BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.5
(1033 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV555801.1|AV555801 AV555801 Arabidopsis thaliana green ... 100 9e-019
gb|AY064032.1| Arabidopsis thaliana putative signal peptida... 100 9e-019
gb|AY096703.1| Arabidopsis thaliana putative signal peptida... 100 9e-019
gb|AY084305.1| Arabidopsis thaliana clone 103157 mRNA, comp... 100 9e-019
ref|NM_104138.2| Arabidopsis thaliana peptidase AT1G52600 m... 100 9e-019
gb|AV563979.1|AV563979 AV563979 Arabidopsis thaliana green ... 94 6e-017
dbj|AK220581.1| Arabidopsis thaliana mRNA for hypothetical ... 92 2e-016
gb|H76629.1|H76629 18334 Lambda-PRL2 Arabidopsis thaliana c... 88 4e-015
gb|AV563247.1|AV563247 AV563247 Arabidopsis thaliana green ... 82 2e-013
gb|H76949.1|H76949 17380 Lambda-PRL2 Arabidopsis thaliana c... 76 1e-011
gb|AV824350.1|AV824350 AV824350 RAFL6 Arabidopsis thaliana ... 76 1e-011
gb|H76216.1|H76216 17921 Lambda-PRL2 Arabidopsis thaliana c... 74 5e-011
gb|AI994694.1|AI994694 701499287 A. thaliana, Ohio State cl... 70 8e-010
gb|R90653.1|R90653 17008 Lambda-PRL2 Arabidopsis thaliana c... 64 5e-008
gb|BP611804.1|BP611804 BP611804 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 48 0.003
gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6... 46 0.012
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 46 0.012
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 46 0.012
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.19
gb|AY086118.1| Arabidopsis thaliana clone 21563 mRNA, compl... 42 0.19
emb|BX826032.1|CNS0A69G Arabidopsis thaliana Full-length cD... 42 0.19
dbj|AB017071.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.19
gb|BT015149.1| Arabidopsis thaliana At3g15710 gene, complet... 42 0.19
gb|BT015660.1| Arabidopsis thaliana At3g15710 gene, complet... 42 0.19
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.19
ref|NM_112441.3| Arabidopsis thaliana peptidase AT3G15710 m... 42 0.19
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.19
>gb|AV555801.1|AV555801 AV555801 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ026b05F 3', mRNA sequence
Length = 563
Score = 99.6 bits (50), Expect = 9e-019
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 430 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 489
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| |||||||||||
Sbjct: 490 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatccccccttttaaaa 549
Query: 697 ccaggctccatgct 710
|| || ||||||||
Sbjct: 550 ccgggttccatgct 563
>gb|AY064032.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600)
mRNA, complete cds
Length = 825
Score = 99.6 bits (50), Expect = 9e-019
Identities = 188/234 (80%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 388 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 329
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 328 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatcccccctcttaaaa 269
Query: 697 ccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaact 756
|| || |||||||| || ||||| || || || || || || ||||| || |||| |
Sbjct: 268 ccgggttccatgcttccagagagaacaaccaccaccggagattcgcttccagtgacacac 209
Query: 757 atcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatg 810
|||||| | ||||||||||| || ||||| || |||||||| || || ||||||
Sbjct: 208 atcaaagctttccatatgatcaaagcagatgtgacaatcatccctagactgatg 155
>gb|AY096703.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600)
mRNA, complete cds
Length = 574
Score = 99.6 bits (50), Expect = 9e-019
Identities = 188/234 (80%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 302 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 243
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 242 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatcccccctcttaaaa 183
Query: 697 ccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaact 756
|| || |||||||| || ||||| || || || || || || ||||| || |||| |
Sbjct: 182 ccgggttccatgcttccagagagaacaaccaccaccggagattcgcttccagtgacacac 123
Query: 757 atcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatg 810
|||||| | ||||||||||| || ||||| || |||||||| || || ||||||
Sbjct: 122 atcaaagctttccatatgatcaaagcagatgtgacaatcatccctagactgatg 69
>gb|AY084305.1| Arabidopsis thaliana clone 103157 mRNA, complete sequence
Length = 691
Score = 99.6 bits (50), Expect = 9e-019
Identities = 188/234 (80%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 388 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 329
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 328 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatcccccctcttaaaa 269
Query: 697 ccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaact 756
|| || |||||||| || ||||| || || || || || || ||||| || |||| |
Sbjct: 268 ccgggttccatgcttccagagagaacaaccaccaccggagattcgcttccagtgacacac 209
Query: 757 atcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatg 810
|||||| | ||||||||||| || ||||| || |||||||| || || ||||||
Sbjct: 208 atcaaagctttccatatgatcaaagcagatgtgacaatcatccctagactgatg 155
>ref|NM_104138.2| Arabidopsis thaliana peptidase AT1G52600 mRNA, complete cds
Length = 818
Score = 99.6 bits (50), Expect = 9e-019
Identities = 188/234 (80%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 389 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 330
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 329 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatcccccctcttaaaa 270
Query: 697 ccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaact 756
|| || |||||||| || ||||| || || || || || || ||||| || |||| |
Sbjct: 269 ccgggttccatgcttccagagagaacaaccaccaccggagattcgcttccagtgacacac 210
Query: 757 atcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatg 810
|||||| | ||||||||||| || ||||| || |||||||| || || ||||||
Sbjct: 209 atcaaagctttccatatgatcaaagcagatgtgacaatcatccctagactgatg 156
>gb|AV563979.1|AV563979 AV563979 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ197a01F 3', mRNA sequence
Length = 609
Score = 93.7 bits (47), Expect = 6e-017
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 429 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 488
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 489 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatcccccctcttaaaa 548
Query: 697 ccaggctccatgctacccgagag 719
|| || |||||||| || |||||
Sbjct: 549 ccgggttccatgcttccagagag 571
>dbj|AK220581.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
clone: RAFL16-87-D04
Length = 783
Score = 91.7 bits (46), Expect = 2e-016
Identities = 187/234 (79%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 388 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 329
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| |||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 328 tcacctgctcgaaccgggtctttactcatgtgcaagaacaatatatcccccctcttaaaa 269
Query: 697 ccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaact 756
|| || |||||||| || ||||| || || || || || || ||||| || |||| |
Sbjct: 268 ccgggttccatgcttccagagagaacaaccaccaccggagattcgcttccagtgacacac 209
Query: 757 atcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatg 810
|||||| | ||||||||||| || ||||| || |||||||| || || ||||||
Sbjct: 208 atcaaagctttccatatgatcaaagcagatgtgacaatcatccctagactgatg 155
>gb|H76629.1|H76629 18334 Lambda-PRL2 Arabidopsis thaliana cDNA clone 199L5T7, mRNA
sequence
Length = 577
Score = 87.7 bits (44), Expect = 4e-015
Identities = 118/143 (82%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 188 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 129
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| ||| ||||| ||||| |||||
Sbjct: 128 tcacctgctcgaatcgggtctttactcatgtgcaagnacaatatatcccccctcttaaaa 69
Query: 697 ccaggctccatgctacccgagag 719
|| || |||||||| || |||||
Sbjct: 68 ccgggttccatgcttccagagag 46
>gb|AV563247.1|AV563247 AV563247 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ183h06F 3', mRNA sequence
Length = 543
Score = 81.8 bits (41), Expect = 2e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 430 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 489
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccct 689
|| |||| ||||| || ||||| ||||| ||||| |||| ||||| |||||
Sbjct: 490 tcacctgctcgaatcgggtctttactcatgtgcaagaacaatatatcccccct 542
>gb|H76949.1|H76949 17380 Lambda-PRL2 Arabidopsis thaliana cDNA clone 199L4T7, mRNA
sequence
Length = 517
Score = 75.8 bits (38), Expect = 1e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| | ||||||||| ||||||||||||| |||
Sbjct: 188 accttaatgacacgatggacaatgggaatatnacgaccatcaacattgaaaacaanaatt 129
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| ||| ||||| ||||| |||||
Sbjct: 128 tcacctgctcgaatcgggtctttactcatgtgcaagnacaatatatcccccctcttaaaa 69
Query: 697 ccaggctccatgctacccgagag 719
|| || |||||||| || |||||
Sbjct: 68 ccgggttccatgcttccagagag 46
>gb|AV824350.1|AV824350 AV824350 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-68-I04 5',
mRNA sequence
Length = 415
Score = 75.8 bits (38), Expect = 1e-011
Identities = 186/235 (79%), Gaps = 1/235 (0%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatc-gacattgaaaacaactat 635
|||||||| || || ||| |||| ||||| ||||||||||| |||||||||| |||| ||
Sbjct: 390 accttaatgacacgatggncaatgggaatatcacgaccatcggacattgaaancaacaat 331
Query: 636 ttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaa 695
||| |||| | ||| || ||||| ||||| ||||| |||| ||||| ||||| |||||
Sbjct: 330 ttcacctgctcnaatcgggtctttactcatgtgcaagaacaatatatcccccctcttaaa 271
Query: 696 tccaggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaac 755
|| || |||||||| || ||||| || || || || || || ||||| || |||| |
Sbjct: 270 accgggttccatgcttccagagagaacaaccaccaccggagattcgcttccagtgacaca 211
Query: 756 tatcaaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatg 810
|||||| | ||||||||||| || ||||| || |||||||| || || ||||||
Sbjct: 210 catcaaagctttccatatgatcaaagcagatgtgacaatcatccctagactgatg 156
>gb|H76216.1|H76216 17921 Lambda-PRL2 Arabidopsis thaliana cDNA clone 197L4T7, mRNA
sequence
Length = 441
Score = 73.8 bits (37), Expect = 5e-011
Identities = 116/143 (81%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| | ||||||||| ||||||||||||| |||
Sbjct: 188 accttaatgacacgatggacaatgggaatatnacgaccatcaacattgaaaacaanaatt 129
Query: 637 tctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaat 696
|| |||| ||||| || ||||| ||||| ||||| ||| ||||| ||||| |||||
Sbjct: 128 tcacctgctcgaatcgggtctttactcatgtgcaaggacaatatatcccccctcttaaaa 69
Query: 697 ccaggctccatgctacccgagag 719
|| || |||||||| || |||||
Sbjct: 68 ccgggttccatgcttccagagag 46
>gb|AI994694.1|AI994694 701499287 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701499287, mRNA sequence
Length = 477
Score = 69.9 bits (35), Expect = 8e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct: 85 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaacaatt 26
Query: 637 tctcctg 643
|| ||||
Sbjct: 25 tcacctg 19
>gb|R90653.1|R90653 17008 Lambda-PRL2 Arabidopsis thaliana cDNA clone 191C4T7, mRNA
sequence
Length = 512
Score = 63.9 bits (32), Expect = 5e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatt 636
|||||||| || || |||||||| ||||| ||||||||||| ||||||||||||| |||
Sbjct: 85 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaacaanaatt 26
Query: 637 tctcctg 643
|| ||||
Sbjct: 25 tcacctg 19
>gb|BP611804.1|BP611804 BP611804 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-87-D04 3',
mRNA sequence
Length = 436
Score = 56.0 bits (28), Expect = 1e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 577 accttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaa 628
|||||||| || || |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 385 accttaatgacacgatggacaatgggaatatcacgaccatcaacattgaaaa 436
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1010 ccgcgtacctgcccgggcggccgc 1033
||||||||||||||||||||||||
Sbjct: 274 ccgcgtacctgcccgggcggccgc 297
>gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence
Length = 117737
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| |||||||||||||| ||||| |||| ||||| || ||||| ||||| ||||| |
Sbjct: 54061 catcaacattgaaaacaacaatttcacctgctcgaatcgggtctttactcatgtgcaaga 54120
Query: 674 aca 676
|||
Sbjct: 54121 aca 54123
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| |||||||||||||| ||||| |||| ||||| || ||||| ||||| ||||| |
Sbjct: 3951012 catcaacattgaaaacaacaatttcacctgctcgaatcgggtctttactcatgtgcaaga 3950953
Query: 674 aca 676
|||
Sbjct: 3950952 aca 3950950
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| |||||||||||||| ||||| |||| ||||| || ||||| ||||| ||||| |
Sbjct: 19595417 catcaacattgaaaacaacaatttcacctgctcgaatcgggtctttactcatgtgcaaga 19595358
Query: 674 aca 676
|||
Sbjct: 19595357 aca 19595355
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1013 cgtacctgcccgggcggccgc 1033
|||||||||||||||||||||
Sbjct: 435 cgtacctgcccgggcggccgc 455
>gb|AY086118.1| Arabidopsis thaliana clone 21563 mRNA, complete sequence
Length = 820
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 596 gtcatgataatagtaacccatccaacata 568
>emb|BX826032.1|CNS0A69G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL80ZE04 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 855
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 579 gtcatgataatagtaacccatccaacata 551
>dbj|AB017071.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MSJ11
Length = 81370
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 33084 gtcatgataatagtaacccatccaacata 33112
>gb|BT015149.1| Arabidopsis thaliana At3g15710 gene, complete cds
Length = 805
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 556 gtcatgataatagtaacccatccaacata 528
>gb|BT015660.1| Arabidopsis thaliana At3g15710 gene, complete cds
Length = 543
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 473 gtcatgataatagtaacccatccaacata 445
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 5311304 gtcatgataatagtaacccatccaacata 5311332
>ref|NM_112441.3| Arabidopsis thaliana peptidase AT3G15710 mRNA, complete cds
Length = 872
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 406 gtcatgataattgtaacccagccaacata 434
||||||||||| |||||||| ||||||||
Sbjct: 596 gtcatgataatagtaacccatccaacata 568
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 406 gtcatgataattgtaacccagccaacata 434
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Sbjct: 5323739 gtcatgataatagtaacccatccaacata 5323767
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 393,074
Number of Sequences: 1013581
Number of extensions: 393074
Number of successful extensions: 28305
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27675
Number of HSP's gapped (non-prelim): 616
length of query: 1033
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1013
effective length of database: 888,669,252
effective search space: 900221952276
effective search space used: 900221952276
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)