BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ288111.1|BZ288111 SALK_021494.33.25.x Arabidopsis thal... 50 7e-004
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 50 7e-004
gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence 50 7e-004
ref|NM_100084.1| Arabidopsis thaliana nucleic acid binding ... 50 7e-004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 50 7e-004
gb|B27769.1|B27769 T17E4TRB TAMU Arabidopsis thaliana genom... 48 0.003
emb|AL751905.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.003
emb|AL935998.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.003
gb|AV783380.1|AV783380 AV783380 RAFL5 Arabidopsis thaliana ... 48 0.003
gb|AV822577.1|AV822577 AV822577 RAFL5 Arabidopsis thaliana ... 48 0.003
gb|AF370341.1| Arabidopsis thaliana putative TINY AP2 domai... 48 0.003
gb|AY063000.1| Arabidopsis thaliana putative TINY AP2 domai... 48 0.003
gb|AC005395.3| Arabidopsis thaliana chromosome 2 clone F17H... 48 0.003
gb|AY560870.1| Arabidopsis thaliana putative AP2/EREBP tran... 48 0.003
gb|AY924749.1| Arabidopsis thaliana hypothetical protein (A... 48 0.003
ref|NM_128142.2| Arabidopsis thaliana transcription factor ... 48 0.003
gb|AY974198.1| Arabidopsis thaliana clone At2g25820 AP2/ERE... 48 0.003
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.003
gb|B11052.1|B11052 F19H7-Sp6 IGF Arabidopsis thaliana genom... 42 0.18
gb|AU237462.1|AU237462 AU237462 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP669100.1|BP669100 BP669100 RAFL21 Arabidopsis thaliana... 42 0.18
dbj|AB008486.1| Arabidopsis thaliana ARR3 mRNA for response... 42 0.18
gb|AC007258.3| Arabidopsis thaliana chromosome I BAC F23H11... 42 0.18
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.18
ref|NM_104686.2| Arabidopsis thaliana ARR3 (RESPONSE REGULA... 42 0.18
>gb|BZ288111.1|BZ288111 SALK_021494.33.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_021494.33.25.x,
DNA sequence
Length = 175
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 704 gacgacgacgaagatgaggaggaggatga 732
||||| |||||||||||||||||||||||
Sbjct: 104 gacgaggacgaagatgaggaggaggatga 76
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 704 gacgacgacgaagatgaggaggaggatga 732
||||| |||||||||||||||||||||||
Sbjct: 358541 gacgaggacgaagatgaggaggaggatga 358513
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence
Length = 106973
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 704 gacgacgacgaagatgaggaggaggatga 732
||||| |||||||||||||||||||||||
Sbjct: 8869 gacgaggacgaagatgaggaggaggatga 8841
>ref|NM_100084.1| Arabidopsis thaliana nucleic acid binding / transcription factor/
zinc ion binding AT1G02040 mRNA, complete cds
Length = 975
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 704 gacgacgacgaagatgaggaggaggatga 732
||||| |||||||||||||||||||||||
Sbjct: 598 gacgaggacgaagatgaggaggaggatga 626
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 50.1 bits (25), Expect = 7e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 704 gacgacgacgaagatgaggaggaggatga 732
||||| |||||||||||||||||||||||
Sbjct: 358481 gacgaggacgaagatgaggaggaggatga 358453
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 22070101 tcgtatccagtcattccaggcatacagtaatcagtgatgat 22070141
>gb|B27769.1|B27769 T17E4TRB TAMU Arabidopsis thaliana genomic clone T17E4, DNA
sequence
Length = 524
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 385 gaggacgaggacgaagatgaggatgaggatga 416
>emb|AL751905.1| Arabidopsis thaliana T-DNA flanking sequence GK-008G02-014800,
genomic survey sequence
Length = 218
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 115 gaggacgaggacgaagatgaggatgaggatga 146
>emb|AL935998.1| Arabidopsis thaliana T-DNA flanking sequence GK-015G02-017012,
genomic survey sequence
Length = 153
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 70 gaggacgaggacgaagatgaggatgaggatga 101
>gb|AV783380.1|AV783380 AV783380 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-09-B04 3',
mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 351 gaggacgaggacgaagatgaggatgaggatga 382
>gb|AV822577.1|AV822577 AV822577 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-09-B04 5',
mRNA sequence
Length = 670
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 356 gaggacgaggacgaagatgaggatgaggatga 325
>gb|AF370341.1| Arabidopsis thaliana putative TINY AP2 domain transcription factor
(At2g25820) mRNA, complete cds
Length = 721
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 355 gaggacgaggacgaagatgaggatgaggatga 324
>gb|AY063000.1| Arabidopsis thaliana putative TINY AP2 domain transcription factor
(At2g25820) mRNA, complete cds
Length = 532
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 287 gaggacgaggacgaagatgaggatgaggatga 256
>gb|AC005395.3| Arabidopsis thaliana chromosome 2 clone F17H15 map B68, complete
sequence
Length = 102004
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 60523 gaggacgaggacgaagatgaggatgaggatga 60554
>gb|AY560870.1| Arabidopsis thaliana putative AP2/EREBP transcription factor
(At2g25820) mRNA, complete cds
Length = 501
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 287 gaggacgaggacgaagatgaggatgaggatga 256
>gb|AY924749.1| Arabidopsis thaliana hypothetical protein (At2g25820) gene,
complete cds
Length = 501
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 287 gaggacgaggacgaagatgaggatgaggatga 256
>ref|NM_128142.2| Arabidopsis thaliana transcription factor AT2G25820 mRNA, complete
cds
Length = 727
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 376 gaggacgaggacgaagatgaggatgaggatga 345
>gb|AY974198.1| Arabidopsis thaliana clone At2g25820 AP2/EREBP transcription factor
mRNA, complete cds
Length = 774
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 560 gaggacgaggacgaagatgaggatgaggatga 529
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 701 gaggacgacgacgaagatgaggaggaggatga 732
|||||||| |||||||||||||| ||||||||
Sbjct: 11022527 gaggacgaggacgaagatgaggatgaggatga 11022496
>gb|B11052.1|B11052 F19H7-Sp6 IGF Arabidopsis thaliana genomic clone F19H7, DNA
sequence
Length = 1251
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 293 tcgtatccagtcattccaggcatacagtaatcagtgatgat 253
>gb|AU237462.1|AU237462 AU237462 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-27-H23 5',
mRNA sequence
Length = 627
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 389 tcgtatccagtcattccaggcatacagtaatcagtgatgat 349
>gb|BP669100.1|BP669100 BP669100 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-29-L09 3',
mRNA sequence
Length = 424
Score = 42.1 bits (21), Expect = 0.18
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 704 gacgacgacgaagatgaggaggaggatga 732
||||| || ||||||||||||||||||||
Sbjct: 346 gacgatgatgaagatgaggaggaggatga 318
>dbj|AB008486.1| Arabidopsis thaliana ARR3 mRNA for response regulator 3, complete
cds
Length = 1028
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 366 tcgtatccagtcattccaggcatacagtaatcagtgatgat 326
>gb|AC007258.3| Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence, complete
sequence
Length = 144422
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 132280 tcgtatccagtcattccaggcatacagtaatcagtgatgat 132320
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 6307752 tcgtatccagtcattccaggcatacagtaatcagtgatgat 6307792
>ref|NM_104686.2| Arabidopsis thaliana ARR3 (RESPONSE REGULATOR 3); transcription
regulator/ two-component response regulator AT1G59940
(ARR3) mRNA, complete cds
Length = 1051
Score = 42.1 bits (21), Expect = 0.18
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 629 tcgtatcctgtcatgccgggcatgcagtagtcagtgatgat 669
|||||||| ||||| || ||||| ||||| |||||||||||
Sbjct: 389 tcgtatccagtcattccaggcatacagtaatcagtgatgat 349
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 391,578
Number of Sequences: 1013581
Number of extensions: 391578
Number of successful extensions: 31628
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30941
Number of HSP's gapped (non-prelim): 687
length of query: 991
length of database: 908,940,872
effective HSP length: 20
effective length of query: 971
effective length of database: 888,669,252
effective search space: 862897843692
effective search space used: 862897843692
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)