BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX839097.1|BX839097 BX839097 Arabidopsis thaliana Adult ... 66 1e-008
gb|BX840350.1|BX840350 BX840350 Arabidopsis thaliana Hormon... 66 1e-008
gb|BX840398.1|BX840398 BX840398 Arabidopsis thaliana Hormon... 66 1e-008
emb|AX464574.1| Sequence 2 from Patent WO0202798 66 1e-008
emb|AX464577.1| Sequence 5 from Patent WO0202798 66 1e-008
emb|AX464580.1| Sequence 8 from Patent WO0202798 66 1e-008
emb|AX506042.1| Sequence 737 from Patent WO0216655 66 1e-008
gb|AY089156.1| Arabidopsis thaliana clone 39613 mRNA, compl... 66 1e-008
emb|BX822129.1|CNS0A727 Arabidopsis thaliana Full-length cD... 66 1e-008
emb|BX824460.1|CNS0A6WL Arabidopsis thaliana Full-length cD... 66 1e-008
dbj|AB026657.1| Arabidopsis thaliana genomic DNA, chromosom... 66 1e-008
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 66 1e-008
emb|AJ242647.1|ATH242647 Arabidopsis thaliana CM1 gene for ... 66 1e-008
emb|Z26519.1|ATCHMUT A.thaliana mRNA for chorismate mutase 66 1e-008
ref|NM_113844.3| Arabidopsis thaliana CM1; chorismate mutas... 66 1e-008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 66 1e-008
gb|T46455.1|T46455 9718 Lambda-PRL2 Arabidopsis thaliana cD... 50 7e-004
gb|AF131219.1|AF131219 Arabidopsis thaliana chorismate muta... 50 7e-004
emb|AX464576.1| Sequence 4 from Patent WO0202798 50 7e-004
emb|AX464582.1| Sequence 10 from Patent WO0202798 50 7e-004
gb|BT005306.1| Arabidopsis thaliana At1g69370 mRNA, complet... 50 7e-004
dbj|AK117860.1| Arabidopsis thaliana At1g69370 mRNA for put... 50 7e-004
ref|NM_105604.2| Arabidopsis thaliana CM3 (CHORISMATE MUTAS... 50 7e-004
gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome II... 46 0.010
gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BA... 44 0.041
gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BA... 44 0.041
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 44 0.041
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.041
>gb|BX839097.1|BX839097 BX839097 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS95ZC11 5PRIM, mRNA
sequence
Length = 1025
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 405 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 464
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 465 gatcctactgcttttgacatggatggttt 493
>gb|BX840350.1|BX840350 BX840350 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH49ZE03 5PRIM,
mRNA sequence
Length = 1044
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 441 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 500
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 501 gatcctactgcttttgacatggatggttt 529
>gb|BX840398.1|BX840398 BX840398 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH61ZC01 5PRIM,
mRNA sequence
Length = 977
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 348 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 407
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 408 gatcctactgcttttgacatggatggttt 436
>emb|AX464574.1| Sequence 2 from Patent WO0202798
Length = 1207
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 292 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 351
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 352 gatcctactgcttttgacatggatggttt 380
>emb|AX464577.1| Sequence 5 from Patent WO0202798
Length = 5099
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 3467 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 3526
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 3527 gatcctactgcttttgacatggatggttt 3555
>emb|AX464580.1| Sequence 8 from Patent WO0202798
Length = 1207
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 916 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 857
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 856 gatcctactgcttttgacatggatggttt 828
>emb|AX506042.1| Sequence 737 from Patent WO0216655
Length = 1005
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 280 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 339
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 340 gatcctactgcttttgacatggatggttt 368
>gb|AY089156.1| Arabidopsis thaliana clone 39613 mRNA, complete sequence
Length = 1274
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 366 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 425
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 426 gatcctactgcttttgacatggatggttt 454
>emb|BX822129.1|CNS0A727 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB15ZB12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1329
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 456 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 515
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 516 gatcctactgcttttgacatggatggttt 544
>emb|BX824460.1|CNS0A6WL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH4ZG08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1265
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 349 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 408
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 409 gatcctactgcttttgacatggatggttt 437
>dbj|AB026657.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXO21
Length = 77401
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 11411 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 11352
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 11351 gatcctactgcttttgacatggatggttt 11323
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 11087948 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 11087889
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 11087888 gatcctactgcttttgacatggatggttt 11087860
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 408 atatagttagagaaactgaaaag 430
|||||||||||||||||||||||
Sbjct: 1272298 atatagttagagaaactgaaaag 1272320
>emb|AJ242647.1|ATH242647 Arabidopsis thaliana CM1 gene for plastidic chorismate mutase, exons
1-6
Length = 5099
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 3467 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 3526
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 3527 gatcctactgcttttgacatggatggttt 3555
>emb|Z26519.1|ATCHMUT A.thaliana mRNA for chorismate mutase
Length = 1207
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 292 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 351
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 352 gatcctactgcttttgacatggatggttt 380
>ref|NM_113844.3| Arabidopsis thaliana CM1; chorismate mutase AT3G29200 (CM1) mRNA,
complete cds
Length = 1370
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 456 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 515
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 516 gatcctactgcttttgacatggatggttt 544
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 65.9 bits (33), Expect = 1e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 299 gacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatacatat 358
|||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 11167001 gacagcattatatttgggctattggagagagccaagtactgttacaatgctgatacttat 11166942
Query: 359 gatagcaatgctttccacatggatggttt 387
||| | |||||| |||||||||||||
Sbjct: 11166941 gatcctactgcttttgacatggatggttt 11166913
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 408 atatagttagagaaactgaaaag 430
|||||||||||||||||||||||
Sbjct: 1276325 atatagttagagaaactgaaaag 1276347
>gb|T46455.1|T46455 9718 Lambda-PRL2 Arabidopsis thaliana cDNA clone 145F17T7, mRNA
sequence
Length = 465
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 81 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 140
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 141 gtacaagagtcctgatgagca 161
>gb|AF131219.1|AF131219 Arabidopsis thaliana chorismate mutase 3 (CM3) mRNA, complete cds
Length = 1217
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 481 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 540
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 541 gtacaagagtcctgatgagca 561
>emb|AX464576.1| Sequence 4 from Patent WO0202798
Length = 1217
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 481 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 540
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 541 gtacaagagtcctgatgagca 561
>emb|AX464582.1| Sequence 10 from Patent WO0202798
Length = 1217
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 737 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 678
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 677 gtacaagagtcctgatgagca 657
>gb|BT005306.1| Arabidopsis thaliana At1g69370 mRNA, complete cds
Length = 951
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 339 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 398
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 399 gtacaagagtcctgatgagca 419
>dbj|AK117860.1| Arabidopsis thaliana At1g69370 mRNA for putative chorismate mutase,
complete cds, clone: RAFL19-02-D09
Length = 1143
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 355 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 414
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 415 gtacaagagtcctgatgagca 435
>ref|NM_105604.2| Arabidopsis thaliana CM3 (CHORISMATE MUTASE 3); chorismate mutase
AT1G69370 (CM3) mRNA, complete cds
Length = 1261
Score = 50.1 bits (25), Expect = 7e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggag 450
||||||||| ||||| | ||| || ||||||||||||||||| || ||| |||| | ||
Sbjct: 481 aggatctttagttgagtttatggtcagagaaactgaaaagcttcacgcaaaggtggacag 540
Query: 451 atacaagagcccagatgagca 471
|||||||| || ||||||||
Sbjct: 541 gtacaagagtcctgatgagca 561
>gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence,
complete sequence
Length = 95310
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 408 atatagttagagaaactgaaaag 430
|||||||||||||||||||||||
Sbjct: 54672 atatagttagagaaactgaaaag 54694
>gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23O10 genomic sequence, complete
sequence
Length = 93802
Score = 44.1 bits (22), Expect = 0.041
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagct 432
||||||||| ||||| | ||| || |||||||||||||||||
Sbjct: 16314 aggatctttagttgagtttatggtcagagaaactgaaaagct 16273
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete
sequence
Length = 107214
Score = 44.1 bits (22), Expect = 0.041
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagct 432
||||||||| ||||| | ||| || |||||||||||||||||
Sbjct: 23915 aggatctttagttgagtttatggtcagagaaactgaaaagct 23956
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 44.1 bits (22), Expect = 0.041
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagct 432
||||||||| ||||| | ||| || |||||||||||||||||
Sbjct: 10322790 aggatctttagttgagtttatggtcagagaaactgaaaagct 10322831
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.041
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 391 aggatctttggttgaatatatagttagagaaactgaaaagct 432
||||||||| ||||| | ||| || |||||||||||||||||
Sbjct: 26084257 aggatctttagttgagtttatggtcagagaaactgaaaagct 26084298
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 443,968
Number of Sequences: 1013581
Number of extensions: 443968
Number of successful extensions: 32514
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31409
Number of HSP's gapped (non-prelim): 1105
length of query: 892
length of database: 908,940,872
effective HSP length: 20
effective length of query: 872
effective length of database: 888,669,252
effective search space: 774919587744
effective search space used: 774919587744
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)