BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2478075.2.1
         (807 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF296833.1|F7C8  Arabidopsis thaliana BAC F7C8                  44   0.037
dbj|BA000015.5|  Arabidopsis thaliana DNA, chromosome 5, com...    44   0.037
gb|DQ056684.1|  Arabidopsis thaliana putative beta-1,3-gluca...    44   0.037
ref|NM_122063.1|  Arabidopsis thaliana hydrolase, hydrolyzin...    44   0.037
ref|NC_003076.4|  Arabidopsis thaliana chromosome 5, complet...    44   0.037

>gb|AF296833.1|F7C8 Arabidopsis thaliana BAC F7C8
          Length = 70169

 Score = 44.1 bits (22), Expect = 0.037
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 340   tggtggtgtcggagaccggctggccgtcggccgg 373
             ||||||||||||||||||| ||||| || |||||
Sbjct: 59109 tggtggtgtcggagaccgggtggccctctgccgg 59142



>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
          Length = 23810767

 Score = 44.1 bits (22), Expect = 0.037
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 340     tggtggtgtcggagaccggctggccgtcggccgg 373
               ||||||||||||||||||| ||||| || |||||
Sbjct: 6668690 tggtggtgtcggagaccgggtggccctctgccgg 6668723



>gb|DQ056684.1| Arabidopsis thaliana putative beta-1,3-glucanase (At5g20560) mRNA,
           complete cds
          Length = 1014

 Score = 44.1 bits (22), Expect = 0.037
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 340 tggtggtgtcggagaccggctggccgtcggccgg 373
           ||||||||||||||||||| ||||| || |||||
Sbjct: 791 tggtggtgtcggagaccgggtggccctctgccgg 824



>ref|NM_122063.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
           AT5G20560 mRNA, complete cds
          Length = 1014

 Score = 44.1 bits (22), Expect = 0.037
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 340 tggtggtgtcggagaccggctggccgtcggccgg 373
           ||||||||||||||||||| ||||| || |||||
Sbjct: 791 tggtggtgtcggagaccgggtggccctctgccgg 824



>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
          Length = 26992728

 Score = 44.1 bits (22), Expect = 0.037
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 340     tggtggtgtcggagaccggctggccgtcggccgg 373
               ||||||||||||||||||| ||||| || |||||
Sbjct: 6956160 tggtggtgtcggagaccgggtggccctctgccgg 6956193



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 315,080
Number of Sequences: 1013581
Number of extensions: 315080
Number of successful extensions: 21841
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21610
Number of HSP's gapped (non-prelim): 231
length of query: 807
length of database: 908,940,872
effective HSP length: 20
effective length of query: 787
effective length of database: 888,669,252
effective search space: 699382701324
effective search space used: 699382701324
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)