BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2455862.2.1
         (712 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC011437.6|ATAC011437  Arabidopsis thaliana chromosome II...    46   0.008
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    46   0.008
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    46   0.008

>gb|AC011437.6|ATAC011437 Arabidopsis thaliana chromosome III BAC F7O18 genomic sequence,
             complete sequence
          Length = 95310

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 598   ttctttctctctgttttttcttt 620
             |||||||||||||||||||||||
Sbjct: 48571 ttctttctctctgttttttcttt 48549



>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 598     ttctttctctctgttttttcttt 620
               |||||||||||||||||||||||
Sbjct: 1266197 ttctttctctctgttttttcttt 1266175



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 598     ttctttctctctgttttttcttt 620
               |||||||||||||||||||||||
Sbjct: 1270224 ttctttctctctgttttttcttt 1270202



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 300,198
Number of Sequences: 1013581
Number of extensions: 300198
Number of successful extensions: 26028
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25712
Number of HSP's gapped (non-prelim): 316
length of query: 712
length of database: 908,940,872
effective HSP length: 20
effective length of query: 692
effective length of database: 888,669,252
effective search space: 614959122384
effective search space used: 614959122384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)