BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU635939.1|BU635939 043B08 Infected Arabidopsis Leaf Ara... 62 3e-007
gb|BU635948.1|BU635948 043C06 Infected Arabidopsis Leaf Ara... 62 3e-007
gb|AY050775.1| Arabidopsis thaliana unknown protein (At4g32... 62 3e-007
gb|AY113951.1| Arabidopsis thaliana unknown protein (At4g32... 62 3e-007
emb|BX842340.1|CNS0A3IX Arabidopsis thaliana Full-length cD... 62 3e-007
emb|BX842343.1|CNS0A3NL Arabidopsis thaliana Full-length cD... 62 3e-007
dbj|AK118332.1| Arabidopsis thaliana At4g32120 mRNA for unk... 62 3e-007
dbj|AK175646.1| Arabidopsis thaliana mRNA, complete cds, cl... 62 3e-007
ref|NM_119364.3| Arabidopsis thaliana galactosyltransferase... 62 3e-007
gb|BT015825.1| Arabidopsis thaliana At2g25300 gene, complet... 58 4e-006
gb|BT020527.1| Arabidopsis thaliana At2g25300 mRNA, complet... 58 4e-006
ref|NM_128087.3| Arabidopsis thaliana transferase, transfer... 58 4e-006
gb|BH241141.1|BH241141 AUILF26TR AUIL Arabidopsis thaliana ... 56 2e-005
gb|BH241178.1|BH241178 AUILE38TR AUIL Arabidopsis thaliana ... 56 2e-005
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 56 2e-005
emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome ... 56 2e-005
emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosom... 56 2e-005
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 56 2e-005
emb|BX842349.1|CNS0A3SP Arabidopsis thaliana Full-length cD... 54 7e-005
gb|AV783774.1|AV783774 AV783774 RAFL5 Arabidopsis thaliana ... 48 0.004
gb|AF386942.1|AF386942 Arabidopsis thaliana Avr9 elicitor r... 48 0.004
gb|AY081533.1| Arabidopsis thaliana Avr9 elicitor response ... 48 0.004
emb|BX831763.1|CNS0A0XI Arabidopsis thaliana Full-length cD... 48 0.004
dbj|AB013388.1| Arabidopsis thaliana genomic DNA, chromosom... 48 0.004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 48 0.004
ref|NM_124713.2| Arabidopsis thaliana transferase, transfer... 48 0.004
ref|NM_001036990.1| Arabidopsis thaliana transferase, trans... 48 0.004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 48 0.004
emb|AL755360.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.016
gb|T21861.1|T21861 3869 Lambda-PRL2 Arabidopsis thaliana cD... 44 0.064
gb|H75984.1|H75984 17689 Lambda-PRL2 Arabidopsis thaliana c... 44 0.064
gb|AV825587.1|AV825587 AV825587 RAFL7 Arabidopsis thaliana ... 44 0.064
gb|AU239194.1|AU239194 AU239194 RAFL19 Arabidopsis thaliana... 44 0.064
gb|B25990.1|B25990 T3H2TR TAMU Arabidopsis thaliana genomic... 42 0.25
emb|CR403495.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.25
gb|AC007070.5| Arabidopsis thaliana chromosome 2 clone T22F... 42 0.25
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.25
>gb|BU635939.1|BU635939 043B08 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 322
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 67 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 126
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 127 cgctttgtgattggtcggagtgctaaccgaggtgatagc 165
>gb|BU635948.1|BU635948 043C06 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 713
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 69 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 128
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 129 cgctttgtgattggtcggagtgctaaccgaggtgatagc 167
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 441 caatggtatgagcctgagtggtggaaatttgg 472
>gb|AY050775.1| Arabidopsis thaliana unknown protein (At4g32120) mRNA, complete cds
Length = 1558
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 472 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 531
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 532 cgctttgtgattggtcggagtgctaaccgaggtgatagc 570
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 844 caatggtatgagcctgagtggtggaaatttgg 875
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 149 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 208
Query: 288 ag 289
||
Sbjct: 209 ag 210
>gb|AY113951.1| Arabidopsis thaliana unknown protein (At4g32120) mRNA, complete cds
Length = 1069
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 415 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 474
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 475 cgctttgtgattggtcggagtgctaaccgaggtgatagc 513
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 787 caatggtatgagcctgagtggtggaaatttgg 818
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 92 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 151
Query: 288 ag 289
||
Sbjct: 152 ag 153
>emb|BX842340.1|CNS0A3IX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL42ZG05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1278
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 473 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 532
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 533 cgctttgtgattggtcggagtgctaaccgaggtgatagc 571
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 845 caatggtatgagcctgagtggtggaaatttgg 876
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 150 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 209
Query: 288 ag 289
||
Sbjct: 210 ag 211
>emb|BX842343.1|CNS0A3NL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS71ZB02 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1446
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 583 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 642
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 643 cgctttgtgattggtcggagtgctaaccgaggtgatagc 681
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 955 caatggtatgagcctgagtggtggaaatttgg 986
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 260 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 319
Query: 288 ag 289
||
Sbjct: 320 ag 321
>dbj|AK118332.1| Arabidopsis thaliana At4g32120 mRNA for unknown protein, complete
cds, clone: RAFL19-61-C09
Length = 1425
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 556 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 615
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 616 cgctttgtgattggtcggagtgctaaccgaggtgatagc 654
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 928 caatggtatgagcctgagtggtggaaatttgg 959
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 233 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 292
Query: 288 ag 289
||
Sbjct: 293 ag 294
>dbj|AK175646.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-I15
Length = 1435
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 556 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 615
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 616 cgctttgtgattggtcggagtgctaaccgaggtgatagc 654
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 928 caatggtatgagcctgagtggtggaaatttgg 959
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 233 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 292
Query: 288 ag 289
||
Sbjct: 293 ag 294
>ref|NM_119364.3| Arabidopsis thaliana galactosyltransferase/ transferase,
transferring hexosyl groups AT4G32120 mRNA, complete cds
Length = 1652
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 583 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 642
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||||| || ||||||||||||
Sbjct: 643 cgctttgtgattggtcggagtgctaaccgaggtgatagc 681
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 955 caatggtatgagcctgagtggtggaaatttgg 986
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 260 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 319
Query: 288 ag 289
||
Sbjct: 320 ag 321
>gb|BT015825.1| Arabidopsis thaliana At2g25300 gene, complete cds
Length = 1341
Score = 58.0 bits (29), Expect = 4e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagctt 660
|||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 550 cgttttgtgattggtcgaagtccaaatcgaggtgatagctt 590
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 691 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 743
>gb|BT020527.1| Arabidopsis thaliana At2g25300 mRNA, complete cds
Length = 1041
Score = 58.0 bits (29), Expect = 4e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagctt 660
|||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 478 cgttttgtgattggtcgaagtccaaatcgaggtgatagctt 518
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 619 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 671
>ref|NM_128087.3| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT2G25300 mRNA,
complete cds
Length = 1407
Score = 58.0 bits (29), Expect = 4e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagctt 660
|||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 616 cgttttgtgattggtcgaagtccaaatcgaggtgatagctt 656
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 757 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 809
>gb|BH241141.1|BH241141 AUILF26TR AUIL Arabidopsis thaliana genomic clone AUILF26, DNA
sequence
Length = 543
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 126 caatggtatgagcctgagtggtggaaatttgg 157
>gb|BH241178.1|BH241178 AUILE38TR AUIL Arabidopsis thaliana genomic clone AUILE38, DNA
sequence
Length = 604
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 288 caatggtatgagcctgagtggtggaaatttgg 257
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 11430601 caatggtatgagcctgagtggtggaaatttgg 11430570
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||| ||||| |||||||||||||||||
Sbjct: 11430972 tgggacgcagagttttatgtcaaagttga 11430944
>emb|AL021636.3|ATF10N7 Arabidopsis thaliana DNA chromosome 4, BAC clone F10N7 (ESSA project)
Length = 96585
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 21426 caatggtatgagcctgagtggtggaaatttgg 21457
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||| ||||| |||||||||||||||||
Sbjct: 21055 tgggacgcagagttttatgtcaaagttga 21083
>emb|AL161580.2|ATCHRIV76 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 76
Length = 165698
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 92527 caatggtatgagcctgagtggtggaaatttgg 92496
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||| ||||| |||||||||||||||||
Sbjct: 92898 tgggacgcagagttttatgtcaaagttga 92870
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 56.0 bits (28), Expect = 2e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||||||||||
Sbjct: 15517829 caatggtatgagcctgagtggtggaaatttgg 15517798
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||| ||||| |||||||||||||||||
Sbjct: 15518200 tgggacgcagagttttatgtcaaagttga 15518172
>emb|BX842349.1|CNS0A3SP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH6ZD01 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1257
Score = 54.0 bits (27), Expect = 7e-005
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtagctatt 619
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 444 ggctcttggatgccacgagatgatgctcttaaaaaacttgaggaaagaggagttgtcata 503
Query: 620 cgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| |||||||||||| | || ||||||||||||
Sbjct: 504 cgctttgtgattggtcggagttctaaccgaggtgatagc 542
Score = 48.1 bits (24), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 932 caatggtatgaacctgagtggtggaaatttgg 963
||||||||||| ||||||||||||| ||||||
Sbjct: 816 caatggtatgagcctgagtggtggacatttgg 847
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttga 813
||||| ||||| |||||||||||||||||
Sbjct: 669 tgggacgcagagttttatgtcaaagttga 697
>gb|AV783774.1|AV783774 AV783774 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-13-A06 3',
mRNA sequence
Length = 714
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 424 aatggtatgaaccagagtggtggaaatt 397
>gb|AF386942.1|AF386942 Arabidopsis thaliana Avr9 elicitor response protein-like (K19E1.14)
mRNA, complete cds
Length = 1479
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 1057 aatggtatgaaccagagtggtggaaatt 1084
>gb|AY081533.1| Arabidopsis thaliana Avr9 elicitor response protein-like
(At5g53340) mRNA, complete cds
Length = 1068
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 767 aatggtatgaaccagagtggtggaaatt 794
>emb|BX831763.1|CNS0A0XI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH28ZE07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1415
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 1032 aatggtatgaaccagagtggtggaaatt 1059
>dbj|AB013388.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19E1
Length = 73428
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 55810 aatggtatgaaccagagtggtggaaatt 55783
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 19392898 aatggtatgaaccagagtggtggaaatt 19392871
>ref|NM_124713.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT5G53340
transcript variant AT5G53340.1 mRNA, complete cds
Length = 1534
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 1057 aatggtatgaaccagagtggtggaaatt 1084
>ref|NM_001036990.1| Arabidopsis thaliana transferase, transferring hexosyl groups
AT5G53340 transcript variant AT5G53340.2 mRNA, complete
cds
Length = 1536
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 1057 aatggtatgaaccagagtggtggaaatt 1084
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 933 aatggtatgaacctgagtggtggaaatt 960
||||||||||||| ||||||||||||||
Sbjct: 21658847 aatggtatgaaccagagtggtggaaatt 21658820
>emb|AL755360.1| Arabidopsis thaliana T-DNA flanking sequence GK-070A03-011732,
genomic survey sequence
Length = 354
Score = 46.1 bits (23), Expect = 0.016
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 785 tgggatgcagaattttatgtcaaagttgaagataacatt 823
||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 84 tgggacgcagagttttatgtcaaagttgatgacaacatt 122
>gb|T21861.1|T21861 3869 Lambda-PRL2 Arabidopsis thaliana cDNA clone 103N12T7, mRNA
sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 180 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 239
Query: 288 ag 289
||
Sbjct: 240 ag 241
>gb|H75984.1|H75984 17689 Lambda-PRL2 Arabidopsis thaliana cDNA clone 192O15T7, mRNA
sequence
Length = 513
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 157 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 216
Query: 288 ag 289
||
Sbjct: 217 ag 218
>gb|AV825587.1|AV825587 AV825587 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-11-H09 5',
mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.064
Identities = 81/100 (81%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 560 ggctcctggatgccaa-gaggtgatgctctgaagaagcttgaggaaaagggtgtagctat 618
||||| ||||||||| ||| ||||||||| || || |||||||||| || || | ||
Sbjct: 473 ggctcttggatgccactgagatgatgctcttaaaaaacttgaggaaagaggagttgncat 532
Query: 619 tcgttttgttattggtcggagtgcaaatcgaggtgatagc 658
|| ||||| ||||| |||||||| || ||||||||||||
Sbjct: 533 acgctttgtgattggncggagtgctaaccgaggtgatagc 572
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 150 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 209
Query: 288 ag 289
||
Sbjct: 210 ag 211
>gb|AU239194.1|AU239194 AU239194 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-61-C09 5',
mRNA sequence
Length = 632
Score = 44.1 bits (22), Expect = 0.064
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 tggccttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgc 287
|||||||| |||| || || || |||||||||||||| ||||| || ||||| || ||||
Sbjct: 233 tggccttcttctcttgtcttgcttggctctacgtcgctggccggttatggcaagatgcgc 292
Query: 288 ag 289
||
Sbjct: 293 ag 294
>gb|B25990.1|B25990 T3H2TR TAMU Arabidopsis thaliana genomic clone T3H2, DNA sequence
Length = 523
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 167 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 219
>emb|CR403495.1| Arabidopsis thaliana T-DNA flanking sequence GK-863G04-025978,
genomic survey sequence
Length = 196
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 111 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 59
>gb|AC007070.5| Arabidopsis thaliana chromosome 2 clone T22F11 map GPA1, complete
sequence
Length = 86017
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 43924 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 43976
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.25
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 761 ttcttcagtgctgcagttgaagcctgggatgcagaattttatgtcaaagttga 813
||||| |||||||| ||| || |||||||||||| ||||| ||||||||||
Sbjct: 10779995 ttctttagtgctgctgttcaaaactgggatgcagagttttacatcaaagttga 10779943
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 677,972
Number of Sequences: 1013581
Number of extensions: 677972
Number of successful extensions: 52117
Number of sequences better than 0.5: 37
Number of HSP's better than 0.5 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50582
Number of HSP's gapped (non-prelim): 1535
length of query: 1380
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1359
effective length of database: 887,655,671
effective search space: 1206324056889
effective search space used: 1206324056889
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)