BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.2
(605 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA597443.1|AA597443 29714 Lambda-PRL2 Arabidopsis thalia... 76 8e-012
gb|AI995871.1|AI995871 701548981 A. thaliana, Columbia Col-... 76 8e-012
gb|AU227221.1|AU227221 AU227221 RAFL14 Arabidopsis thaliana... 76 8e-012
gb|AU230508.1|AU230508 AU230508 RAFL19 Arabidopsis thaliana... 76 8e-012
gb|AU239225.1|AU239225 AU239225 RAFL19 Arabidopsis thaliana... 76 8e-012
gb|AV533964.1|AV533964 AV533964 Arabidopsis thaliana flower... 76 8e-012
gb|CK118859.1|CK118859 215l17.p1 AtM1 Arabidopsis thaliana ... 76 8e-012
gb|BP607947.1|BP607947 BP607947 RAFL16 Arabidopsis thaliana... 76 8e-012
gb|AY084808.1| Arabidopsis thaliana clone 11842 mRNA, compl... 76 8e-012
emb|BX818319.1|CNS0AE6C Arabidopsis thaliana Full-length cD... 76 8e-012
dbj|AK118363.1| Arabidopsis thaliana mRNA for (AY084808) RN... 76 8e-012
ref|NM_179309.2| Arabidopsis thaliana DNA-directed RNA poly... 76 8e-012
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 72 1e-010
gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis tha... 72 1e-010
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 72 1e-010
gb|BP583950.1|BP583950 BP583950 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP596063.1|BP596063 BP596063 RAFL15 Arabidopsis thaliana... 60 5e-007
ref|NM_104852.1| Arabidopsis thaliana DNA-directed RNA poly... 60 5e-007
gb|BP812614.1|BP812614 BP812614 RAFL19 Arabidopsis thaliana... 52 1e-004
emb|AL089489.1|CNS00TBN Arabidopsis thaliana genome survey ... 50 4e-004
gb|BP578138.1|BP578138 BP578138 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP578312.1|BP578312 BP578312 RAFL14 Arabidopsis thaliana... 44 0.027
gb|CL489610.1|CL489610 SAIL_527_F07.v1 SAIL Collection Arab... 42 0.11
gb|CW846288.1|CW846288 GT13107.Ds5.10.28.2003.jx37.841 Arab... 42 0.11
gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BA... 42 0.11
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.11
>gb|AA597443.1|AA597443 29714 Lambda-PRL2 Arabidopsis thaliana cDNA clone 198M7T7, mRNA
sequence
Length = 281
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 98 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 39
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 38 cgcctgcagcagta 25
>gb|AI995871.1|AI995871 701548981 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701548981, mRNA sequence
Length = 418
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 146 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 205
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 206 cgcctgcagcagta 219
>gb|AU227221.1|AU227221 AU227221 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-88-K22 3',
mRNA sequence
Length = 423
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 181 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 240
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 241 cgcctgcagcagta 254
>gb|AU230508.1|AU230508 AU230508 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-A21 3',
mRNA sequence
Length = 416
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 191 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 250
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 251 cgcctgcagcagta 264
>gb|AU239225.1|AU239225 AU239225 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-A21 5',
mRNA sequence
Length = 466
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 283 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 224
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 223 cgcctgcagcagta 210
>gb|AV533964.1|AV533964 AV533964 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB071c07F 3', mRNA sequence
Length = 393
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 177 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 236
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 237 cgcctgcagcagta 250
>gb|CK118859.1|CK118859 215l17.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011L17215
5-PRIME, mRNA sequence
Length = 394
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 245 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 186
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 185 cgcctgcagcagta 172
>gb|BP607947.1|BP607947 BP607947 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-M24 3',
mRNA sequence
Length = 411
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 177 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 236
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 237 cgcctgcagcagta 250
>gb|AY084808.1| Arabidopsis thaliana clone 11842 mRNA, complete sequence
Length = 482
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 321 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 262
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 261 cgcctgcagcagta 248
>emb|BX818319.1|CNS0AE6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL72ZE06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 514
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 273 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 214
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 213 cgcctgcagcagta 200
>dbj|AK118363.1| Arabidopsis thaliana mRNA for (AY084808) RNA polymerase II subunit
(hsRPB10), putative [Arabidopsis thaliana], complete
cds, clone: RAFL19-63-A21
Length = 471
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 283 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 224
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 223 cgcctgcagcagta 210
>ref|NM_179309.2| Arabidopsis thaliana DNA-directed RNA polymerase AT1G11475 mRNA,
complete cds
Length = 562
Score = 75.8 bits (38), Expect = 8e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 321 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 262
Query: 353 cgcctgcagcagta 366
||||||||||||||
Sbjct: 261 cgcctgcagcagta 248
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 71.9 bits (36), Expect = 1e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 3863499 tgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcatacgcctgcagc 3863440
Query: 363 agta 366
||||
Sbjct: 3863439 agta 3863436
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I,
complete sequence
Length = 84797
Score = 71.9 bits (36), Expect = 1e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 48262 tgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcatacgcctgcagc 48203
Query: 363 agta 366
||||
Sbjct: 48202 agta 48199
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 71.9 bits (36), Expect = 1e-010
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 303 tgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcagc 362
||||||||||||| | ||||||||| || |||||||| ||||| ||||| ||||||||||
Sbjct: 3863678 tgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcatacgcctgcagc 3863619
Query: 363 agta 366
||||
Sbjct: 3863618 agta 3863615
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 335 acatgtgtcatgagcattcgcctgcagcagtagcgga 371
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 22791628 acatgagtcataagcatacgcctgcagcagtaacgga 22791592
>gb|BP583950.1|BP583950 BP583950 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-44-D05 3',
mRNA sequence
Length = 425
Score = 67.9 bits (34), Expect = 2e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| |||||
Sbjct: 181 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattagcata 240
Query: 353 cgcctgcagcagta 366
||||||||| ||||
Sbjct: 241 cgcctgcagaagta 254
>gb|BP596063.1|BP596063 BP596063 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-32-J08 3',
mRNA sequence
Length = 307
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| | |||
Sbjct: 143 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattaccata 202
Query: 353 cgcctgcagcagta 366
|||||| |||||||
Sbjct: 203 cgcctggagcagta 216
>ref|NM_104852.1| Arabidopsis thaliana DNA-directed RNA polymerase AT1G61700 mRNA,
complete cds
Length = 216
Score = 60.0 bits (30), Expect = 5e-007
Identities = 126/158 (79%)
Strand = Plus / Minus
Query: 302 gtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcattcgcctgcag 361
||||||||||| || | ||| || || || || ||||| ||||| ||||| |||||||||
Sbjct: 191 gtgttgtagtttagaagcttttcgattagatcgacatgagtcataagcatacgcctgcag 132
Query: 362 cagtagcggaacaattccaaagcatccagagcatccccttctgagtagtcggcctggagg 421
||||| |||| ||| | | || || |||||||||||||| | ||| || ||||||||
Sbjct: 131 cagtaacggactaatccaagcgcgtcaagagcatccccttcagcgtaatcagcctggaga 72
Query: 422 aggtcgaggtatagatcccacttgttcccaataacctt 459
|| || |||||| ||||| ||||||||||| |||||
Sbjct: 71 agttcaaggtatgtgtcccatttgttcccaatcacctt 34
>gb|BP812614.1|BP812614 BP812614 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-O13 5',
mRNA sequence
Length = 403
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||||||| ||||| | |||
Sbjct: 283 ttctccagagtgttgtagttgagaagcttctcaatcagatcaacatgagtcattaccata 224
Query: 353 cgcctgcagcagta 366
||||| || |||||
Sbjct: 223 cgcctccaccagta 210
>emb|AL089489.1|CNS00TBN Arabidopsis thaliana genome survey sequence T7 end of BAC T4A5 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 249
Score = 50.1 bits (25), Expect = 4e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 322 ctcaatgaggtcaacatgtgtcatgagcattcgcctgcagcagta 366
|||||| || |||||||| ||||| ||||| ||||||||||||||
Sbjct: 1 ctcaatcagatcaacatgagtcattagcatacgcctgcagcagta 45
>gb|BP578138.1|BP578138 BP578138 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-16-I15 3',
mRNA sequence
Length = 461
Score = 46.1 bits (23), Expect = 0.007
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || |||| ||| ||||| || ||
Sbjct: 182 ttctccagagtgttgtagttgagaagcttctcaatcagatcaaaatgagtcattaggata 241
Query: 353 cgcctgc 359
|||||||
Sbjct: 242 cgcctgc 248
>gb|BP578312.1|BP578312 BP578312 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-17-I07 3',
mRNA sequence
Length = 302
Score = 44.1 bits (22), Expect = 0.027
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 293 ttctctagggtgttgtagttgagcaacttctcaatgaggtcaacatgtgtcatgagcatt 352
||||| || |||||||||||||| | ||||||||| || | |||||| || | |||||
Sbjct: 181 ttctccagagtgttgtagttgagaagcttctcaatcagataaacatgagtacttagcata 240
Query: 353 cgcctgcagcagta 366
|||||| |||||||
Sbjct: 241 cgcctggagcagta 254
>gb|CL489610.1|CL489610 SAIL_527_F07.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_527_F07.v1, DNA sequence
Length = 996
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 335 acatgtgtcatgagcattcgcctgcagcagtagcgga 371
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 311 acatgagtcataagcatacgcctgcagcagtaacgga 275
>gb|CW846288.1|CW846288 GT13107.Ds5.10.28.2003.jx37.841 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT13107, DNA sequence
Length = 841
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 335 acatgtgtcatgagcattcgcctgcagcagtagcgga 371
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 483 acatgagtcataagcatacgcctgcagcagtaacgga 519
>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
sequence
Length = 87394
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 335 acatgtgtcatgagcattcgcctgcagcagtagcgga 371
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 39858 acatgagtcataagcatacgcctgcagcagtaacgga 39822
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.11
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 335 acatgtgtcatgagcattcgcctgcagcagtagcgga 371
||||| ||||| ||||| |||||||||||||| ||||
Sbjct: 7029279 acatgagtcataagcatacgcctgcagcagtaacgga 7029243
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 259,049
Number of Sequences: 1013581
Number of extensions: 259049
Number of successful extensions: 19438
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18910
Number of HSP's gapped (non-prelim): 527
length of query: 605
length of database: 908,940,872
effective HSP length: 20
effective length of query: 585
effective length of database: 888,669,252
effective search space: 519871512420
effective search space used: 519871512420
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)