BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV803829.1|AV803829 AV803829 RAFL9 Arabidopsis thaliana ... 52 2e-004
gb|AY060556.1| Arabidopsis thaliana At1g52150/F5F19_21 mRNA... 52 2e-004
emb|AX505646.1| Sequence 341 from Patent WO0216655 52 2e-004
emb|AJ439449.1|ATH439449 Arabidopsis thaliana mRNA for home... 52 2e-004
ref|NM_104096.2| Arabidopsis thaliana ATHB-15 (INCURVATA 4)... 52 2e-004
ref|NM_179464.1| Arabidopsis thaliana ATHB-15 (INCURVATA 4)... 52 2e-004
gb|Z46707.1|Z46707 ATTS4369 Ra147.1 Arabidopsis thaliana cD... 42 0.16
gb|BE524166.1|BE524166 M46G10STM Arabidopsis developing see... 42 0.16
gb|AV816036.1|AV816036 AV816036 RAFL9 Arabidopsis thaliana ... 42 0.16
gb|AV535435.1|AV535435 AV535435 Arabidopsis thaliana flower... 42 0.16
gb|AV546349.1|AV546349 AV546349 Arabidopsis thaliana roots ... 42 0.16
gb|AV548912.1|AV548912 AV548912 Arabidopsis thaliana roots ... 42 0.16
gb|CF773335.1|CF773335 AG_FSL_15G09 Arabidopsis ag-1 35S:AG... 42 0.16
gb|BP613588.1|BP613588 BP613588 RAFL16 Arabidopsis thaliana... 42 0.16
gb|DR751573.1|DR751573 68-L022148-065-007-D09-SeLB MPIZ-ADI... 42 0.16
gb|DR751598.1|DR751598 52-L022148-065-007-D07-SeLB MPIZ-ADI... 42 0.16
emb|AL049915.1|T16I18 Arabidopsis thaliana clone T16I18, **... 42 0.16
gb|AY099631.1| Arabidopsis thaliana HD-zip transcription fa... 42 0.16
emb|AX505386.1| Sequence 81 from Patent WO0216655 42 0.16
gb|BT008798.1| Arabidopsis thaliana At4g32880 gene, complet... 42 0.16
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.16
emb|AJ441292.1|ATH441292 Arabidopsis thaliana mRNA for home... 42 0.16
emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosom... 42 0.16
emb|Z50851.1|ATHB8GN A.thaliana athb-8 gene 42 0.16
ref|NM_119441.3| Arabidopsis thaliana ATHB-8 (HOMEOBOX GENE... 42 0.16
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.16
>gb|AV803829.1|AV803829 AV803829 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-36-P06 3',
mRNA sequence
Length = 410
Score = 52.0 bits (26), Expect = 2e-004
Identities = 122/154 (79%)
Strand = Plus / Plus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 226 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 285
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 286 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 345
Query: 461 ccaggccggcttggttggcaaaggtgaacacggg 494
| || || || ||||| ||||| ||||| |||||
Sbjct: 346 caagtcccgcctggtttgcaaatgtgaagacggg 379
>gb|AY060556.1| Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds
Length = 3415
Score = 52.0 bits (26), Expect = 2e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 3091 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 3032
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 3031 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 2972
Query: 461 ccaggccggcttggttggcaaaggtgaacacggg 494
| || || || ||||| ||||| ||||| |||||
Sbjct: 2971 caagtcccgcctggtttgcaaatgtgaagacggg 2938
>emb|AX505646.1| Sequence 341 from Patent WO0216655
Length = 2511
Score = 52.0 bits (26), Expect = 2e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 2374 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 2315
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 2314 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 2255
Query: 461 ccaggccggcttggttggcaaaggtgaacacggg 494
| || || || ||||| ||||| ||||| |||||
Sbjct: 2254 caagtcccgcctggtttgcaaatgtgaagacggg 2221
>emb|AJ439449.1|ATH439449 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein
(ATHB-15 gene)
Length = 2511
Score = 52.0 bits (26), Expect = 2e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 2374 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 2315
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 2314 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 2255
Query: 461 ccaggccggcttggttggcaaaggtgaacacggg 494
| || || || ||||| ||||| ||||| |||||
Sbjct: 2254 caagtcccgcctggtttgcaaatgtgaagacggg 2221
>ref|NM_104096.2| Arabidopsis thaliana ATHB-15 (INCURVATA 4); DNA binding /
transcription factor AT1G52150 (ATHB-15) transcript
variant AT1G52150.1 mRNA, complete cds
Length = 3430
Score = 52.0 bits (26), Expect = 2e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 3091 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 3032
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 3031 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 2972
Query: 461 ccaggccggcttggttggcaaaggtgaacacggg 494
| || || || ||||| ||||| ||||| |||||
Sbjct: 2971 caagtcccgcctggtttgcaaatgtgaagacggg 2938
>ref|NM_179464.1| Arabidopsis thaliana ATHB-15 (INCURVATA 4); DNA binding /
transcription factor AT1G52150 (ATHB-15) transcript
variant AT1G52150.2 mRNA, complete cds
Length = 3433
Score = 52.0 bits (26), Expect = 2e-004
Identities = 122/154 (79%)
Strand = Plus / Minus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 3094 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 3035
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 3034 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 2975
Query: 461 ccaggccggcttggttggcaaaggtgaacacggg 494
| || || || ||||| ||||| ||||| |||||
Sbjct: 2974 caagtcccgcctggtttgcaaatgtgaagacggg 2941
>gb|Z46707.1|Z46707 ATTS4369 Ra147.1 Arabidopsis thaliana cDNA clone RAT7E10 3', mRNA
sequence
Length = 252
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 271 ttccacgccaccgcctgctcgtacgacaccggccgccccatgctcgacacaca 323
|||||| || |||| ||||| ||||| ||||| | |||||||||||||||||
Sbjct: 187 ttccacaccgccgcttgctcatacgaaaccggtctgcccatgctcgacacaca 239
>gb|BE524166.1|BE524166 M46G10STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M46G10 5', mRNA sequence
Length = 365
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 341 acgcgaagccctgttgcataatcttaggg 369
||||||||||||||||||| |||| ||||
Sbjct: 35 acgcgaagccctgttgcatgatctgaggg 7
>gb|AV816036.1|AV816036 AV816036 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-B12 3',
mRNA sequence
Length = 423
Score = 42.1 bits (21), Expect = 0.16
Identities = 96/121 (79%)
Strand = Plus / Plus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 292 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 351
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 352 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 411
Query: 461 c 461
|
Sbjct: 412 c 412
>gb|AV535435.1|AV535435 AV535435 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB096c10F 3', mRNA sequence
Length = 561
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 348 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 392
>gb|AV546349.1|AV546349 AV546349 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL12e01F 3', mRNA sequence
Length = 409
Score = 42.1 bits (21), Expect = 0.16
Identities = 96/121 (79%)
Strand = Plus / Plus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 289 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 348
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 349 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 408
Query: 461 c 461
|
Sbjct: 409 c 409
>gb|AV548912.1|AV548912 AV548912 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL64f03F 3', mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.16
Identities = 96/121 (79%)
Strand = Plus / Plus
Query: 341 acgcgaagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgt 400
||||||||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||
Sbjct: 289 acgcgaagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgt 348
Query: 401 cgtcaaggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgt 460
| |||| |||||||| | |||||||| || ||||||| | || |||||||||||||
Sbjct: 349 catcaaatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgt 408
Query: 461 c 461
|
Sbjct: 409 c 409
>gb|CF773335.1|CF773335 AG_FSL_15G09 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 15G09, mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.16
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 346 aagccctgttgcataatcttagggtactcggtgcagagcgccttcctgccatcgtcgtca 405
|||||||||||||| |||| ||| |||| | ||| || | ||| || |||| ||| |||
Sbjct: 308 aagccctgttgcatgatctgtgggaactcagagcaaagagtctttcttccattgtcatca 249
Query: 406 aggatcttctcaagggagatgtcctggagagcaatcagcgtcgtctccagcatgtccagg 465
| |||||||| | |||||||| || ||||||| | || |||||||||||||| ||
Sbjct: 248 aatatcttctctaaagagatgtcttgaagagcaactaatgtagtctccagcatgtcaagt 189
Query: 466 ccggcttggttggcaaaggtgaacacggg 494
|| || ||||| ||||| ||||| |||||
Sbjct: 188 cccgcctggtttgcaaatgtgaagacggg 160
>gb|BP613588.1|BP613588 BP613588 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-93-K11 3',
mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 378 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 422
>gb|DR751573.1|DR751573 68-L022148-065-007-D09-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-D09, mRNA sequence
Length = 925
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 333 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 377
>gb|DR751598.1|DR751598 52-L022148-065-007-D07-SeLB MPIZ-ADIS-065f Arabidopsis thaliana
cDNA clone 007-D07, mRNA sequence
Length = 928
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 333 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 377
>emb|AL049915.1|T16I18 Arabidopsis thaliana clone T16I18, *** SEQUENCING IN PROGRESS ***
Length = 52094
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 46991 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 47035
>gb|AY099631.1| Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880)
mRNA, complete cds
Length = 3004
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 2645 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 2601
>emb|AX505386.1| Sequence 81 from Patent WO0216655
Length = 2502
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 2259 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 2215
>gb|BT008798.1| Arabidopsis thaliana At4g32880 gene, complete cds
Length = 2502
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 2259 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 2215
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 11776724 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 11776768
>emb|AJ441292.1|ATH441292 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8
(hb-8 gene)
Length = 2502
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 2259 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 2215
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78
Length = 198669
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 85700 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 85744
>emb|Z50851.1|ATHB8GN A.thaliana athb-8 gene
Length = 5286
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 4784 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 4740
>ref|NM_119441.3| Arabidopsis thaliana ATHB-8 (HOMEOBOX GENE 8); DNA binding /
transcription factor AT4G32880 (ATHB-8) mRNA, complete
cds
Length = 3005
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 2645 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 2601
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.16
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 444 cgtcgtctccagcatgtccaggccggcttggttggcaaaggtgaa 488
|||||||||||||||||| | || |||||||| ||||| |||||
Sbjct: 15863947 cgtcgtctccagcatgtctaaaccagcttggttcgcaaatgtgaa 15863991
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 243,164
Number of Sequences: 1013581
Number of extensions: 243164
Number of successful extensions: 16354
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 16172
Number of HSP's gapped (non-prelim): 182
length of query: 887
length of database: 908,940,872
effective HSP length: 20
effective length of query: 867
effective length of database: 888,669,252
effective search space: 770476241484
effective search space used: 770476241484
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)