BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.4
(870 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV563979.1|AV563979 AV563979 Arabidopsis thaliana green ... 100 8e-019
gb|AY064032.1| Arabidopsis thaliana putative signal peptida... 100 8e-019
gb|AY096703.1| Arabidopsis thaliana putative signal peptida... 100 8e-019
gb|AY084305.1| Arabidopsis thaliana clone 103157 mRNA, comp... 100 8e-019
ref|NM_104138.2| Arabidopsis thaliana peptidase AT1G52600 m... 100 8e-019
gb|H76629.1|H76629 18334 Lambda-PRL2 Arabidopsis thaliana c... 94 5e-017
gb|AV555801.1|AV555801 AV555801 Arabidopsis thaliana green ... 92 2e-016
dbj|AK220581.1| Arabidopsis thaliana mRNA for hypothetical ... 92 2e-016
gb|H76949.1|H76949 17380 Lambda-PRL2 Arabidopsis thaliana c... 76 1e-011
gb|AV824350.1|AV824350 AV824350 RAFL6 Arabidopsis thaliana ... 76 1e-011
gb|H76216.1|H76216 17921 Lambda-PRL2 Arabidopsis thaliana c... 74 4e-011
gb|AV563247.1|AV563247 AV563247 Arabidopsis thaliana green ... 66 1e-008
gb|AI994694.1|AI994694 701499287 A. thaliana, Ohio State cl... 54 4e-005
gb|R90653.1|R90653 17008 Lambda-PRL2 Arabidopsis thaliana c... 48 0.003
gb|BH792546.1|BH792546 SALK_064689.50.90.x Arabidopsis thal... 42 0.16
gb|BP624442.1|BP624442 BP624442 RAFL17 Arabidopsis thaliana... 42 0.16
gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6... 42 0.16
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.16
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.16
>gb|AV563979.1|AV563979 AV563979 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ197a01F 3', mRNA sequence
Length = 609
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 574 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 515
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || ||||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 514 agtaaagacccgattcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 455
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 454 cccattgtccatcgtgtcattaaggt 429
>gb|AY064032.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600)
mRNA, complete cds
Length = 825
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 243 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 302
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || ||||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 303 agtaaagacccgattcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 362
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 363 cccattgtccatcgtgtcattaaggt 388
>gb|AY096703.1| Arabidopsis thaliana putative signal peptidase subunit (At1g52600)
mRNA, complete cds
Length = 574
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 157 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 216
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || ||||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 217 agtaaagacccgattcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 276
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 277 cccattgtccatcgtgtcattaaggt 302
>gb|AY084305.1| Arabidopsis thaliana clone 103157 mRNA, complete sequence
Length = 691
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 243 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 302
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || ||||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 303 agtaaagacccgattcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 362
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 363 cccattgtccatcgtgtcattaaggt 388
>ref|NM_104138.2| Arabidopsis thaliana peptidase AT1G52600 mRNA, complete cds
Length = 818
Score = 99.6 bits (50), Expect = 8e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 244 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 303
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || ||||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 304 agtaaagacccgattcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 363
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 364 cccattgtccatcgtgtcattaaggt 389
>gb|H76629.1|H76629 18334 Lambda-PRL2 Arabidopsis thaliana cDNA clone 199L5T7, mRNA
sequence
Length = 577
Score = 93.7 bits (47), Expect = 5e-017
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| ||| ||||| |||
Sbjct: 43 gttctctctggaagcatggaacccggttttaagaggggggatatattgtncttgcacatg 102
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || ||||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 103 agtaaagacccgattcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 162
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 163 cccattgtccatcgtgtcattaaggt 188
>gb|AV555801.1|AV555801 AV555801 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ026b05F 3', mRNA sequence
Length = 563
Score = 91.7 bits (46), Expect = 2e-016
Identities = 112/134 (83%)
Strand = Plus / Minus
Query: 30 agcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagcaaagatcct 89
||||||||||| || ||||||||||| ||||| |||| ||||| ||||| ||||| ||
Sbjct: 563 agcatggaacccggttttaaaaggggggatatattgttcttgcacatgagtaaagacccg 504
Query: 90 attcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattccaattgtccac 149
||||| |||| ||||| |||||||||||| | ||||| ||||| ||||| ||||||||
Sbjct: 503 attcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatattcccattgtccat 444
Query: 150 cgcgtaattaaggt 163
|| || ||||||||
Sbjct: 443 cgtgtcattaaggt 430
>dbj|AK220581.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
clone: RAFL16-87-D04
Length = 783
Score = 91.7 bits (46), Expect = 2e-016
Identities = 121/146 (82%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 243 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 302
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaatt 137
|| ||||| || |||| |||| ||||| |||||||||||| | ||||| ||||| |||
Sbjct: 303 agtaaagacccggttcgagcaggtgaaattgttgttttcaatgttgatggtcgtgatatt 362
Query: 138 ccaattgtccaccgcgtaattaaggt 163
|| |||||||| || || ||||||||
Sbjct: 363 cccattgtccatcgtgtcattaaggt 388
>gb|H76949.1|H76949 17380 Lambda-PRL2 Arabidopsis thaliana cDNA clone 199L4T7, mRNA
sequence
Length = 517
Score = 75.8 bits (38), Expect = 1e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 21 ctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagc 80
|||||||| ||||||||||| || ||||| ||||| ||||| ||| ||||| |||||
Sbjct: 46 ctctctggaagcatggaacccggttttaagaggggggatatattgtncttgcacatgagt 105
Query: 81 aaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattcca 140
||||| || ||||| |||| ||||| ||||||||||| | ||||| ||| | |||||
Sbjct: 106 aaagacccgattcgagcaggtgaaattnttgttttcaatgttgatggtcgtnatattccc 165
Query: 141 attgtccaccgcgtaattaaggt 163
|||||||| || || ||||||||
Sbjct: 166 attgtccatcgtgtcattaaggt 188
>gb|AV824350.1|AV824350 AV824350 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-68-I04 5',
mRNA sequence
Length = 415
Score = 75.8 bits (38), Expect = 1e-011
Identities = 120/147 (81%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatg 77
||||||||||| ||||||||||| || ||||| ||||| ||||| |||| ||||| |||
Sbjct: 244 gttctctctggaagcatggaacccggttttaagaggggggatatattgttcttgcacatg 303
Query: 78 agcaaagatcctattcgcacaggagaaatagttgttttcaatat-cgatggccgtgaaat 136
|| ||||| || ||| | |||| ||||| |||| ||||||| | |||||| ||||| ||
Sbjct: 304 agtaaagacccgattngagcaggtgaaattgttgntttcaatgtccgatggtcgtgatat 363
Query: 137 tccaattgtccaccgcgtaattaaggt 163
||| |||| ||| || || ||||||||
Sbjct: 364 tcccattgnccatcgtgtcattaaggt 390
>gb|H76216.1|H76216 17921 Lambda-PRL2 Arabidopsis thaliana cDNA clone 197L4T7, mRNA
sequence
Length = 441
Score = 73.8 bits (37), Expect = 4e-011
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 21 ctctctggtagcatggaacctggatttaaaaggggtgatatcctgtttttgcatatgagc 80
|||||||| ||||||||||| || ||||| ||||| ||||| ||| ||||| |||||
Sbjct: 46 ctctctggaagcatggaacccggttttaagaggggggatatattgtccttgcacatgagt 105
Query: 81 aaagatcctattcgcacaggagaaatagttgttttcaatatcgatggccgtgaaattcca 140
||||| || ||||| |||| ||||| ||||||||||| | ||||| ||| | |||||
Sbjct: 106 aaagacccgattcgagcaggtgaaattnttgttttcaatgttgatggtcgtnatattccc 165
Query: 141 attgtccaccgcgtaattaaggt 163
|||||||| || || ||||||||
Sbjct: 166 attgtccatcgtgtcattaaggt 188
>gb|AV563247.1|AV563247 AV563247 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ183h06F 3', mRNA sequence
Length = 543
Score = 65.9 bits (33), Expect = 1e-008
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 51 aggggtgatatcctgtttttgcatatgagcaaagatcctattcgcacaggagaaatagtt 110
||||| ||||| |||| ||||| ||||| ||||| || ||||| |||| ||||| |||
Sbjct: 542 aggggggatatattgttcttgcacatgagtaaagacccgattcgagcaggtgaaattgtt 483
Query: 111 gttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaattaaggt 163
||||||||| | ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 482 gttttcaatgttgatggtcgtgatattcccattgtccatcgtgtcattaaggt 430
>gb|AI994694.1|AI994694 701499287 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701499287, mRNA sequence
Length = 477
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 97 caggagaaatagttgttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaa 156
|||| ||||| |||||||||||| | ||||| ||||| ||||| |||||||| || || |
Sbjct: 19 caggtgaaattgttgttttcaatgttgatggtcgtgatattcccattgtccatcgtgtca 78
Query: 157 ttaaggt 163
|||||||
Sbjct: 79 ttaaggt 85
>gb|R90653.1|R90653 17008 Lambda-PRL2 Arabidopsis thaliana cDNA clone 191C4T7, mRNA
sequence
Length = 512
Score = 48.1 bits (24), Expect = 0.003
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 97 caggagaaatagttgttttcaatatcgatggccgtgaaattccaattgtccaccgcgtaa 156
|||| ||||| ||||||||||| | ||||| ||||| ||||| |||||||| || || |
Sbjct: 19 caggtgaaattnttgttttcaatgttgatggtcgtgatattcccattgtccatcgtgtca 78
Query: 157 ttaaggt 163
|||||||
Sbjct: 79 ttaaggt 85
Score = 46.1 bits (23), Expect = 0.010
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 204 aaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctc 263
|||||||||||||| | ||| |||||| |||| | ||||| | || |||||||||||
Sbjct: 126 aaaggtgacaataactatggagatgacagacttctgtatgctgaaggacagctttggctt 185
Query: 264 cagcaacatcacattatgggacgtgctgtgggctaccttccatatgttggctggattaca 323
|| | |||||| || ||||| |||||||| || | | | || |||||||| ||| | ||
Sbjct: 186 catcgacatcatataatgggtcgtgctgtcgggttcttgccttatgttggatgggtgact 245
Query: 324 attatcatgac 334
|||||||||||
Sbjct: 246 attatcatgac 256
>gb|BH792546.1|BH792546 SALK_064689.50.90.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_064689.50.90.x,
DNA sequence
Length = 117
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggg 54
||||||||||| ||||||||||| || ||||| ||||
Sbjct: 74 gttctctctggaagcatggaacccggttttaagaggg 38
>gb|BP624442.1|BP624442 BP624442 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-40-E08 3',
mRNA sequence
Length = 425
Score = 42.1 bits (21), Expect = 0.16
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 204 aaaggtgacaataattttggggatgaccgactattatatgcacatgggcagctttggctc 263
|||||||||||||| | ||| |||||| |||| | ||||| | || |||||||||||
Sbjct: 387 aaaggtgacaataactatggagatgacagacttctttatgctgaaggacagctttggctt 328
Query: 264 cagcaacatcacattatgggacgtgctgt 292
|| | |||||| || ||||| ||||||||
Sbjct: 327 catcgacatcatataatgggtcgtgctgt 299
>gb|AC008016.2|F6D8 Arabidopsis thaliana chromosome 1 BAC F6D8 sequence, complete sequence
Length = 117737
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggg 54
||||||||||| ||||||||||| || ||||| ||||
Sbjct: 54317 gttctctctggaagcatggaacccggttttaagaggg 54281
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggg 54
||||||||||| ||||||||||| || ||||| ||||
Sbjct: 3950756 gttctctctggaagcatggaacccggttttaagaggg 3950792
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.16
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 18 gttctctctggtagcatggaacctggatttaaaaggg 54
||||||||||| ||||||||||| || ||||| ||||
Sbjct: 19595161 gttctctctggaagcatggaacccggttttaagaggg 19595197
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 407,821
Number of Sequences: 1013581
Number of extensions: 407821
Number of successful extensions: 28989
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28584
Number of HSP's gapped (non-prelim): 392
length of query: 870
length of database: 908,940,872
effective HSP length: 20
effective length of query: 850
effective length of database: 888,669,252
effective search space: 755368864200
effective search space used: 755368864200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)