BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440773.2.1
(1437 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL511564.1|CL511564 SAIL_84_D06.v1 SAIL Collection Arabi... 56 2e-005
gb|BP562733.1|BP562733 BP562733 RAFL14 Arabidopsis thaliana... 56 2e-005
gb|BP798029.1|BP798029 BP798029 RAFL14 Arabidopsis thaliana... 56 2e-005
gb|BP823729.1|BP823729 BP823729 RAFL19 Arabidopsis thaliana... 56 2e-005
gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complet... 56 2e-005
emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cD... 56 2e-005
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 56 2e-005
emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome... 56 2e-005
ref|NM_116162.4| Arabidopsis thaliana protein binding / ubi... 56 2e-005
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 56 2e-005
gb|BP813040.1|BP813040 BP813040 RAFL19 Arabidopsis thaliana... 54 7e-005
gb|AQ962161.1|AQ962161 LERGD69TF LERG Arabidopsis thaliana ... 48 0.004
gb|AQ962162.1|AQ962162 LERGD69TR LERG Arabidopsis thaliana ... 48 0.004
gb|BP833602.1|BP833602 BP833602 RAFL19 Arabidopsis thaliana... 46 0.017
emb|BX829937.1|CNS09ZZC Arabidopsis thaliana Full-length cD... 44 0.066
dbj|AB005237.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.066
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.066
gb|BT020620.1| Arabidopsis thaliana At5g05810 gene, complet... 44 0.066
gb|BT021932.1| Arabidopsis thaliana At5g05810 gene, complet... 44 0.066
ref|NM_120663.2| Arabidopsis thaliana protein binding / ubi... 44 0.066
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.066
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.26
gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 ... 42 0.26
ref|NM_101003.1| Arabidopsis thaliana ATP binding / carbohy... 42 0.26
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.26
>gb|CL511564.1|CL511564 SAIL_84_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_84_D06.v1, DNA sequence
Length = 975
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 766 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 723
>gb|BP562733.1|BP562733 BP562733 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-39-O20 5',
mRNA sequence
Length = 662
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 309 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 352
Score = 44.1 bits (22), Expect = 0.066
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tctgttatgagtatctatttga 597
||||||||||||||||||||||
Sbjct: 523 tctgttatgagtatctatttga 544
>gb|BP798029.1|BP798029 BP798029 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-L17 5',
mRNA sequence
Length = 391
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 303 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 346
>gb|BP823729.1|BP823729 BP823729 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-F23 5',
mRNA sequence
Length = 392
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 285 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 328
>gb|BT006418.1| Arabidopsis thaliana At3g62970 gene, complete cds
Length = 831
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 268 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 311
Score = 44.1 bits (22), Expect = 0.066
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tctgttatgagtatctatttga 597
||||||||||||||||||||||
Sbjct: 482 tctgttatgagtatctatttga 503
>emb|BX825642.1|CNS0A514 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL52ZF09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 947
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 272 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 315
Score = 44.1 bits (22), Expect = 0.066
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tctgttatgagtatctatttga 597
||||||||||||||||||||||
Sbjct: 486 tctgttatgagtatctatttga 507
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 23214504 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 23214547
>emb|AL163816.1|ATT20O10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20O10
Length = 83122
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 14159 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 14202
>ref|NM_116162.4| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
zinc ion binding AT3G62970 mRNA, complete cds
Length = 1088
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 303 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 346
Score = 44.1 bits (22), Expect = 0.066
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 576 tctgttatgagtatctatttga 597
||||||||||||||||||||||
Sbjct: 517 tctgttatgagtatctatttga 538
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 23282248 tgtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 23282291
>gb|BP813040.1|BP813040 BP813040 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-05-D11 5',
mRNA sequence
Length = 408
Score = 54.0 bits (27), Expect = 7e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 363 gtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
|||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct: 288 gtggcgtcaatatgggagaatacttttgcgatatctgcaaatt 330
>gb|AQ962161.1|AQ962161 LERGD69TF LERG Arabidopsis thaliana genomic clone LERGD69, DNA
sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaatt 405
||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 556 tgtggcgtcaatatgggagaatacttgtgcgatatctgcaaatt 513
>gb|AQ962162.1|AQ962162 LERGD69TR LERG Arabidopsis thaliana genomic clone LERGD69, DNA
sequence
Length = 140
Score = 48.1 bits (24), Expect = 0.004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 370 caatatgggagagtacttttgtgatatatgcaaatt 405
|||||||||||| |||||||| ||||| ||||||||
Sbjct: 1 caatatgggagaatacttttgcgatatctgcaaatt 36
>gb|BP833602.1|BP833602 BP833602 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-96-M12 5',
mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 0.017
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 362 tgtggagtcaatatgggagagtacttttgtgatatatgcaaat 404
||||| |||||||||||||| |||||| | ||||| |||||||
Sbjct: 287 tgtggcgtcaatatgggagaatactttcgcgatatctgcaaat 329
>emb|BX829937.1|CNS09ZZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB47ZG12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1433
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 1036 cgttaattacatctctgccaccctcc 1011
>dbj|AB005237.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJJ3
Length = 87835
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 68585 cgttaattacatctctgccaccctcc 68560
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 1646900 cgttaattacatctctgccaccctcc 1646875
>gb|BT020620.1| Arabidopsis thaliana At5g05810 gene, complete cds
Length = 1420
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 1029 cgttaattacatctctgccaccctcc 1004
>gb|BT021932.1| Arabidopsis thaliana At5g05810 gene, complete cds
Length = 1062
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 925 cgttaattacatctctgccaccctcc 900
>ref|NM_120663.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc
ion binding AT5G05810 mRNA, complete cds
Length = 1426
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 1033 cgttaattacatctctgccaccctcc 1008
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.066
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 21 cgttatttacatctctgccaccctcc 46
||||| ||||||||||||||||||||
Sbjct: 1747863 cgttaattacatctctgccaccctcc 1747838
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.26
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 988 aagaaccggaggaggaaacat 1008
|||||||||||||||||||||
Sbjct: 3798090 aagaaccggaggaggaaacat 3798110
>gb|AC007259.4| Arabidopsis thaliana chromosome I BAC T28P6 genomic sequence, complete
sequence
Length = 97146
Score = 42.1 bits (21), Expect = 0.26
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 988 aagaaccggaggaggaaacat 1008
|||||||||||||||||||||
Sbjct: 19811 aagaaccggaggaggaaacat 19791
>ref|NM_101003.1| Arabidopsis thaliana ATP binding / carbohydrate binding / kinase/
protein kinase/ protein serine/threonine kinase/
protein-tyrosine kinase/ sugar bi> AT1G11300 mRNA,
complete cds
Length = 4908
Score = 42.1 bits (21), Expect = 0.26
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 988 aagaaccggaggaggaaacat 1008
|||||||||||||||||||||
Sbjct: 2946 aagaaccggaggaggaaacat 2966
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.26
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 988 aagaaccggaggaggaaacat 1008
|||||||||||||||||||||
Sbjct: 3798269 aagaaccggaggaggaaacat 3798289
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 720,481
Number of Sequences: 1013581
Number of extensions: 720481
Number of successful extensions: 51706
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50025
Number of HSP's gapped (non-prelim): 1681
length of query: 1437
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1416
effective length of database: 887,655,671
effective search space: 1256920430136
effective search space used: 1256920430136
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)