BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP595889.1|BP595889 BP595889 RAFL15 Arabidopsis thaliana... 52 1e-004
gb|BP643756.1|BP643756 BP643756 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|BP646984.1|BP646984 BP646984 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|AA395613.1|AA395613 28001 Lambda-PRL2 Arabidopsis thalia... 46 0.007
gb|AV783076.1|AV783076 AV783076 RAFL5 Arabidopsis thaliana ... 44 0.026
gb|AV784514.1|AV784514 AV784514 RAFL5 Arabidopsis thaliana ... 44 0.026
gb|AV794844.1|AV794844 AV794844 RAFL8 Arabidopsis thaliana ... 44 0.026
gb|AV798147.1|AV798147 AV798147 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|AV799272.1|AV799272 AV799272 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|AV802226.1|AV802226 AV802226 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|AV804652.1|AV804652 AV804652 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|AV805245.1|AV805245 AV805245 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|AV812922.1|AV812922 AV812922 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|AV816720.1|AV816720 AV816720 RAFL9 Arabidopsis thaliana ... 44 0.026
gb|BU636687.1|BU636687 010C07 Infected Arabidopsis Leaf Ara... 44 0.026
gb|AV543737.1|AV543737 AV543737 Arabidopsis thaliana roots ... 44 0.026
gb|AV566057.1|AV566057 AV566057 Arabidopsis thaliana green ... 44 0.026
gb|CK121760.1|CK121760 201b14.p1 AtM1 Arabidopsis thaliana ... 44 0.026
gb|BP579031.1|BP579031 BP579031 RAFL14 Arabidopsis thaliana... 44 0.026
gb|BP586699.1|BP586699 BP586699 RAFL15 Arabidopsis thaliana... 44 0.026
gb|BP586974.1|BP586974 BP586974 RAFL15 Arabidopsis thaliana... 44 0.026
gb|BP588500.1|BP588500 BP588500 RAFL15 Arabidopsis thaliana... 44 0.026
gb|BP596364.1|BP596364 BP596364 RAFL15 Arabidopsis thaliana... 44 0.026
gb|BP601838.1|BP601838 BP601838 RAFL16 Arabidopsis thaliana... 44 0.026
gb|BP640122.1|BP640122 BP640122 RAFL19 Arabidopsis thaliana... 44 0.026
gb|BP641347.1|BP641347 BP641347 RAFL19 Arabidopsis thaliana... 44 0.026
gb|BP644922.1|BP644922 BP644922 RAFL19 Arabidopsis thaliana... 44 0.026
gb|BP650046.1|BP650046 BP650046 RAFL19 Arabidopsis thaliana... 44 0.026
gb|BP657486.1|BP657486 BP657486 RAFL19 Arabidopsis thaliana... 44 0.026
gb|BP659455.1|BP659455 BP659455 RAFL19 Arabidopsis thaliana... 44 0.026
gb|BP784023.1|BP784023 BP784023 RAFL7 Arabidopsis thaliana ... 44 0.026
gb|BP786546.1|BP786546 BP786546 RAFL7 Arabidopsis thaliana ... 44 0.026
gb|BP814948.1|BP814948 BP814948 RAFL19 Arabidopsis thaliana... 44 0.026
gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1 44 0.026
gb|AF462808.1|AF462808 Arabidopsis thaliana beta-D-glucan e... 44 0.026
gb|AY091027.1| Arabidopsis thaliana putative beta-D-glucan ... 44 0.026
gb|AY142679.1| Arabidopsis thaliana putative beta-D-glucan ... 44 0.026
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.026
dbj|AK221104.1| Arabidopsis thaliana mRNA for beta-D-glucan... 44 0.026
ref|NM_180717.1| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.026
ref|NM_122104.3| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.026
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.026
gb|CL504454.1|CL504454 SAIL_737_G03.v1 SAIL Collection Arab... 42 0.10
emb|AJ593562.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.41
>gb|BP595889.1|BP595889 BP595889 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-31-O15 3',
mRNA sequence
Length = 453
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 281 cggacgtggtttaagtcggtgaaccagctaccgatgaa 244
>gb|BP643756.1|BP643756 BP643756 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-C03 3',
mRNA sequence
Length = 429
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 286 cggacgtggtttaagtcggtgaaccagctaccgatgaa 249
>gb|BP646984.1|BP646984 BP646984 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-73-P05 3',
mRNA sequence
Length = 401
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 316 cggacgtggtttaagtcggtgaaccagctaccgatgaa 279
>gb|AA395613.1|AA395613 28001 Lambda-PRL2 Arabidopsis thaliana cDNA clone 93O21XP 3', mRNA
sequence
Length = 500
Score = 46.1 bits (23), Expect = 0.007
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 219 cggacgtggtttaagtcggtgaagcagctnccgatgaa 256
>gb|AV783076.1|AV783076 AV783076 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-05-B18 3',
mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 292 cggacgtggtttaagtcggtgaagcagctaccgatgaa 255
>gb|AV784514.1|AV784514 AV784514 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-20-L23 3',
mRNA sequence
Length = 681
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 345 cggacgtggtttaagtcggtgaagcagctaccgatgaa 308
>gb|AV794844.1|AV794844 AV794844 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-14-N06 3',
mRNA sequence
Length = 441
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 282 cggacgtggtttaagtcggtgaagcagctaccgatgaa 245
>gb|AV798147.1|AV798147 AV798147 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-15-C09 3',
mRNA sequence
Length = 445
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 282 cggacgtggtttaagtcggtgaagcagctaccgatgaa 245
>gb|AV799272.1|AV799272 AV799272 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-19-F19 3',
mRNA sequence
Length = 409
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 282 cggacgtggtttaagtcggtgaagcagctaccgatgaa 245
>gb|AV802226.1|AV802226 AV802226 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-31-C15 3',
mRNA sequence
Length = 412
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 341 cggacgtggtttaagtcggtgaagcagctaccgatgaa 304
>gb|AV804652.1|AV804652 AV804652 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-40-A02 3',
mRNA sequence
Length = 428
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 293 cggacgtggtttaagtcggtgaagcagctaccgatgaa 256
>gb|AV805245.1|AV805245 AV805245 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-42-E03 3',
mRNA sequence
Length = 409
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 294 cggacgtggtttaagtcggtgaagcagctaccgatgaa 257
>gb|AV812922.1|AV812922 AV812922 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-76-E24 3',
mRNA sequence
Length = 420
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 282 cggacgtggtttaagtcggtgaagcagctaccgatgaa 245
>gb|AV816720.1|AV816720 AV816720 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-91-L22 3',
mRNA sequence
Length = 401
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 281 cggacgtggtttaagtcggtgaagcagctaccgatgaa 244
>gb|BU636687.1|BU636687 010C07 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 241 cggacgtggtttaagtcggtgaagcagctaccgatgaa 278
>gb|AV543737.1|AV543737 AV543737 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ21h03F 3', mRNA sequence
Length = 606
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 289 cggacgtggtttaagtcggtgaagcagctaccgatgaa 252
>gb|AV566057.1|AV566057 AV566057 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ235h04F 3', mRNA sequence
Length = 377
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 292 cggacgtggtttaagtcggtgaagcagctcccgatgaa 255
>gb|CK121760.1|CK121760 201b14.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B14201
5-PRIME, mRNA sequence
Length = 814
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 543 cggacgtggtttaagtcggtgaagcagctaccgatgaa 580
>gb|BP579031.1|BP579031 BP579031 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-20-L13 3',
mRNA sequence
Length = 425
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 290 cggacgtggtttaagtcggtgaagcagctaccgatgaa 253
>gb|BP586699.1|BP586699 BP586699 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-07-E15 3',
mRNA sequence
Length = 457
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 291 cggacgtggtttaagtcggtgaagcagctaccgatgaa 254
>gb|BP586974.1|BP586974 BP586974 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-08-F01 3',
mRNA sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 291 cggacgtggtttaagtcggtgaagcagctaccgatgaa 254
>gb|BP588500.1|BP588500 BP588500 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-46-H19 3',
mRNA sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 290 cggacgtggtttaagtcggtgaagcagctaccgatgaa 253
>gb|BP596364.1|BP596364 BP596364 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-34-F03 3',
mRNA sequence
Length = 429
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 281 cggacgtggtttaagtcggtgaagcagctaccgatgaa 244
>gb|BP601838.1|BP601838 BP601838 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-51-N24 3',
mRNA sequence
Length = 425
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 290 cggacgtggtttaagtcggtgaagcagctaccgatgaa 253
>gb|BP640122.1|BP640122 BP640122 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-50-I06 3',
mRNA sequence
Length = 399
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 264 cggacgtggtttaagtcggtgaagcagctaccgatgaa 227
>gb|BP641347.1|BP641347 BP641347 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-54-O19 3',
mRNA sequence
Length = 442
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 264 cggacgtggtttaagtcggtgaagcagctaccgatgaa 227
>gb|BP644922.1|BP644922 BP644922 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-67-B05 3',
mRNA sequence
Length = 406
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 309 cggacgtggtttaagtcggtgaagcagctaccgatgaa 272
>gb|BP650046.1|BP650046 BP650046 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-81-K11 3',
mRNA sequence
Length = 418
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 290 cggacgtggtttaagtcggtgaagcagctaccgatgaa 253
>gb|BP657486.1|BP657486 BP657486 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-31-H10 3',
mRNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 293 cggacgtggtttaagtcggtgaagcagctaccgatgaa 256
>gb|BP659455.1|BP659455 BP659455 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-39-G19 3',
mRNA sequence
Length = 405
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 318 cggacgtggtttaagtcggtgaagcagctaccgatgaa 281
>gb|BP784023.1|BP784023 BP784023 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-89-B04 3',
mRNA sequence
Length = 403
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 283 cggacgtggtttaagtcggtgaagcagctaccgatgaa 246
>gb|BP786546.1|BP786546 BP786546 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-99-L07 3',
mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 282 cggacgtggtttaagtcggtgaagcagctaccgatgaa 245
>gb|BP814948.1|BP814948 BP814948 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-37-F20 5',
mRNA sequence
Length = 383
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 178 cggacgtggtttaagtcggtgaagcagctaccgatgaa 215
>gb|AF296834.1|F22D1 Arabidopsis thaliana BAC F22D1
Length = 96102
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 51411 cggacgtggtttaagtcggtgaagcagctaccgatgaa 51374
>gb|AF462808.1|AF462808 Arabidopsis thaliana beta-D-glucan exohydrolase-like protein mRNA,
complete cds
Length = 2194
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 1903 cggacgtggtttaagtcggtgaagcagctaccgatgaa 1940
>gb|AY091027.1| Arabidopsis thaliana putative beta-D-glucan exohydrolase (At5g20950)
mRNA, complete cds
Length = 2220
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 1923 cggacgtggtttaagtcggtgaagcagctaccgatgaa 1960
>gb|AY142679.1| Arabidopsis thaliana putative beta-D-glucan exohydrolase (At5g20950)
mRNA, complete cds
Length = 1906
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 1765 cggacgtggtttaagtcggtgaagcagctaccgatgaa 1802
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 6820251 cggacgtggtttaagtcggtgaagcagctaccgatgaa 6820214
>dbj|AK221104.1| Arabidopsis thaliana mRNA for beta-D-glucan exohydrolase-like
protein, partial cds, clone: RAFL22-88-O09
Length = 477
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 178 cggacgtggtttaagtcggtgaagcagctaccgatgaa 215
>ref|NM_180717.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G20950 transcript variant AT5G20950.1 mRNA, complete
cds
Length = 2247
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 1904 cggacgtggtttaagtcggtgaagcagctaccgatgaa 1941
>ref|NM_122104.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT5G20950 transcript variant AT5G20950.2 mRNA, complete
cds
Length = 2266
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 1923 cggacgtggtttaagtcggtgaagcagctaccgatgaa 1960
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.026
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 220 cggacgtggttcaagtcggtggaccagctgccgatgaa 257
||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 7107721 cggacgtggtttaagtcggtgaagcagctaccgatgaa 7107684
>gb|CL504454.1|CL504454 SAIL_737_G03.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_737_G03.v1, DNA sequence
Length = 918
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 351 aatggatggggtgggggtggt 371
|||||||||||||||||||||
Sbjct: 857 aatggatggggtgggggtggt 837
>emb|AJ593562.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
382G04, genomic survey sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.41
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 505 gattgggccatatcattcatatat 528
|||| |||||||||||||||||||
Sbjct: 634 gattaggccatatcattcatatat 611
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,591
Number of Sequences: 1013581
Number of extensions: 198591
Number of successful extensions: 13621
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13370
Number of HSP's gapped (non-prelim): 251
length of query: 574
length of database: 908,940,872
effective HSP length: 20
effective length of query: 554
effective length of database: 888,669,252
effective search space: 492322765608
effective search space used: 492322765608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)