BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441058.2.1
(1000 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV810335.1|AV810335 AV810335 RAFL9 Arabidopsis thaliana ... 78 3e-012
gb|BP577991.1|BP577991 BP577991 RAFL14 Arabidopsis thaliana... 78 3e-012
gb|BP578916.1|BP578916 BP578916 RAFL14 Arabidopsis thaliana... 78 3e-012
gb|AY062521.1| Arabidopsis thaliana putative GDP-mannose py... 78 3e-012
gb|BT000123.1| Arabidopsis thaliana putative GDP-mannose py... 78 3e-012
emb|BX820503.1|CNS0A9MF Arabidopsis thaliana Full-length cD... 78 3e-012
ref|NM_126494.4| Arabidopsis thaliana nucleotidyltransferas... 78 3e-012
gb|AV792679.1|AV792679 AV792679 RAFL7 Arabidopsis thaliana ... 48 0.003
gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I... 48 0.003
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.003
gb|CB260970.1|CB260970 46-E9519-012-003-L06-T7R MPIZ-ADIS-0... 46 0.012
gb|AF372967.1|AF372967 Arabidopsis thaliana At1g74910/F9E10... 46 0.012
gb|AY124853.1| Arabidopsis thaliana At1g74910/F9E10_24 mRNA... 46 0.012
emb|BX815044.1|CNS0AE4A Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX815312.1|CNS0AE3G Arabidopsis thaliana Full-length cD... 46 0.012
emb|BX817508.1|CNS0AECQ Arabidopsis thaliana Full-length cD... 46 0.012
gb|BT015585.1| Arabidopsis thaliana At1g74910 mRNA sequence 46 0.012
ref|NM_106149.2| Arabidopsis thaliana nucleotidyltransferas... 46 0.012
ref|NM_179555.1| Arabidopsis thaliana nucleotidyltransferas... 46 0.012
ref|NM_179556.1| Arabidopsis thaliana nucleotidyltransferas... 46 0.012
gb|AV565688.1|AV565688 AV565688 Arabidopsis thaliana green ... 42 0.18
>gb|AV810335.1|AV810335 AV810335 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-63-H21 3',
mRNA sequence
Length = 428
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 416 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 357
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 356 ttattagctgcataatcttagacgatgttgaaatcaaggagaatgctgttgttataaact 297
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 296 caattatcggatggaaatc 278
>gb|BP577991.1|BP577991 BP577991 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-98-O22 3',
mRNA sequence
Length = 443
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 377 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 318
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 317 ttattagctgcataatcttagacgatgttgaaatcaaggacaatgctgttgttataaact 258
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 257 caattatcggatggaaatc 239
>gb|BP578916.1|BP578916 BP578916 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-20-D09 3',
mRNA sequence
Length = 432
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Minus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 376 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 317
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 316 ttattagctgcataatcttagacgatgttgaaatcaaggagaatgctgttgttataaact 257
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 256 caattatcggatggaaatc 238
>gb|AY062521.1| Arabidopsis thaliana putative GDP-mannose pyrophosphorylase
(At2g04650; F28I8.31) mRNA, complete cds
Length = 1494
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 986 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 1045
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 1046 ttattagctgcataatcttagacgatgttgaaatcaaggagaatgctgttgttataaact 1105
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 1106 caattatcggatggaaatc 1124
Score = 61.9 bits (31), Expect = 2e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 265 gatttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctc 324
|||||||||||||||||||| || || |||| ||||||| |||||| | ||||||||
Sbjct: 811 gatttctgggaacagatcaagactccggggaaatctttgaaatgctcggctttatatctt 870
Query: 325 tctcagtttcgccatacctctcctcatcttttagcctcaggagatgg 371
|| || || ||| | || || |||||| ||||||| |||||||||||
Sbjct: 871 tcccaattccgcgaaacatcgcctcatattttagcttcaggagatgg 917
>gb|BT000123.1| Arabidopsis thaliana putative GDP-mannose pyrophosphorylase
(At2g04650) mRNA, complete cds
Length = 1327
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 911 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 970
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 971 ttattagctgcataatcttagacgatgttgaaatcaaggagaatgctgttgttataaact 1030
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 1031 caattatcggatggaaatc 1049
Score = 61.9 bits (31), Expect = 2e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 265 gatttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctc 324
|||||||||||||||||||| || || |||| ||||||| |||||| | ||||||||
Sbjct: 736 gatttctgggaacagatcaagactccggggaaatctttgaaatgctcggctttatatctt 795
Query: 325 tctcagtttcgccatacctctcctcatcttttagcctcaggagatgg 371
|| || || ||| | || || |||||| ||||||| |||||||||||
Sbjct: 796 tcccaattccgcgaaacatcgcctcatattttagcttcaggagatgg 842
>emb|BX820503.1|CNS0A9MF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH41ZB02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1422
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 1018 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 1077
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 1078 ttattagctgcataatcttagacgatgttgaaatcaaggagaatgctgttgttataaact 1137
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 1138 caattatcggatggaaatc 1156
Score = 61.9 bits (31), Expect = 2e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 265 gatttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctc 324
|||||||||||||||||||| || || |||| ||||||| |||||| | ||||||||
Sbjct: 843 gatttctgggaacagatcaagactccggggaaatctttgaaatgctcggctttatatctt 902
Query: 325 tctcagtttcgccatacctctcctcatcttttagcctcaggagatgg 371
|| || || ||| | || || |||||| ||||||| |||||||||||
Sbjct: 903 tcccaattccgcgaaacatcgcctcatattttagcttcaggagatgg 949
>ref|NM_126494.4| Arabidopsis thaliana nucleotidyltransferase AT2G04650 mRNA, complete
cds
Length = 1526
Score = 77.8 bits (39), Expect = 3e-012
Identities = 114/139 (82%)
Strand = Plus / Plus
Query: 437 caaagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggc 496
||||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||
Sbjct: 1018 caaagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggc 1077
Query: 497 ttatcaattgcataattctggatgatgttgaaattatggaaaatgctgttgttatacatt 556
|||| | |||||||| | || ||||||||||| | ||| ||||||||||||||| | |
Sbjct: 1078 ttattagctgcataatcttagacgatgttgaaatcaaggagaatgctgttgttataaact 1137
Query: 557 caattgtagggtggaaatc 575
||||| | || ||||||||
Sbjct: 1138 caattatcggatggaaatc 1156
Score = 61.9 bits (31), Expect = 2e-007
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 265 gatttctgggaacagatcaaaaccccagggatgtctttgagatgctctgggttatatctc 324
|||||||||||||||||||| || || |||| ||||||| |||||| | ||||||||
Sbjct: 843 gatttctgggaacagatcaagactccggggaaatctttgaaatgctcggctttatatctt 902
Query: 325 tctcagtttcgccatacctctcctcatcttttagcctcaggagatgg 371
|| || || ||| | || || |||||| ||||||| |||||||||||
Sbjct: 903 tcccaattccgcgaaacatcgcctcatattttagcttcaggagatgg 949
>gb|AV792679.1|AV792679 AV792679 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-16-C10 3',
mRNA sequence
Length = 442
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 520 gatgttgaaattatggaaaatgctgttgttatacattcaattgtagggtggaaatc 575
||||||||||| | ||| ||||||||||||||| | |||||| | || ||||||||
Sbjct: 427 gatgttgaaatcaaggagaatgctgttgttataaactcaattatcggatggaaatc 372
>gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence
Length = 116217
Score = 48.1 bits (24), Expect = 0.003
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||||
Sbjct: 106765 aagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggctt 106824
Query: 499 atcaattgcataattctggatgatgttgaaat 530
|| | |||||||| | || |||||||||||
Sbjct: 106825 attagctgcataatcttagacgatgttgaaat 106856
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.003
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 439 aagattggcccaaatgtctctatatcagcaaatgcacgcgttggagctggtgccaggctt 498
||||| || |||||||| || ||||||||||||| || |||||| |||||| ||||||
Sbjct: 1622451 aagatcggtccaaatgtgtcgatatcagcaaatgttcgtgttggacctggtgtaaggctt 1622392
Query: 499 atcaattgcataattctggatgatgttgaaat 530
|| | |||||||| | || |||||||||||
Sbjct: 1622391 attagctgcataatcttagacgatgttgaaat 1622360
>gb|CB260970.1|CB260970 46-E9519-012-003-L06-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769L063Q 5-PRIME, mRNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 285 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 344
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 345 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 404
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 405 tccttgacgatgttgagatcatggaaaatgc 435
>gb|AF372967.1|AF372967 Arabidopsis thaliana At1g74910/F9E10_24 mRNA, complete cds
Length = 1657
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 1066 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 1125
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 1126 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1185
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1186 tccttgacgatgttgagatcatggaaaatgc 1216
>gb|AY124853.1| Arabidopsis thaliana At1g74910/F9E10_24 mRNA, complete cds
Length = 1248
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 893 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 952
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 953 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1012
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1013 tccttgacgatgttgagatcatggaaaatgc 1043
>emb|BX815044.1|CNS0AE4A Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS27ZE10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1652
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 1061 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 1120
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 1121 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1180
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1181 tccttgacgatgttgagatcatggaaaatgc 1211
>emb|BX815312.1|CNS0AE3G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS51ZA11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1452
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 874 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 933
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 934 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 993
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 994 tccttgacgatgttgagatcatggaaaatgc 1024
>emb|BX817508.1|CNS0AECQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL27ZF08 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1510
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 1029 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 1088
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 1089 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1148
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1149 tccttgacgatgttgagatcatggaaaatgc 1179
>gb|BT015585.1| Arabidopsis thaliana At1g74910 mRNA sequence
Length = 1163
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 890 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 949
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 950 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1009
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1010 tccttgacgatgttgagatcatggaaaatgc 1040
>ref|NM_106149.2| Arabidopsis thaliana nucleotidyltransferase AT1G74910 transcript
variant AT1G74910.1 mRNA, complete cds
Length = 1879
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 1115 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 1174
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 1175 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1234
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1235 tccttgacgatgttgagatcatggaaaatgc 1265
>ref|NM_179555.1| Arabidopsis thaliana nucleotidyltransferase AT1G74910 transcript
variant AT1G74910.2 mRNA, complete cds
Length = 1830
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 1066 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 1125
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 1126 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1185
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1186 tccttgacgatgttgagatcatggaaaatgc 1216
>ref|NM_179556.1| Arabidopsis thaliana nucleotidyltransferase AT1G74910 transcript
variant AT1G74910.3 mRNA, complete cds
Length = 1877
Score = 46.1 bits (23), Expect = 0.012
Identities = 119/151 (78%)
Strand = Plus / Plus
Query: 392 ttggcgatgtctatatccatccatctgccaaggtgcatcctacttcaaagattggcccaa 451
|||| ||||| || || ||||| ||||| || || || || ||| |||||||||| || |
Sbjct: 1115 ttggtgatgtttacatacatccttctgcaaaagttcacccaactgcaaagattggtccca 1174
Query: 452 atgtctctatatcagcaaatgcacgcgttggagctggtgccaggcttatcaattgcataa 511
| ||||| || || |||||||| || |||||| | || | ||||||||| | ||||| |
Sbjct: 1175 acgtctcaatctctgcaaatgctcgtgttggaccgggcgtcaggcttatgagctgcatca 1234
Query: 512 ttctggatgatgttgaaattatggaaaatgc 542
| || || |||||||| || |||||||||||
Sbjct: 1235 tccttgacgatgttgagatcatggaaaatgc 1265
>gb|AV565688.1|AV565688 AV565688 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ228h01F 3', mRNA sequence
Length = 384
Score = 42.1 bits (21), Expect = 0.18
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 538 aatgctgttgttatacattcaattgtagggtggaaatcatccattggaaaatggtca 594
||||||||||||||| | |||||| | || |||||||| || || || |||||||||
Sbjct: 378 aatgctgttgttataaactcaattatcggatggaaatcttctataggtaaatggtca 322
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 584,837
Number of Sequences: 1013581
Number of extensions: 584837
Number of successful extensions: 46670
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46324
Number of HSP's gapped (non-prelim): 346
length of query: 1000
length of database: 908,940,872
effective HSP length: 20
effective length of query: 980
effective length of database: 888,669,252
effective search space: 870895866960
effective search space used: 870895866960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)