BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440806.2.2
         (1155 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CT026243.1|  Arabidopsis thaliana T-DNA flanking sequenc...    44   0.053
gb|AY058064.1|  Arabidopsis thaliana putative pectate lyase ...    44   0.053
gb|AY098948.1|  Arabidopsis thaliana At5g04300/At5g04300 mRN...    44   0.053
ref|NM_120513.2|  Arabidopsis thaliana pectate lyase AT5G043...    44   0.053
ref|NC_003076.4|  Arabidopsis thaliana chromosome 5, complet...    44   0.053

>emb|CT026243.1| Arabidopsis thaliana T-DNA flanking sequence GK-290H07-015348,
           genomic survey sequence
          Length = 164

 Score = 44.1 bits (22), Expect = 0.053
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 516 tccacgtggtgaacaacgactacacg 541
           ||||||||||||||||||||| ||||
Sbjct: 92  tccacgtggtgaacaacgacttcacg 117



>gb|AY058064.1| Arabidopsis thaliana putative pectate lyase mRNA, complete cds
          Length = 1697

 Score = 44.1 bits (22), Expect = 0.053
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 516  tccacgtggtgaacaacgactacacg 541
            ||||||||||||||||||||| ||||
Sbjct: 975  tccacgtggtgaacaacgacttcacg 1000



>gb|AY098948.1| Arabidopsis thaliana At5g04300/At5g04300 mRNA, complete cds
          Length = 1050

 Score = 44.1 bits (22), Expect = 0.053
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 516 tccacgtggtgaacaacgactacacg 541
           ||||||||||||||||||||| ||||
Sbjct: 482 tccacgtggtgaacaacgacttcacg 507



>ref|NM_120513.2| Arabidopsis thaliana pectate lyase AT5G04310 mRNA, complete cds
          Length = 1710

 Score = 44.1 bits (22), Expect = 0.053
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 516  tccacgtggtgaacaacgactacacg 541
            ||||||||||||||||||||| ||||
Sbjct: 989  tccacgtggtgaacaacgacttcacg 1014



>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
          Length = 26992728

 Score = 44.1 bits (22), Expect = 0.053
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 516     tccacgtggtgaacaacgactacacg 541
               ||||||||||||||||||||| ||||
Sbjct: 1206005 tccacgtggtgaacaacgacttcacg 1205980



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 360,531
Number of Sequences: 1013581
Number of extensions: 360531
Number of successful extensions: 23513
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23392
Number of HSP's gapped (non-prelim): 121
length of query: 1155
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1135
effective length of database: 888,669,252
effective search space: 1008639601020
effective search space used: 1008639601020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)