtaggagtcttctatacagacgttagagctggaatgtggatca 738
Query: 911 attccatccgtgttg 925
|||||||| ||||||
Sbjct: 737 attccatcggtgttg 723
>gb|BT015129.1| Arabidopsis thaliana At5g41870 gene, complete cds
Length = 1505
Score = 46.1 bits (23), Expect = 0.014
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 851 tcgtcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatca 910
||||||||||| || |||||| | || || || |||| ||| ||| ||||||||||||
Sbjct: 844 tcgtcaccagtagatatgtaggagtcttctatacagacgttagagcttgaatctggatca 785
Query: 911 attccatccgtgttg 925
|||||||| ||||||
Sbjct: 784 attccatcggtgttg 770
>ref|NM_123552.1| Arabidopsis thaliana polygalacturonase AT5G41870 mRNA, complete cds
Length = 1350
Score = 46.1 bits (23), Expect = 0.014
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 851 tcgtcaccagtcgaaatgtagcaatcctcgatgcagatgttgctgctggaatctggatca 910
||||||||||| || |||||| | || || || |||| ||| ||| ||||||||||||
Sbjct: 764 tcgtcaccagtagatatgtaggagtcttctatacagacgttagagcttgaatctggatca 705
Query: 911 attccatccgtgttg 925
|||||||| ||||||
Sbjct: 704 attccatcggtgttg 690
>ref|NM_116076.2| Arabidopsis thaliana polygalacturonase AT3G62110 mRNA, complete cds
Length = 1841
Score = 46.1 bits (23), Expect = 0.014
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 965 acaacattgctgcaataaacaggatggatgttcca 999
||||||| ||||||||||||||||| ||||||||
Sbjct: 784 acaacatctctgcaataaacaggatgaatgttcca 750
>gb|AY081277.1| Arabidopsis thaliana unknown protein (At1g19170) mRNA, complete cds
Length = 1736
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 899 gaatctggatcaattccatccgtgtt 924
|||||||||||||||||||| |||||
Sbjct: 979 gaatctggatcaattccatcagtgtt 954
>gb|BT000031.1| Arabidopsis thaliana unknown protein (At1g19170) mRNA, complete cds
Length = 1584
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 899 gaatctggatcaattccatccgtgtt 924
|||||||||||||||||||| |||||
Sbjct: 845 gaatctggatcaattccatcagtgtt 820
>emb|BX815931.1|CNS0AAHN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH18ZC02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1678
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 899 gaatctggatcaattccatccgtgtt 924
|||||||||||||||||||| |||||
Sbjct: 924 gaatctggatcaattccatcagtgtt 899
>emb|BX816894.1|CNS0ABXQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH75ZA06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1622
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 899 gaatctggatcaattccatccgtgtt 924
|||||||||||||||||||| |||||
Sbjct: 891 gaatctggatcaattccatcagtgtt 866
>emb|BX817182.1|CNS0ABUL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH90ZG05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1627
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 899 gaatctggatcaattccatccgtgtt 924
|||||||||||||||||||| |||||
Sbjct: 924 gaatctggatcaattccatcagtgtt 899
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttcca 999
||||||||||||||||| ||||||||
Sbjct: 22956536 ctgcaataaacaggatgaatgttcca 22956561
>emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T17J13
Length = 85217
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttcca 999
||||||||||||||||| ||||||||
Sbjct: 25907 ctgcaataaacaggatgaatgttcca 25932
>ref|NM_101775.3| Arabidopsis thaliana polygalacturonase AT1G19170 mRNA, complete cds
Length = 1766
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 899 gaatctggatcaattccatccgtgtt 924
|||||||||||||||||||| |||||
Sbjct: 979 gaatctggatcaattccatcagtgtt 954
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.054
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttcca 999
||||||||||||||||| ||||||||
Sbjct: 23009237 ctgcaataaacaggatgaatgttcca 23009262
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||| |||||||
Sbjct: 12006609 ctgcaataaacaggatggattgtccagaa 12006581
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||| |||||||| |||||||||||
Sbjct: 8310956 ctgcaatacacaggatgaatgttccagaa 8310984
>emb|AL035394.1|ATF9D16 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project)
Length = 119430
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||| |||||||| |||||||||||
Sbjct: 115978 ctgcaatacacaggatgaatgttccagaa 116006
>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project)
Length = 96475
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||| |||||||
Sbjct: 57137 ctgcaataaacaggatggattgtccagaa 57109
>emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A16 (ESSA
project)
Length = 89826
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||| |||||||| |||||||||||
Sbjct: 7664 ctgcaatacacaggatgaatgttccagaa 7692
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60
Length = 196677
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||| |||||||| |||||||||||
Sbjct: 57569 ctgcaatacacaggatgaatgttccagaa 57597
>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
Length = 199536
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
|||||||||||||||||||| |||||||
Sbjct: 121916 ctgcaataaacaggatggattgtccagaa 121888
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
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Sbjct: 16093830 ctgcaataaacaggatggattgtccagaa 16093802
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 974 ctgcaataaacaggatggatgttccagaa 1002
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Sbjct: 12398195 ctgcaatacacaggatgaatgttccagaa 12398223
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 434,775
Number of Sequences: 1013581
Number of extensions: 434775
Number of successful extensions: 30202
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29305
Number of HSP's gapped (non-prelim): 891
length of query: 1179
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1159
effective length of database: 888,669,252
effective search space: 1029967663068
effective search space used: 1029967663068
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)