BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2591131.2.1
         (596 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AK175875.1|  Arabidopsis thaliana mRNA for expansin-like...    40   0.42 
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    40   0.42 
emb|AL132975.1|ATT22E16  Arabidopsis thaliana DNA chromosome...    40   0.42 
ref|NM_115407.2|  Arabidopsis thaliana ATEXPA16 (ARABIDOPSIS...    40   0.42 
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    40   0.42 
>dbj|AK175875.1| Arabidopsis thaliana mRNA for expansin-like protein, complete cds,
           clone: RAFL22-51-G11
          Length = 1115

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 actgccagttctggccccagttcc 340
           ||||||||||||| ||||||||||
Sbjct: 726 actgccagttctgtccccagttcc 703
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 317      actgccagttctggccccagttcc 340
                ||||||||||||| ||||||||||
Sbjct: 20538662 actgccagttctgtccccagttcc 20538685
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16
          Length = 103240

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 317   actgccagttctggccccagttcc 340
             ||||||||||||| ||||||||||
Sbjct: 57686 actgccagttctgtccccagttcc 57709
>ref|NM_115407.2| Arabidopsis thaliana ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)
           AT3G55500 (ATEXPA16) mRNA, complete cds
          Length = 827

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 actgccagttctggccccagttcc 340
           ||||||||||||| ||||||||||
Sbjct: 690 actgccagttctgtccccagttcc 667
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 40.1 bits (20), Expect = 0.42
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 317      actgccagttctggccccagttcc 340
                ||||||||||||| ||||||||||
Sbjct: 20586189 actgccagttctgtccccagttcc 20586212
  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,957
Number of Sequences: 1013581
Number of extensions: 135957
Number of successful extensions: 8262
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8217
Number of HSP's gapped (non-prelim): 45
length of query: 596
length of database: 908,940,872
effective HSP length: 20
effective length of query: 576
effective length of database: 888,669,252
effective search space: 511873489152
effective search space used: 511873489152
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)