BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV808646.1|AV808646 AV808646 RAFL9 Arabidopsis thaliana ... 52 1e-004
gb|CF653057.1|CF653057 93-L020166-066-001-J23-SP6P MPIZ-ADI... 52 1e-004
gb|AV440503.1|AV440503 AV440503 Arabidopsis thaliana above-... 52 1e-004
gb|BP563121.1|BP563121 BP563121 RAFL13 Arabidopsis thaliana... 52 1e-004
gb|AY054227.1| Arabidopsis thaliana AT5g47750/MCA23_7 mRNA,... 52 1e-004
gb|AY062501.1| Arabidopsis thaliana protein kinase 5 (MCA23... 52 1e-004
gb|AY093303.1| Arabidopsis thaliana protein kinase 5 (MCA23... 52 1e-004
gb|AY113177.1| Arabidopsis thaliana AT5g47750/MCA23_7 mRNA,... 52 1e-004
dbj|D10909.1|ATHPK5 Arabidopsis thaliana gene for serine/th... 52 1e-004
dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosom... 52 1e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 52 1e-004
ref|NM_124149.2| Arabidopsis thaliana kinase AT5G47750 mRNA... 52 1e-004
ref|NM_124148.2| Arabidopsis thaliana unknown protein AT5G4... 52 1e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 52 1e-004
emb|AJ552359.1|ATH552359 Arabidopsis thaliana T-DNA flankin... 50 4e-004
emb|AL162506.1|ATF17C15 Arabidopsis thaliana DNA chromosome... 50 4e-004
ref|NM_120445.1| Arabidopsis thaliana kinase AT5G03640 mRNA... 50 4e-004
gb|B29006.1|B29006 T23M18TR TAMU Arabidopsis thaliana genom... 48 0.002
gb|B29138.1|B29138 T27C20TF TAMU Arabidopsis thaliana genom... 48 0.002
gb|B78430.1|B78430 T27C20TF.1 TAMU Arabidopsis thaliana gen... 48 0.002
gb|CB260202.1|CB260202 86-E9535-013-002-K21-T7R MPIZ-ADIS-0... 48 0.002
gb|AY078927.1| Arabidopsis thaliana At2g44830/T13E15.16 mRN... 48 0.002
gb|AC002388.3| Arabidopsis thaliana chromosome 2 clone T13E... 48 0.002
ref|NM_180095.1| Arabidopsis thaliana kinase AT2G44830 mRNA... 48 0.002
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.002
emb|BX656089.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.10
emb|BX656090.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.10
emb|AX507823.1| Sequence 2518 from Patent WO0216655 42 0.10
gb|BT010571.1| Arabidopsis thaliana At3g27580 gene, complet... 42 0.10
dbj|D10910.1|ATHATPK Arabidopsis thaliana Atpk7 gene for se... 42 0.10
dbj|AB025626.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.10
dbj|AK175529.1| Arabidopsis thaliana mRNA for serine/threon... 42 0.10
dbj|AK176399.1| Arabidopsis thaliana mRNA for serine/threon... 42 0.10
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.10
ref|NM_113674.2| Arabidopsis thaliana ATPK7; kinase AT3G275... 42 0.10
ref|NM_001035707.1| Arabidopsis thaliana ATPK7; kinase AT3G... 42 0.10
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.10
gb|BP665582.1|BP665582 BP665582 RAFL21 Arabidopsis thaliana... 40 0.41
>gb|AV808646.1|AV808646 AV808646 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-55-L23 3',
mRNA sequence
Length = 417
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 333 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 392
Query: 404 cc 405
||
Sbjct: 393 cc 394
>gb|CF653057.1|CF653057 93-L020166-066-001-J23-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001J231Q 5-PRIME, mRNA sequence
Length = 617
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 242 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 183
Query: 404 cc 405
||
Sbjct: 182 cc 181
>gb|AV440503.1|AV440503 AV440503 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD65g05_f 3', mRNA
sequence
Length = 418
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 303 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 362
Query: 404 cc 405
||
Sbjct: 363 cc 364
>gb|BP563121.1|BP563121 BP563121 RAFL13 Arabidopsis thaliana cDNA clone RAFL13-01-A03 3',
mRNA sequence
Length = 643
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 350 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 409
Query: 404 cc 405
||
Sbjct: 410 cc 411
>gb|AY054227.1| Arabidopsis thaliana AT5g47750/MCA23_7 mRNA, complete cds
Length = 2143
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 1798 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 1739
Query: 404 cc 405
||
Sbjct: 1738 cc 1737
>gb|AY062501.1| Arabidopsis thaliana protein kinase 5 (MCA23.7) mRNA, complete cds
Length = 2251
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 1856 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 1797
Query: 404 cc 405
||
Sbjct: 1796 cc 1795
>gb|AY093303.1| Arabidopsis thaliana protein kinase 5 (MCA23.7) mRNA, complete cds
Length = 1855
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 1610 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 1551
Query: 404 cc 405
||
Sbjct: 1550 cc 1549
>gb|AY113177.1| Arabidopsis thaliana AT5g47750/MCA23_7 mRNA, complete cds
Length = 1761
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 1610 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 1551
Query: 404 cc 405
||
Sbjct: 1550 cc 1549
>dbj|D10909.1|ATHPK5 Arabidopsis thaliana gene for serine/threonine protein kinase,
complete cds
Length = 4059
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 3799 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 3740
Query: 404 cc 405
||
Sbjct: 3739 cc 3738
>dbj|AB016886.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCA23
Length = 82503
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 17331 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 17390
Query: 404 cc 405
||
Sbjct: 17391 cc 17392
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 17480225 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 17480284
Query: 404 cc 405
||
Sbjct: 17480285 cc 17480286
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||||||| |||||||||| |||||| ||||| | |||||| || |||||
Sbjct: 930219 caccggatcaacgcccagttcaagccttcgaagaacgcatgccgttttatctc 930167
>ref|NM_124149.2| Arabidopsis thaliana kinase AT5G47750 mRNA, complete cds
Length = 2272
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 1877 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 1818
Query: 404 cc 405
||
Sbjct: 1817 cc 1816
>ref|NM_124148.2| Arabidopsis thaliana unknown protein AT5G47740 mRNA, complete cds
Length = 1639
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 1327 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 1386
Query: 404 cc 405
||
Sbjct: 1387 cc 1388
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggct 403
||||| ||||| |||||||||| ||||| ||||| || ||| |||||| ||||||||||
Sbjct: 19357324 caccgaatcaaagcccagttcacaccttcgaagaaagggtgctgcttaacctcagtggct 19357383
Query: 404 cc 405
||
Sbjct: 19357384 cc 19357385
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||||||| |||||||||| |||||| ||||| | |||||| || |||||
Sbjct: 930662 caccggatcaacgcccagttcaagccttcgaagaacgcatgccgttttatctc 930610
>emb|AJ552359.1|ATH552359 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
334F05
Length = 429
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||||||| |||||||||| |||||| ||||| | |||||| || |||||
Sbjct: 202 caccggatcaacgcccagttcaagccttcgaagaacgcatgccgttttatctc 150
>emb|AL162506.1|ATF17C15 Arabidopsis thaliana DNA chromosome 5, BAC clone F17C15 (ESSA project)
Length = 102897
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||||||| |||||||||| |||||| ||||| | |||||| || |||||
Sbjct: 25922 caccggatcaacgcccagttcaagccttcgaagaacgcatgccgttttatctc 25870
>ref|NM_120445.1| Arabidopsis thaliana kinase AT5G03640 mRNA, complete cds
Length = 2781
Score = 50.1 bits (25), Expect = 4e-004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 344 caccggatcaaggcccagttcaggccttcaaagaagggatgccgcttaatctc 396
||||||||||| |||||||||| |||||| ||||| | |||||| || |||||
Sbjct: 2663 caccggatcaacgcccagttcaagccttcgaagaacgcatgccgttttatctc 2611
>gb|B29006.1|B29006 T23M18TR TAMU Arabidopsis thaliana genomic clone T23M18, DNA
sequence
Length = 556
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 191 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 250
>gb|B29138.1|B29138 T27C20TF TAMU Arabidopsis thaliana genomic clone T27C20, DNA
sequence
Length = 352
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 191 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 250
>gb|B78430.1|B78430 T27C20TF.1 TAMU Arabidopsis thaliana genomic clone T27C20, DNA
sequence
Length = 496
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 184 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 243
>gb|CB260202.1|CB260202 86-E9535-013-002-K21-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770K212Q 5-PRIME, mRNA sequence
Length = 680
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 540 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 481
>gb|AY078927.1| Arabidopsis thaliana At2g44830/T13E15.16 mRNA, complete cds
Length = 2369
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 2148 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 2089
>gb|AC002388.3| Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete
sequence
Length = 85534
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 60865 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 60924
>ref|NM_180095.1| Arabidopsis thaliana kinase AT2G44830 mRNA, complete cds
Length = 2369
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 2148 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 2089
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.002
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||| ||||| |||| ||||||||||| |||||| |||| ||||| || |||||||||
Sbjct: 18499670 atcaatgcccaattcacaccttcaaagaatggatgctgctttatctccgttgctcctctc 18499611
>emb|BX656089.1| Arabidopsis thaliana T-DNA flanking sequence GK-611D02-021888,
genomic survey sequence
Length = 501
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 295 ggatgctgcttaatctcagtagctcctct 323
>emb|BX656090.1| Arabidopsis thaliana T-DNA flanking sequence GK-611D02-021892,
genomic survey sequence
Length = 496
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 295 ggatgctgcttaatctcagtagctcctct 323
>emb|AX507823.1| Sequence 2518 from Patent WO0216655
Length = 1737
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 1541 ggatgctgcttaatctcagtagctcctct 1513
>gb|BT010571.1| Arabidopsis thaliana At3g27580 gene, complete cds
Length = 1737
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 1541 ggatgctgcttaatctcagtagctcctct 1513
>dbj|D10910.1|ATHATPK Arabidopsis thaliana Atpk7 gene for serine/threonine protein kinase,
complete cds
Length = 4719
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 3078 ggatgctgcttaatctcagtagctcctct 3050
>dbj|AB025626.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMJ24
Length = 54452
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 47180 ggatgctgcttaatctcagtagctcctct 47208
>dbj|AK175529.1| Arabidopsis thaliana mRNA for serine/threonine-protein kinase PK7,
complete cds, clone: RAFL21-94-N11
Length = 2124
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 1726 ggatgctgcttaatctcagtagctcctct 1698
>dbj|AK176399.1| Arabidopsis thaliana mRNA for serine/threonine-protein kinase, PK7,
complete cds, clone: RAFL24-11-A01
Length = 2483
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 2033 ggatgctgcttaatctcagtagctcctct 2005
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 10151837 ggatgctgcttaatctcagtagctcctct 10151865
>ref|NM_113674.2| Arabidopsis thaliana ATPK7; kinase AT3G27580 (ATPK7) transcript
variant AT3G27580.1 mRNA, complete cds
Length = 1737
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 1541 ggatgctgcttaatctcagtagctcctct 1513
>ref|NM_001035707.1| Arabidopsis thaliana ATPK7; kinase AT3G27580 (ATPK7) transcript
variant AT3G27580.2 mRNA, complete cds
Length = 2473
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 2033 ggatgctgcttaatctcagtagctcctct 2005
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 380 ggatgccgcttaatctcagtggctcctct 408
|||||| ||||||||||||| ||||||||
Sbjct: 10219104 ggatgctgcttaatctcagtagctcctct 10219132
>gb|BP665582.1|BP665582 BP665582 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-16-N16 3',
mRNA sequence
Length = 400
Score = 40.1 bits (20), Expect = 0.41
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 368 ccttcaaagaagggatgccgcttaatctcagt 399
||||||||||||||||| |||| ||||||||
Sbjct: 269 ccttcaaagaagggatgtggcttcatctcagt 300
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,142
Number of Sequences: 1013581
Number of extensions: 245142
Number of successful extensions: 15990
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15267
Number of HSP's gapped (non-prelim): 723
length of query: 578
length of database: 908,940,872
effective HSP length: 20
effective length of query: 558
effective length of database: 888,669,252
effective search space: 495877442616
effective search space used: 495877442616
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)