BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2441100.2.1
         (646 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AF001535.1|ATAF001535  Arabidopsis thaliana chromosome IV...    40   0.46 
emb|AJ270058.1|  Arabidopsis thaliana DNA chromosome 4, shor...    40   0.46 
emb|AL161493.2|ATCHRIV5  Arabidopsis thaliana DNA chromosome...    40   0.46 
gb|AF001308.1|ATAF001308  Arabidopsis thaliana BAC T10M13 fr...    40   0.46 
ref|NC_003075.3|  Arabidopsis thaliana chromosome 4, complet...    40   0.46 
>gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV cosmid AGAA, complete sequence
          Length = 27502

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   aacacaaacgaagttttgtt 505
             ||||||||||||||||||||
Sbjct: 26039 aacacaaacgaagttttgtt 26020
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
          Length = 3052119

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    aacacaaacgaagttttgtt 505
              ||||||||||||||||||||
Sbjct: 924078 aacacaaacgaagttttgtt 924059
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5
          Length = 198220

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    aacacaaacgaagttttgtt 505
              ||||||||||||||||||||
Sbjct: 154138 aacacaaacgaagttttgtt 154119
>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to
             11.6 cM, complete sequence
          Length = 105654

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   aacacaaacgaagttttgtt 505
             ||||||||||||||||||||
Sbjct: 51534 aacacaaacgaagttttgtt 51515
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
          Length = 18585042

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    aacacaaacgaagttttgtt 505
              ||||||||||||||||||||
Sbjct: 925269 aacacaaacgaagttttgtt 925250
  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,811
Number of Sequences: 1013581
Number of extensions: 318811
Number of successful extensions: 26260
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25959
Number of HSP's gapped (non-prelim): 301
length of query: 646
length of database: 908,940,872
effective HSP length: 20
effective length of query: 626
effective length of database: 888,669,252
effective search space: 556306951752
effective search space used: 556306951752
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)