BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2619346.2.2
(1471 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB263792.1|CB263792 07-E9863-008-019-M02-pbl2 MPIZ-ADIS-... 44 0.068
gb|AV440021.1|AV440021 AV440021 Arabidopsis thaliana above-... 44 0.068
gb|AV549769.1|AV549769 AV549769 Arabidopsis thaliana roots ... 44 0.068
gb|AY050428.1| Arabidopsis thaliana AT5g56750/MIK19_22 mRNA... 44 0.068
gb|AY090332.1| Arabidopsis thaliana AT5g56750/MIK19_22 mRNA... 44 0.068
gb|AY087544.1| Arabidopsis thaliana clone 36495 mRNA, compl... 44 0.068
emb|BX833971.1|CNS09ZC6 Arabidopsis thaliana Full-length cD... 44 0.068
emb|BX830156.1|CNS0A1YS Arabidopsis thaliana Full-length cD... 44 0.068
emb|CQ804556.1| Sequence 967 from Patent WO2004035798 44 0.068
ref|NM_125058.2| Arabidopsis thaliana unknown protein AT5G5... 44 0.068
emb|CR401172.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.27
>gb|CB263792.1|CB263792 07-E9863-008-019-M02-pbl2 MPIZ-ADIS-008 Arabidopsis thaliana cDNA
clone MPIZp767M0219Q 5-PRIME, mRNA sequence
Length = 492
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 24 aagcctgaacctcaaccaaagc 3
>gb|AV440021.1|AV440021 AV440021 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD34e11_f 3', mRNA
sequence
Length = 600
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 504 aagcctgaacctcaaccaaagc 525
>gb|AV549769.1|AV549769 AV549769 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ102g01R 5', mRNA sequence
Length = 514
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 224 aagcctgaacctcaaccaaagc 203
>gb|AY050428.1| Arabidopsis thaliana AT5g56750/MIK19_22 mRNA, complete cds
Length = 1458
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 941 aagcctgaacctcaaccaaagc 920
>gb|AY090332.1| Arabidopsis thaliana AT5g56750/MIK19_22 mRNA, complete cds
Length = 1041
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 832 aagcctgaacctcaaccaaagc 811
>gb|AY087544.1| Arabidopsis thaliana clone 36495 mRNA, complete sequence
Length = 1457
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 941 aagcctgaacctcaaccaaagc 920
>emb|BX833971.1|CNS09ZC6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL87ZE12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1076
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 600 aagcctgaacctcaaccaaagc 579
>emb|BX830156.1|CNS0A1YS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB63ZC06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1440
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 956 aagcctgaacctcaaccaaagc 935
>emb|CQ804556.1| Sequence 967 from Patent WO2004035798
Length = 1041
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 832 aagcctgaacctcaaccaaagc 811
>ref|NM_125058.2| Arabidopsis thaliana unknown protein AT5G56750 mRNA, complete cds
Length = 1460
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 343 aagcctgaacctcaaccaaagc 364
||||||||||||||||||||||
Sbjct: 941 aagcctgaacctcaaccaaagc 920
>emb|CR401172.1| Arabidopsis thaliana T-DNA flanking sequence GK-843F10-025743,
genomic survey sequence
Length = 139
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 910 ccaaaaccagagccaaagcca 930
|||||||||||||||||||||
Sbjct: 16 ccaaaaccagagccaaagcca 36
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 742 ccaaaaccagagccaaagcca 762
|||||||||||||||||||||
Sbjct: 16 ccaaaaccagagccaaagcca 36
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 897,843
Number of Sequences: 1013581
Number of extensions: 897843
Number of successful extensions: 77607
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77575
Number of HSP's gapped (non-prelim): 32
length of query: 1471
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1450
effective length of database: 887,655,671
effective search space: 1287100722950
effective search space used: 1287100722950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)