BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2623104.2.3
         (1540 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF043351.1|AF043351  Arabidopsis thaliana adenosine-5'-ph...    54   7e-005

>gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-phosphosulfate-kinase (akn2) mRNA,
            complete cds
          Length = 1311

 Score = 54.0 bits (27), Expect = 7e-005
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                       
Query: 1514 gtcgacgcggccgcgaattccagatct 1540
            |||||||||||||||||||||||||||
Sbjct: 1235 gtcgacgcggccgcgaattccagatct 1261



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 566,994
Number of Sequences: 1013581
Number of extensions: 566994
Number of successful extensions: 40849
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40847
Number of HSP's gapped (non-prelim): 2
length of query: 1540
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1519
effective length of database: 887,655,671
effective search space: 1348348964249
effective search space used: 1348348964249
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)