BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana... 78 2e-012
gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Siliqu... 78 2e-012
gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots ... 78 2e-012
gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana... 78 2e-012
gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana... 78 2e-012
gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana... 78 2e-012
gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-... 78 2e-012
gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R2... 78 2e-012
gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R2... 78 2e-012
gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C... 78 2e-012
gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, compl... 78 2e-012
emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cD... 78 2e-012
emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cD... 78 2e-012
emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cD... 78 2e-012
emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cD... 78 2e-012
emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cD... 78 2e-012
emb|CQ769015.1| Sequence 19 from Patent WO2004007730 78 2e-012
gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence 78 2e-012
gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 78 2e-012
gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-o... 78 2e-012
ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 78 2e-012
ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylste... 78 2e-012
ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylste... 78 2e-012
ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylste... 78 2e-012
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 74 3e-011
gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis tha... 74 3e-011
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 74 3e-011
gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P... 70 5e-010
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 70 5e-010
gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, compl... 68 2e-009
ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylste... 68 2e-009
gb|BP581099.1|BP581099 BP581099 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|BP652719.1|BP652719 BP652719 RAFL19 Arabidopsis thaliana... 50 4e-004
gb|CW801524.1|CW801524 WiscDsLox493H10 Arabidopsis thaliana... 46 0.007
>gb|AU227233.1|AU227233 AU227233 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-89-L18 3',
mRNA sequence
Length = 417
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 269 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 328
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 329 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 388
Query: 526 gaa 528
|||
Sbjct: 389 gaa 391
>gb|BX840571.1|BX840571 BX840571 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana
cDNA clone GSLTSIL67ZB01 5PRIM, mRNA sequence
Length = 972
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 739 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 680
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 679 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 620
Query: 526 gaa 528
|||
Sbjct: 619 gaa 617
>gb|AV538026.1|AV538026 AV538026 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109c03F 3', mRNA sequence
Length = 617
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 270 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 329
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 330 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 389
Query: 526 gaa 528
|||
Sbjct: 390 gaa 392
>gb|BP595589.1|BP595589 BP595589 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-L16 3',
mRNA sequence
Length = 445
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 249 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 308
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 309 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 368
Query: 526 gaa 528
|||
Sbjct: 369 gaa 371
>gb|BP610683.1|BP610683 BP610683 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-12-G17 3',
mRNA sequence
Length = 512
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 310 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 369
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 370 tacagaggaagaaaatttgagaggctccatgggaa 404
>gb|BP627387.1|BP627387 BP627387 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-50-O18 3',
mRNA sequence
Length = 434
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||||| | ||| ||
Sbjct: 268 ccagtccatgtaaacaaacgttgatgagtagttgccacactttgtgtacagtaatcgatg 327
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 328 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 387
Query: 526 gaa 528
|||
Sbjct: 388 gaa 390
>gb|AF222719.1|AF222719 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase (SMO) mRNA,
partial cds
Length = 720
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 666 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 607
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 606 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 547
Query: 526 gaa 528
|||
Sbjct: 546 gaa 544
>gb|BT002780.1| Arabidopsis thaliana clone RAFL14-89-L18 (R20198) putative C-4
sterol methyl oxidase (At2g29390) mRNA, complete cds
Length = 1076
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 794 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 735
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 734 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 675
Query: 526 gaa 528
|||
Sbjct: 674 gaa 672
>gb|BT002793.1| Arabidopsis thaliana clone RAFL14-96-B14 (R20187) At1g07420 mRNA,
complete sequence
Length = 1101
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 773 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 714
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 713 tacagaggaagaaaatttgagaggctccatgggaa 679
>gb|BT005125.1| Arabidopsis thaliana clone U20198 putative C-4 sterol methyl
oxidase (At2g29390) mRNA, complete cds
Length = 814
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 729 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 670
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 669 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 610
Query: 526 gaa 528
|||
Sbjct: 609 gaa 607
>gb|AY087267.1| Arabidopsis thaliana clone 33426 mRNA, complete sequence
Length = 1126
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 804 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 745
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 744 tacagaggaagaaaatttgagaggctccatgggaa 710
>emb|BX841564.1|CNS09YF9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH62ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1051
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 293 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 352
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 353 tacagaggaagaaaatttgagaggctccatgggaa 387
>emb|BX819624.1|CNS0A9T3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1281
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 1059 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 1000
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 999 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 940
Query: 526 gaa 528
|||
Sbjct: 939 gaa 937
>emb|BX815281.1|CNS0ABC4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS49ZE01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1318
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 1001 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 942
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 941 tacagaggaagaaaatttgagaggctccatgggaa 907
>emb|BX817293.1|CNS0AB3H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL12ZC08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 606
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 241 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 182
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 181 tacagaggaagaaaatttgagaggctccatgggaa 147
>emb|BX817847.1|CNS0AB3I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZH05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1051
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 754 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 695
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 694 tacagaggaagaaaatttgagaggctccatgggaa 660
>emb|CQ769015.1| Sequence 19 from Patent WO2004007730
Length = 759
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 705 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 646
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 645 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 586
Query: 526 gaa 528
|||
Sbjct: 585 gaa 583
>gb|BT015609.1| Arabidopsis thaliana At1g07420 mRNA sequence
Length = 543
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 443 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 384
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 383 tacagaggaagaaaatttgagaggctccatgggaa 349
>gb|AF327853.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 783
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 729 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 670
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 669 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 610
Query: 526 gaa 528
|||
Sbjct: 609 gaa 607
>gb|AF346734.1| Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA, complete
cds
Length = 801
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 701 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 642
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 641 tacagaggaagaaaatttgagaggctccatgggaa 607
>ref|NM_179802.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.2 mRNA, complete
cds
Length = 1063
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 794 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 735
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 734 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 675
Query: 526 gaa 528
|||
Sbjct: 674 gaa 672
>ref|NM_100616.2| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.1 mRNA, complete
cds
Length = 1168
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 804 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 745
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 744 tacagaggaagaaaatttgagaggctccatgggaa 710
>ref|NM_201830.1| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.3 mRNA, complete
cds
Length = 1328
Score = 77.8 bits (39), Expect = 2e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 1059 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 1000
Query: 466 atggtagtcatggaagtccgagccaccgtacaggggcaggaaatttgatgggctccatgg 525
|||||||||||||||||| | || ||||| || || || ||||| || |||||||||||
Sbjct: 999 atggtagtcatggaagtcagcaccgccgtatagaggaagaaaattcgaggggctccatgg 940
Query: 526 gaa 528
|||
Sbjct: 939 gaa 937
>ref|NM_202048.1| Arabidopsis thaliana SMO2-2; C-4 methylsterol oxidase AT1G07420
(SMO2-2) transcript variant AT1G07420.2 mRNA, complete
cds
Length = 1365
Score = 77.8 bits (39), Expect = 2e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 434 tagttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccg 493
||||| || ||||||||||| |||| |||||||||||||||||||||||| | || ||
Sbjct: 1001 tagtttccggactttgtgtatagcagtcggtgatggtagtcatggaagtcagcacctcca 942
Query: 494 tacaggggcaggaaatttgatgggctccatgggaa 528
||||| || || |||||||| |||||||||||||
Sbjct: 941 tacagaggaagaaaatttgagaggctccatgggaa 907
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 73.8 bits (37), Expect = 3e-011
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 403 tcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcg 462
|||||||||||| || ||||| || || | ||||| || ||||||||||| |||| |||
Sbjct: 2279705 tcaccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcg 2279646
Query: 463 gtgatggtagtcatggaagtc 483
|||||||||||||||||||||
Sbjct: 2279645 gtgatggtagtcatggaagtc 2279625
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
complete sequence
Length = 104830
Score = 73.8 bits (37), Expect = 3e-011
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 403 tcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcg 462
|||||||||||| || ||||| || || | ||||| || ||||||||||| |||| |||
Sbjct: 64200 tcaccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcg 64259
Query: 463 gtgatggtagtcatggaagtc 483
|||||||||||||||||||||
Sbjct: 64260 gtgatggtagtcatggaagtc 64280
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 73.8 bits (37), Expect = 3e-011
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 403 tcaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcg 462
|||||||||||| || ||||| || || | ||||| || ||||||||||| |||| |||
Sbjct: 2279858 tcaccagtccatatacacaaaagttgaagagtagtttccggactttgtgtatagcagtcg 2279799
Query: 463 gtgatggtagtcatggaagtc 483
|||||||||||||||||||||
Sbjct: 2279798 gtgatggtagtcatggaagtc 2279778
>gb|AC004561.3| Arabidopsis thaliana chromosome 2 clone F16P2 map ve014, complete
sequence
Length = 131743
Score = 69.9 bits (35), Expect = 5e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
||||||||||||||||||| || || | ||||| || ||||||||||| || | ||| |
Sbjct: 48843 accagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgat 48784
Query: 465 gatggtagtcatggaagtc 483
|||||||||||||||||||
Sbjct: 48783 gatggtagtcatggaagtc 48765
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 69.9 bits (35), Expect = 5e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 405 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 464
||||||||||||||||||| || || | ||||| || ||||||||||| || | ||| |
Sbjct: 12617972 accagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgat 12618031
Query: 465 gatggtagtcatggaagtc 483
|||||||||||||||||||
Sbjct: 12618032 gatggtagtcatggaagtc 12618050
>gb|AY086287.1| Arabidopsis thaliana clone 23439 mRNA, complete sequence
Length = 1091
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 838 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 779
Query: 466 atggtagtcatggaagtc 483
||||||||||||||||||
Sbjct: 778 atggtagtcatggaagtc 761
>ref|NM_128493.2| Arabidopsis thaliana SMO2-1; C-4 methylsterol oxidase AT2G29390
(SMO2-1) transcript variant AT2G29390.1 mRNA, complete
cds
Length = 1104
Score = 67.9 bits (34), Expect = 2e-009
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 406 ccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggtg 465
|||||||||||||||||| || || | ||||| || ||||||||||| || | ||| ||
Sbjct: 838 ccagtccatgtaaacaaacgttgatgagtagttgccagactttgtgtagagtaatcgatg 779
Query: 466 atggtagtcatggaagtc 483
||||||||||||||||||
Sbjct: 778 atggtagtcatggaagtc 761
>gb|BP581099.1|BP581099 BP581099 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-30-H01 3',
mRNA sequence
Length = 414
Score = 54.0 bits (27), Expect = 3e-005
Identities = 73/86 (84%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 443 gactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtacaggggc 502
||||||||||| |||| |||||||||||||| ||||||||| |||| | ||||| ||
Sbjct: 309 gactttgtgtatagcagtcggtgatggtagt-atggaagtc--agccctcatacagagga 365
Query: 503 aggaaatttgatgggctccatgggaa 528
|| |||||||| |||||||||||||
Sbjct: 366 agaaaatttgagaggctccatgggaa 391
>gb|BP652719.1|BP652719 BP652719 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-94-C03 3',
mRNA sequence
Length = 415
Score = 50.1 bits (25), Expect = 4e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 443 gactttgtgtacagcactcggtgatggtagtcatggaagtc 483
||||||||||| || | ||| ||||||||||||||||||||
Sbjct: 299 gactttgtgtagagtaatcgatgatggtagtcatggaagtc 339
>gb|CW801524.1|CW801524 WiscDsLox493H10 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 849
Score = 46.1 bits (23), Expect = 0.007
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 443 gactttgtgtacagcactcggtgatggtagtcatggaagt 482
||||||||||| ||| |||| |||||||||| |||||||
Sbjct: 707 gactttgtgtatagcngtcggngatggtagtcntggaagt 668
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 458,280
Number of Sequences: 1013581
Number of extensions: 458280
Number of successful extensions: 40409
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39746
Number of HSP's gapped (non-prelim): 661
length of query: 584
length of database: 908,940,872
effective HSP length: 20
effective length of query: 564
effective length of database: 888,669,252
effective search space: 501209458128
effective search space used: 501209458128
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)