BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647391.2.1
(1118 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL470317.1|CL470317 SAIL_140_A11.v1 SAIL Collection Arab... 42 0.20
gb|CL499055.1|CL499055 SAIL_662_G10.v1 SAIL Collection Arab... 42 0.20
>gb|CL470317.1|CL470317 SAIL_140_A11.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_140_A11.v1, DNA sequence
Length = 1280
Score = 42.1 bits (21), Expect = 0.20
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 467 gcggcggcggtggcgcgcgcccgcg 491
|||||||||| ||||||||||||||
Sbjct: 683 gcggcggcggcggcgcgcgcccgcg 659
>gb|CL499055.1|CL499055 SAIL_662_G10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_662_G10.v1, DNA sequence
Length = 2140
Score = 42.1 bits (21), Expect = 0.20
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 465 gggcggcggcggtggcgcgcgcccgcgag 493
|||||||||||| ||||||||| ||||||
Sbjct: 380 gggcggcggcggcggcgcgcgcgcgcgag 408
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 348,100
Number of Sequences: 1013581
Number of extensions: 348100
Number of successful extensions: 25660
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25655
Number of HSP's gapped (non-prelim): 5
length of query: 1118
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1098
effective length of database: 888,669,252
effective search space: 975758838696
effective search space used: 975758838696
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)