BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591258.2.1
(819 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL751784.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.15
gb|T43879.1|T43879 7142 Lambda-PRL2 Arabidopsis thaliana cD... 42 0.15
gb|AV782400.1|AV782400 AV782400 RAFL4 Arabidopsis thaliana ... 42 0.15
gb|AV821843.1|AV821843 AV821843 RAFL4 Arabidopsis thaliana ... 42 0.15
gb|AV829598.1|AV829598 AV829598 RAFL9 Arabidopsis thaliana ... 42 0.15
gb|BU635690.1|BU635690 004G05 Infected Arabidopsis Leaf Ara... 42 0.15
gb|CF652642.1|CF652642 68-L020135-066-001-G17-SP6P MPIZ-ADI... 42 0.15
gb|CF652643.1|CF652643 68-L020135w-066-001-G17-SP6P MPIZ-AD... 42 0.15
gb|AV530593.1|AV530593 AV530593 Arabidopsis thaliana flower... 42 0.15
gb|AV539060.1|AV539060 AV539060 Arabidopsis thaliana roots ... 42 0.15
gb|AV550365.1|AV550365 AV550365 Arabidopsis thaliana roots ... 42 0.15
gb|AV550631.1|AV550631 AV550631 Arabidopsis thaliana roots ... 42 0.15
gb|AV551773.1|AV551773 AV551773 Arabidopsis thaliana roots ... 42 0.15
gb|CK119117.1|CK119117 214h16.p1 AtM1 Arabidopsis thaliana ... 42 0.15
gb|CK121692.1|CK121692 202c15.p1 AtM1 Arabidopsis thaliana ... 42 0.15
gb|AY057554.1| Arabidopsis thaliana AT4g34050/F28A23_190 mR... 42 0.15
gb|AY062630.1| Arabidopsis thaliana Phosphoglycerate dehydr... 42 0.15
gb|AY081457.1| Arabidopsis thaliana phosphoglycerate dehydr... 42 0.15
gb|AY143979.1| Arabidopsis thaliana At4g34050/F28A23_190 mR... 42 0.15
gb|AY088577.1| Arabidopsis thaliana clone 8049 mRNA, comple... 42 0.15
emb|BX826590.1|CNS0A35S Arabidopsis thaliana Full-length cD... 42 0.15
emb|BX828287.1|CNS0A315 Arabidopsis thaliana Full-length cD... 42 0.15
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.15
emb|CQ804646.1| Sequence 1057 from Patent WO2004035798 42 0.15
emb|CQ805684.1| Sequence 2095 from Patent WO2004035798 42 0.15
emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome... 42 0.15
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 42 0.15
ref|NM_119566.3| Arabidopsis thaliana O-methyltransferase/ ... 42 0.15
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.15
>emb|AL751784.1| Arabidopsis thaliana T-DNA flanking sequence GK-007F02-014809,
genomic survey sequence
Length = 386
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 179 gaagtcgatcttgtgagcaacgccggctttctc 211
>gb|T43879.1|T43879 7142 Lambda-PRL2 Arabidopsis thaliana cDNA clone 118N13T7, mRNA
sequence
Length = 390
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 40 gaagtcgatcttgtgagcaacgccggctttctc 8
>gb|AV782400.1|AV782400 AV782400 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-C19 3',
mRNA sequence
Length = 681
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 491 gaagtcgatcttgtgagcaacgccggctttctc 523
>gb|AV821843.1|AV821843 AV821843 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-C19 5',
mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 508 gaagtcgatcttgtgagcaacgccggctttctc 476
>gb|AV829598.1|AV829598 AV829598 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-48-L18 5',
mRNA sequence
Length = 578
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 507 gaagtcgatcttgtgagcaacgccggctttctc 475
>gb|BU635690.1|BU635690 004G05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 748
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 422 gaagtcgatcttgtgagcaacgccggctttctc 390
>gb|CF652642.1|CF652642 68-L020135-066-001-G17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001G171Q 5-PRIME, mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 496 gaagtcgatcttgtgagcaacgccggctttctc 464
>gb|CF652643.1|CF652643 68-L020135w-066-001-G17-SP6P MPIZ-ADIS-066 Arabidopsis thaliana
cDNA clone MPIZp2001G171Q 5-PRIME, mRNA sequence
Length = 924
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 496 gaagtcgatcttgtgagcaacgccggctttctc 464
>gb|AV530593.1|AV530593 AV530593 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB005h11F 3', mRNA sequence
Length = 455
Score = 42.1 bits (21), Expect = 0.15
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 705 ctgcagcagctgcacctcgtccggc 729
|||||||||||||||||| ||||||
Sbjct: 271 ctgcagcagctgcacctcctccggc 295
>gb|AV539060.1|AV539060 AV539060 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ126c06F 3', mRNA sequence
Length = 600
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 487 gaagtcgatcttgtgagcaacgccggctttctc 455
>gb|AV550365.1|AV550365 AV550365 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ111d01R 5', mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 483 gaagtcgatcttgtgagcaacgccggctttctc 451
>gb|AV550631.1|AV550631 AV550631 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ115b08R 5', mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 473 gaagtcgatcttgtgagcaacgccggctttctc 441
>gb|AV551773.1|AV551773 AV551773 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ130e08R 5', mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 487 gaagtcgatcttgtgagcaacgccggctttctc 455
>gb|CK119117.1|CK119117 214h16.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011H16214
5-PRIME, mRNA sequence
Length = 789
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 494 gaagtcgatcttgtgagcaacgccggctttctc 462
>gb|CK121692.1|CK121692 202c15.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C15202
5-PRIME, mRNA sequence
Length = 763
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 491 gaagtcgatcttgtgagcaacgccggctttctc 459
>gb|AY057554.1| Arabidopsis thaliana AT4g34050/F28A23_190 mRNA, complete cds
Length = 1026
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 506 gaagtcgatcttgtgagcaacgccggctttctc 474
>gb|AY062630.1| Arabidopsis thaliana Phosphoglycerate dehydrogenase - like protein
(At4g34050) mRNA, complete cds
Length = 999
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 508 gaagtcgatcttgtgagcaacgccggctttctc 476
>gb|AY081457.1| Arabidopsis thaliana phosphoglycerate dehydrogenase-like protein
(At4g34050) mRNA, complete cds
Length = 815
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 441 gaagtcgatcttgtgagcaacgccggctttctc 409
>gb|AY143979.1| Arabidopsis thaliana At4g34050/F28A23_190 mRNA, complete cds
Length = 780
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 441 gaagtcgatcttgtgagcaacgccggctttctc 409
>gb|AY088577.1| Arabidopsis thaliana clone 8049 mRNA, complete sequence
Length = 1033
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 510 gaagtcgatcttgtgagcaacgccggctttctc 478
>emb|BX826590.1|CNS0A35S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB44ZH02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1024
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 484 gaagtcgatcttgtgagcaacgccggctttctc 452
>emb|BX828287.1|CNS0A315 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH71ZC07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1003
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 484 gaagtcgatcttgtgagcaacgccggctttctc 452
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 12224239 gaagtcgatcttgtgagcaacgccggctttctc 12224207
>emb|CQ804646.1| Sequence 1057 from Patent WO2004035798
Length = 780
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 441 gaagtcgatcttgtgagcaacgccggctttctc 409
>emb|CQ805684.1| Sequence 2095 from Patent WO2004035798
Length = 780
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 441 gaagtcgatcttgtgagcaacgccggctttctc 409
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project)
Length = 94091
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 14961 gaagtcgatcttgtgagcaacgccggctttctc 14929
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 145010 gaagtcgatcttgtgagcaacgccggctttctc 144978
>ref|NM_119566.3| Arabidopsis thaliana O-methyltransferase/
S-adenosylmethionine-dependent methyltransferase
AT4G34050 transcript variant AT4G34050.1 mRNA, complete
cds
Length = 1091
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 509 gaagtcgatcttgtgagcaacgccggctttctc 477
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 512 gaagtcgatcttgtgcgccacgccggccttctc 544
||||||||||||||| || |||||||| |||||
Sbjct: 16311457 gaagtcgatcttgtgagcaacgccggctttctc 16311425
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 178,413
Number of Sequences: 1013581
Number of extensions: 178413
Number of successful extensions: 14601
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14446
Number of HSP's gapped (non-prelim): 155
length of query: 819
length of database: 908,940,872
effective HSP length: 20
effective length of query: 799
effective length of database: 888,669,252
effective search space: 710046732348
effective search space used: 710046732348
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)