BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2494085.2.4
(645 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW847915.1|CW847915 GT19655.Ds3.07.29.2004.jx82.857 Arab... 42 0.12
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.12
emb|AL161515.2|ATCHRIV27 Arabidopsis thaliana DNA chromosom... 42 0.12
emb|AL161831.1|ATT25P22 Arabidopsis thaliana DNA chromosome... 42 0.12
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.12
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 40 0.46
emb|AX509290.1| Sequence 3985 from Patent WO0216655 40 0.46
emb|AX652288.1| Sequence 2158 from Patent WO03000898 40 0.46
gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis ... 40 0.46
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.46
>gb|CW847915.1|CW847915 GT19655.Ds3.07.29.2004.jx82.857 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT19655, DNA sequence
Length = 857
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 158 atattatttaatattttaatt 178
|||||||||||||||||||||
Sbjct: 708 atattatttaatattttaatt 688
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 158 atattatttaatattttaatt 178
|||||||||||||||||||||
Sbjct: 1976073 atattatttaatattttaatt 1976053
>emb|AL161515.2|ATCHRIV27 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 27
Length = 197394
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 158 atattatttaatattttaatt 178
|||||||||||||||||||||
Sbjct: 80974 atattatttaatattttaatt 80954
>emb|AL161831.1|ATT25P22 Arabidopsis thaliana DNA chromosome 4, BAC clone T25P22 (ESSA project)
Length = 97876
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 158 atattatttaatattttaatt 178
|||||||||||||||||||||
Sbjct: 33816 atattatttaatattttaatt 33796
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 158 atattatttaatattttaatt 178
|||||||||||||||||||||
Sbjct: 6063354 atattatttaatattttaatt 6063334
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 160 attatttaatattttaattc 179
||||||||||||||||||||
Sbjct: 2866217 attatttaatattttaattc 2866198
>emb|AX509290.1| Sequence 3985 from Patent WO0216655
Length = 2000
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 160 attatttaatattttaattc 179
||||||||||||||||||||
Sbjct: 944 attatttaatattttaattc 925
>emb|AX652288.1| Sequence 2158 from Patent WO03000898
Length = 2000
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 160 attatttaatattttaattc 179
||||||||||||||||||||
Sbjct: 944 attatttaatattttaattc 925
>gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 110514
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 attatttaatattttaattc 179
||||||||||||||||||||
Sbjct: 76792 attatttaatattttaattc 76811
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 160 attatttaatattttaattc 179
||||||||||||||||||||
Sbjct: 2866398 attatttaatattttaattc 2866379
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 294,155
Number of Sequences: 1013581
Number of extensions: 294155
Number of successful extensions: 35951
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34832
Number of HSP's gapped (non-prelim): 1119
length of query: 645
length of database: 908,940,872
effective HSP length: 20
effective length of query: 625
effective length of database: 888,669,252
effective search space: 555418282500
effective search space used: 555418282500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)