BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448655.2.1
(682 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY087876.1| Arabidopsis thaliana clone 39135 mRNA, compl... 105 1e-020
gb|AY035393.1| Arabidopsis thaliana putative sterol 4-alpha... 105 1e-020
ref|NM_118404.2| Arabidopsis thaliana SMO1-2 (STEROL C4-MET... 105 1e-020
gb|AV557159.1|AV557159 AV557159 Arabidopsis thaliana green ... 94 4e-017
gb|BP582076.1|BP582076 BP582076 RAFL14 Arabidopsis thaliana... 94 4e-017
gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mR... 94 4e-017
gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol met... 94 4e-017
gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, compl... 94 4e-017
emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cD... 94 4e-017
emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cD... 94 4e-017
gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase... 94 4e-017
ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA... 94 4e-017
gb|AV558731.1|AV558731 AV558731 Arabidopsis thaliana green ... 82 1e-013
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 72 1e-010
emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome... 72 1e-010
emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosom... 72 1e-010
ref|NM_118403.1| Arabidopsis thaliana SMO1-3 (STEROL 4-ALPH... 72 1e-010
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 72 1e-010
gb|BP566762.1|BP566762 BP566762 RAFL14 Arabidopsis thaliana... 70 5e-010
emb|BX827501.1|CNS0A2TZ Arabidopsis thaliana Full-length cD... 70 5e-010
emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome... 70 5e-010
emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosom... 70 5e-010
gb|AY323213.1| Arabidopsis thaliana sterol-4-alpha methyl o... 64 3e-008
gb|BP584937.1|BP584937 BP584937 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|AV558038.1|AV558038 AV558038 Arabidopsis thaliana green ... 48 0.002
emb|AL936318.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.008
gb|BP599531.1|BP599531 BP599531 RAFL16 Arabidopsis thaliana... 40 0.49
>gb|AY087876.1| Arabidopsis thaliana clone 39135 mRNA, complete sequence
Length = 1299
Score = 105 bits (53), Expect = 1e-020
Identities = 152/185 (82%)
Strand = Plus / Plus
Query: 155 gaggctatcgagacacatagcggctttgatttcccattcaccccgacaaagtatattcca 214
||||||||||| || |||||||| | ||||||||||| | | ||||||||| ||||||
Sbjct: 756 gaggctatcgaaactcatagcggatatgatttcccatggtctctgacaaagtacattcca 815
Query: 215 ttctatggaggagcagaataccatgactatcatcattatgtaggaggccagagccaaagc 274
|| ||||| ||||| || || ||||| || ||||| || || ||||| || ||||| ||
Sbjct: 816 ttttatggtggagctgagtatcatgattaccatcactacgttggaggacaaagccagagt 875
Query: 275 aattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggttacaga 334
|| |||||||| ||||| |||||||| |||||| | ||||| ||||| ||||||||| ||
Sbjct: 876 aactttgcttcagtttttacttactgcgattacatctatggaactgataaaggttaccga 935
Query: 335 ttcca 339
|||||
Sbjct: 936 ttcca 940
>gb|AY035393.1| Arabidopsis thaliana putative sterol 4-alpha-methyl-oxidase mRNA,
complete cds
Length = 900
Score = 105 bits (53), Expect = 1e-020
Identities = 152/185 (82%)
Strand = Plus / Plus
Query: 155 gaggctatcgagacacatagcggctttgatttcccattcaccccgacaaagtatattcca 214
||||||||||| || |||||||| | ||||||||||| | | ||||||||| ||||||
Sbjct: 637 gaggctatcgaaactcatagcggatatgatttcccatggtctctgacaaagtacattcca 696
Query: 215 ttctatggaggagcagaataccatgactatcatcattatgtaggaggccagagccaaagc 274
|| ||||| ||||| || || ||||| || ||||| || || ||||| || ||||| ||
Sbjct: 697 ttttatggtggagctgagtatcatgattaccatcactacgttggaggacaaagccagagt 756
Query: 275 aattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggttacaga 334
|| |||||||| ||||| |||||||| |||||| | ||||| ||||| ||||||||| ||
Sbjct: 757 aactttgcttcagtttttacttactgcgattacatctatggaactgataaaggttaccga 816
Query: 335 ttcca 339
|||||
Sbjct: 817 ttcca 821
>ref|NM_118404.2| Arabidopsis thaliana SMO1-2 (STEROL C4-METHYL OXIDASE); catalytic
AT4G22756 (SMO1-2) mRNA, complete cds
Length = 1298
Score = 105 bits (53), Expect = 1e-020
Identities = 152/185 (82%)
Strand = Plus / Plus
Query: 155 gaggctatcgagacacatagcggctttgatttcccattcaccccgacaaagtatattcca 214
||||||||||| || |||||||| | ||||||||||| | | ||||||||| ||||||
Sbjct: 755 gaggctatcgaaactcatagcggatatgatttcccatggtctctgacaaagtacattcca 814
Query: 215 ttctatggaggagcagaataccatgactatcatcattatgtaggaggccagagccaaagc 274
|| ||||| ||||| || || ||||| || ||||| || || ||||| || ||||| ||
Sbjct: 815 ttttatggtggagctgagtatcatgattaccatcactacgttggaggacaaagccagagt 874
Query: 275 aattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggttacaga 334
|| |||||||| ||||| |||||||| |||||| | ||||| ||||| ||||||||| ||
Sbjct: 875 aactttgcttcagtttttacttactgcgattacatctatggaactgataaaggttaccga 934
Query: 335 ttcca 339
|||||
Sbjct: 935 ttcca 939
>gb|AV557159.1|AV557159 AV557159 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ061h02F 3', mRNA sequence
Length = 571
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 516 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 457
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 456 acgtactgtgattacatttatggaactgacaagggttacagattcca 410
>gb|BP582076.1|BP582076 BP582076 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-34-L17 3',
mRNA sequence
Length = 471
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 459 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 400
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 399 acgtactgtgattacatttatggaactgacaagggttacagattcca 353
>gb|AY125499.1| Arabidopsis thaliana AT4g12110/F16J13_180 mRNA, complete cds
Length = 1315
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 861 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 920
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 921 acgtactgtgattacatttatggaactgacaagggttacagattcca 967
>gb|BT000546.1| Arabidopsis thaliana putative C-4 sterol methyl oxidase
(At4g12110/F16J13_180) mRNA, complete cds
Length = 897
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 715 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 774
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 775 acgtactgtgattacatttatggaactgacaagggttacagattcca 821
>gb|AY087412.1| Arabidopsis thaliana clone 35110 mRNA, complete sequence
Length = 1441
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 862 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 921
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 922 acgtactgtgattacatttatggaactgacaagggttacagattcca 968
>emb|BX841551.1|CNS09YFV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS95ZE04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1013
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 782 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 841
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 842 acgtactgtgattacatttatggaactgacaagggttacagattcca 888
>emb|BX828013.1|CNS0A3D8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH45ZA11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1317
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 834 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 893
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 894 acgtactgtgattacatttatggaactgacaagggttacagattcca 940
>gb|AF039199.1| Arabidopsis thaliana sterol-4-methyl-oxidase mRNA, complete cds
Length = 1469
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 828 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 887
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 888 acgtactgtgattacatttatggaactgacaagggttacagattcca 934
>ref|NM_117281.1| Arabidopsis thaliana SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1);
catalytic AT4G12110 (SMO1-1) mRNA, complete cds
Length = 1441
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 863 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 922
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 923 acgtactgtgattacatttatggaactgacaagggttacagattcca 969
>gb|AV558731.1|AV558731 AV558731 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ105a02F 3', mRNA sequence
Length = 501
Score = 81.8 bits (41), Expect = 1e-013
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 235 ccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcac 294
||||||||||||||| || || ||||| || || |||||||| || ||||| || |||||
Sbjct: 449 ccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttcac 390
Query: 295 ttactgtgattacttatatggcactgacaaaggttacagattcca 339
||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 389 ggactgtgattacatttatggaactgacaagggttacagattcca 345
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 3168353 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 3168412
Query: 293 acttactgtgattacttatatggcactgacaa 324
|| |||||||||||| | ||||| ||||||||
Sbjct: 3168413 acgtactgtgattacatttatggaactgacaa 3168444
Score = 69.9 bits (35), Expect = 5e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || || ||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 7865197 catgactaccatcactacgttggaggacaaagccagagcaactttgcttcggttttcact 7865138
Query: 296 tactgtgattacttatatggcactgacaaag 326
||||| |||||| | ||||| ||||| ||||
Sbjct: 7865137 tactgcgattacatttatggaactgataaag 7865107
>emb|AL049638.1|ATF16J13 Arabidopsis thaliana DNA chromosome 4, BAC clone F16J13 (ESSA project)
Length = 107600
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 88939 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 88998
Query: 293 acttactgtgattacttatatggcactgacaa 324
|| |||||||||||| | ||||| ||||||||
Sbjct: 88999 acgtactgtgattacatttatggaactgacaa 89030
>emb|AL161533.2|ATCHRIV33 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33
Length = 190026
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 112769 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 112828
Query: 293 acttactgtgattacttatatggcactgacaa 324
|| |||||||||||| | ||||| ||||||||
Sbjct: 112829 acgtactgtgattacatttatggaactgacaa 112860
>ref|NM_118403.1| Arabidopsis thaliana SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE);
catalytic AT4G22753 (SMO1-3) mRNA, complete cds
Length = 876
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || || ||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 706 catgactaccatcactacgttggaggacaaagccagagcaactttgcttcggttttcact 765
Query: 296 tactgtgattacttatatggcactgacaaagg 327
||||| |||||| | ||||| ||||| |||||
Sbjct: 766 tactgcgattacatttatggaactgataaagg 797
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 71.9 bits (36), Expect = 1e-010
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 7255615 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 7255674
Query: 293 acttactgtgattacttatatggcactgacaa 324
|| |||||||||||| | ||||| ||||||||
Sbjct: 7255675 acgtactgtgattacatttatggaactgacaa 7255706
Score = 69.9 bits (35), Expect = 5e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || || ||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 11952440 catgactaccatcactacgttggaggacaaagccagagcaactttgcttcggttttcact 11952381
Query: 296 tactgtgattacttatatggcactgacaaag 326
||||| |||||| | ||||| ||||| ||||
Sbjct: 11952380 tactgcgattacatttatggaactgataaag 11952350
>gb|BP566762.1|BP566762 BP566762 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-55-D19 3',
mRNA sequence
Length = 425
Score = 69.9 bits (35), Expect = 5e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| || ||||| || ||||| |||||||||||| | ||||| |||||||| |||
Sbjct: 423 caaagcaacttcgcttcagtgttcacgtactgtgattacatttatggaactgacaagggt 364
Query: 329 tacagattcca 339
|||||||||||
Sbjct: 363 tacagattcca 353
>emb|BX827501.1|CNS0A2TZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS65ZD06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1248
Score = 69.9 bits (35), Expect = 5e-010
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||||||||||| || || ||||| || || |||||||| || ||||| || |||
Sbjct: 781 taccatgactatcatcactacgttggaggacaaagtcaaagcaacttcgcttcagtgttc 840
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattcca 339
|| ||||||||| || |||| |||||||| ||||||||||||||
Sbjct: 841 acgtactgtgatcacacccatggaactgacaagggttacagattcca 887
>emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII
project)
Length = 89350
Score = 69.9 bits (35), Expect = 5e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || || ||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 45467 catgactaccatcactacgttggaggacaaagccagagcaactttgcttcggttttcact 45408
Query: 296 tactgtgattacttatatggcactgacaaag 326
||||| |||||| | ||||| ||||| ||||
Sbjct: 45407 tactgcgattacatttatggaactgataaag 45377
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
Length = 199577
Score = 69.9 bits (35), Expect = 5e-010
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || || ||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 189136 catgactaccatcactacgttggaggacaaagccagagcaactttgcttcggttttcact 189077
Query: 296 tactgtgattacttatatggcactgacaaag 326
||||| |||||| | ||||| ||||| ||||
Sbjct: 189076 tactgcgattacatttatggaactgataaag 189046
>gb|AY323213.1| Arabidopsis thaliana sterol-4-alpha methyl oxidase mRNA, partial
cds
Length = 820
Score = 63.9 bits (32), Expect = 3e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 236 catgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttcact 295
|||||||| ||||| || || ||||| || ||||| ||||| |||||||| |||||||||
Sbjct: 706 catgactaccatcactacgttggaggacaaagccagagcaactttgcttcggttttcact 765
Query: 296 tactgtgattac 307
||||| ||||||
Sbjct: 766 tactgcgattac 777
>gb|BP584937.1|BP584937 BP584937 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-48-H14 3',
mRNA sequence
Length = 446
Score = 54.0 bits (27), Expect = 3e-005
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 269 caaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaaaggt 328
|||||||| || ||||| || ||||| |||||||||||| | ||||| |||||| | |||
Sbjct: 422 caaagcaacttcgcttcagtgttcacgtactgtgattacatttatggaactgac-agggt 364
Query: 329 tacagattcca 339
|||||||||||
Sbjct: 363 tacagattcca 353
>gb|AV558038.1|AV558038 AV558038 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ087c05F 3', mRNA sequence
Length = 487
Score = 48.1 bits (24), Expect = 0.002
Identities = 90/112 (80%)
Strand = Plus / Minus
Query: 233 taccatgactatcatcattatgtaggaggccagagccaaagcaattttgcttctgttttc 292
||||||||| |||||| || || ||||| || || ||||||| || ||||| || |||
Sbjct: 386 taccatgaccatcatccctacgttggagggcaaagtcaaagcaccttcgcttcagtgttc 327
Query: 293 acttactgtgattacttatatggcactgacaaaggttacagattccacaaaa 344
|| |||||||| | | ||||| |||||||| |||||||||||||| ||||
Sbjct: 326 acggcctgtgattccatttatggaactgacaagggttacagattccaaaaaa 275
>emb|AL936318.1| Arabidopsis thaliana T-DNA flanking sequence GK-047G05-016081,
genomic survey sequence
Length = 644
Score = 46.1 bits (23), Expect = 0.008
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 270 aaagcaattttgcttctgttttcacttactgtgattacttatatggcactgacaa 324
||||||| || ||||| || ||||| |||||||||||| | ||||| ||||||||
Sbjct: 644 aaagcaacttcgcttcagtgttcacgtactgtgattacatttatggaactgacaa 590
>gb|BP599531.1|BP599531 BP599531 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-07-K04 3',
mRNA sequence
Length = 356
Score = 40.1 bits (20), Expect = 0.49
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 296 tactgtgattacttatatggcactgacaaaggttacagattcca 339
|||||||||||| | ||||| |||||| | ||||||||||||||
Sbjct: 355 tactgtgattacatttatggaactgac-agggttacagattcca 313
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 278,503
Number of Sequences: 1013581
Number of extensions: 278503
Number of successful extensions: 20852
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20335
Number of HSP's gapped (non-prelim): 515
length of query: 682
length of database: 908,940,872
effective HSP length: 20
effective length of query: 662
effective length of database: 888,669,252
effective search space: 588299044824
effective search space used: 588299044824
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)